mRNA_H-akashiwo_Contig1010.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1010.5.1
Unique NamemRNA_H-akashiwo_Contig1010.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1010.5.1 vs. uniprot
Match: A0A7S3Y8Q7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Q7_HETAK)

HSP 1 Score: 339 bits (870), Expect = 1.670e-113
Identity = 159/169 (94.08%), Postives = 164/169 (97.04%), Query Frame = 1
Query:    1 KRRAEGEAELKARYEEVLSKLRPEQRQKVQGQVDSKGMAWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGKCFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNCG*EPVVREASERARDGGSDGLRADFVVRGVWEPDRDCLFDTCIIHAGSP 507
            KRRAEGEAELKARYEEVLSKLRPEQRQKVQGQVDSKGM+WMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGK FSTDHAL+C+KGGL+GWGHNQFRDVMGEFSR AWNNC  EPVVREAS+RARDGGSDGLRADFVVRGVWEPDRDCLFDT IIHAGSP
Sbjct:  197 KRRAEGEAELKARYEEVLSKLRPEQRQKVQGQVDSKGMSWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGKRFSTDHALICMKGGLVGWGHNQFRDVMGEFSRKAWNNCTWEPVVREASQRARDGGSDGLRADFVVRGVWEPDRDCLFDTRIIHAGSP 365          
BLAST of mRNA_H-akashiwo_Contig1010.5.1 vs. uniprot
Match: A0A7S4DE70_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE70_HETAK)

HSP 1 Score: 258 bits (660), Expect = 1.030e-83
Identity = 121/134 (90.30%), Postives = 128/134 (95.52%), Query Frame = 1
Query:    1 KRRAEGEAELKARYEEVLSKLRPEQRQKVQGQVDSKGMAWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGKCFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNCG*EPVVREASERAR 402
            KRRAEGEAELKARYEEVLSKLRPEQRQKVQGQVDSKGM+WMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGK FSTDHAL+C+KGG++GWGHNQFRDVMGEFSR AWNNC  EPVVREA+ + R
Sbjct:  197 KRRAEGEAELKARYEEVLSKLRPEQRQKVQGQVDSKGMSWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGKRFSTDHALMCMKGGIVGWGHNQFRDVMGEFSRKAWNNCTWEPVVREATGQGR 330          
BLAST of mRNA_H-akashiwo_Contig1010.5.1 vs. uniprot
Match: A0A7S3Y1V1_HETAK (Hypothetical protein (Fragment) n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1V1_HETAK)

HSP 1 Score: 234 bits (598), Expect = 2.960e-77
Identity = 110/122 (90.16%), Postives = 115/122 (94.26%), Query Frame = 1
Query:   67 PEQRQKVQGQVDSKGMAWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGKCFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNCG*EPVVREASERARDGGSDGLRAD 432
            PEQRQKVQGQV SKGM+WMSVVP AKESFDL AