mRNA_H-akashiwo_Contig1011.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1011.11.1
Unique NamemRNA_H-akashiwo_Contig1011.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1011.11.1 vs. uniprot
Match: A0A7S4DDR9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDR9_HETAK)

HSP 1 Score: 190 bits (482), Expect = 4.420e-54
Identity = 174/178 (97.75%), Postives = 174/178 (97.75%), Query Frame = 1 
Query:    1 MISISAADPYTQKSFEELRTEDYGKGNKGGGSTAGAFGAAASGTFSSXXXXXXXXXXXXXXXGFGAAAPAPAAPAPFSXXXXXXXXXXXXXAPGFGVFGTTTPQKPAGFSFGSTPXXXXXXXPFGATTSXXXXXXXXXXSTSATGAXXXXXXXXXXXXXXXXXXXAAPTTSGFSFGAA 534
            MISISAADPYTQKSFEELRTEDYGKGNKGGGSTAGAFGAAASGTFSSXXXXXXXXXXXXXXXGFGAAAPAPAAPAPFSXXXXXXXXXXXXXAPGFGVFGTTTPQKPAGFSFGSTPXXXXXX PFGATTSXXXXXXXXXX  SATGAXXXXXXXXXXXXXXXXXXX APTTSGFSFGAA
Sbjct:  241 MISISAADPYTQKSFEELRTEDYGKGNKGGGSTAGAFGAAASGTFSSXXXXXXXXXXXXXXXGFGAAAPAPAAPAPFSXXXXXXXXXXXXXAPGFGVFGTTTPQKPAGFSFGSTPXXXXXXSPFGATTSXXXXXXXXXXXXSATGAXXXXXXXXXXXXXXXXXXXXAPTTSGFSFGAA 418
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BLAST of mRNA_H-akashiwo_Contig1011.11.1 vs. uniprot
Match: A0A7S3Y7J1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7J1_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 6.880e-14
Identity = 90/115 (78.26%), Postives = 91/115 (79.13%), Query Frame = 1 
Query:  190 FGAAAPAPAAPAPFSXXXXXXXXXXXXXAPGFGVFGTTTPQKPAGFSFGSTPXXXXXXXPFGATTSXXXXXXXXXXSTSATGAXXXXXXXXXXXXXXXXXXXAAPTTSGFSFGAA 534
            FGAA PA +APAP               APGFGVFGTTTPQKPAGFSFGST XXXXXXX   ATTSXXXXXXXXXX  SATGAXXXXXXXXXXXXXXXXXXX APTTSGFSFGAA
Sbjct:   66 FGAATPAFSAPAP---------------APGFGVFGTTTPQKPAGFSFGSTXXXXXXXXXXXATTSXXXXXXXXXXXXSATGAXXXXXXXXXXXXXXXXXXXXAPTTSGFSFGAA 165
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BLAST of mRNA_H-akashiwo_Contig1011.11.1 vs. uniprot
Match: A0A7S2YGG7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YGG7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.970e-5
Identity = 36/76 (47.37%), Postives = 40/76 (52.63%), Query Frame = 1 
Query:    1 MISISAADPYTQKSFEELRTEDYGKGNKGGGSTAGAFGAAASGTFSSXXXXXXXXXXXXXXXGFGAAAPAPAAPAP 228
            ++SI+A   Y  KSFEELR EDY +GNKG  STA A GA A                     GFG  AP PAAPAP
Sbjct:  240 LLSITAMQQYENKSFEELRFEDYSQGNKGQASTAPAAGAPA---------------------GFGFGAPQPAAPAP 294
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1011.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4DDR9_HETAK4.420e-5497.75Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y7J1_HETAK6.880e-1478.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2YGG7_9STRA1.970e-547.37Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1011contigH-akashiwo_Contig1011:288411..289085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size675
Hectar predicted targeting categoryother localisation
Exons1
Cds size675
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.5369127-CDS-H-akashiwo_Contig1011:288410..2890851681387050.5369127-CDS-H-akashiwo_Contig1011:288410..289085Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 288411..289085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1011.11.1prot_H-akashiwo_Contig1011.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1011 288411..289085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1011.11.1

>prot_H-akashiwo_Contig1011.11.1 ID=prot_H-akashiwo_Contig1011.11.1|Name=mRNA_H-akashiwo_Contig1011.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=225bp
MISISAADPYTQKSFEELRTEDYGKGNKGGGSTAGAFGAAASGTFSSTFG
APAAATGTSPFGGFGAAAPAPAAPAPFSFGAATPAFGAPAPAPGFGVFGT
TTPQKPAGFSFGSTPAPAPGASPFGATTSPFGLTTGAFGSTSATGAFSFG
ATPAPAPGASPFGAAAAPTTSGFSFGAAAPAPATSGFSFGAAAPAPFSFG
AATPAFSAPAPAPGFGVFGTTTPQK
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mRNA from alignment at H-akashiwo_Contig1011:288411..289085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1011.11.1 ID=mRNA_H-akashiwo_Contig1011.11.1|Name=mRNA_H-akashiwo_Contig1011.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=675bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:288411..289085+ (Heterosigma akashiwo CCMP452)
ATGATCTCAATCTCTGCAGCTGATCCATACACACAGAAATCCTTTGAAGA
ACTTCGAACCGAGGACTATGGAAAGGGCAATAAAGGAGGTGGCAGCACCG
CAGGGGCCTTTGGCGCTGCAGCTTCTGGCACGTTTTCGTCAACCTTTGGG
GCACCCGCAGCGGCCACTGGAACCTCCCCTTTCGGCGGCTTTGGAGCCGC
CGCACCTGCCCCTGCCGCACCTGCTCCATTCAGTTTTGGTGCGGCAACAC
CAGCCTTCGGCGCACCCGCCCCGGCCCCGGGTTTTGGGGTTTTCGGTACA
ACCACTCCTCAGAAACCTGCAGGGTTCTCATTTGGTTCAACACCTGCACC
TGCTCCTGGCGCCTCCCCCTTTGGAGCAACTACTTCTCCCTTTGGTTTAA
CCACCGGTGCATTTGGGTCGACATCAGCAACCGGGGCCTTTTCGTTCGGT
GCTACCCCTGCACCAGCTCCTGGGGCCTCTCCTTTTGGAGCTGCTGCCGC
ACCGACCACGAGTGGCTTCTCCTTTGGGGCAGCAGCCCCAGCACCAGCCA
CAAGTGGGTTCTCGTTTGGGGCGGCTGCGCCTGCTCCATTCAGTTTTGGT
GCGGCAACACCAGCCTTCAGCGCACCCGCCCCAGCCCCGGGTTTTGGGGT
TTTCGGTACAACCACTCCTCAGAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1011:288411..289085+

>mRNA_H-akashiwo_Contig1011.11.1 ID=mRNA_H-akashiwo_Contig1011.11.1|Name=mRNA_H-akashiwo_Contig1011.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=675bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:288411..289085+ (Heterosigma akashiwo CCMP452)
ATGATCTCAATCTCTGCAGCTGATCCATACACACAGAAATCCTTTGAAGA
ACTTCGAACCGAGGACTATGGAAAGGGCAATAAAGGAGGTGGCAGCACCG
CAGGGGCCTTTGGCGCTGCAGCTTCTGGCACGTTTTCGTCAACCTTTGGG
GCACCCGCAGCGGCCACTGGAACCTCCCCTTTCGGCGGCTTTGGAGCCGC
CGCACCTGCCCCTGCCGCACCTGCTCCATTCAGTTTTGGTGCGGCAACAC
CAGCCTTCGGCGCACCCGCCCCGGCCCCGGGTTTTGGGGTTTTCGGTACA
ACCACTCCTCAGAAACCTGCAGGGTTCTCATTTGGTTCAACACCTGCACC
TGCTCCTGGCGCCTCCCCCTTTGGAGCAACTACTTCTCCCTTTGGTTTAA
CCACCGGTGCATTTGGGTCGACATCAGCAACCGGGGCCTTTTCGTTCGGT
GCTACCCCTGCACCAGCTCCTGGGGCCTCTCCTTTTGGAGCTGCTGCCGC
ACCGACCACGAGTGGCTTCTCCTTTGGGGCAGCAGCCCCAGCACCAGCCA
CAAGTGGGTTCTCGTTTGGGGCGGCTGCGCCTGCTCCATTCAGTTTTGGT
GCGGCAACACCAGCCTTCAGCGCACCCGCCCCAGCCCCGGGTTTTGGGGT
TTTCGGTACAACCACTCCTCAGAAA
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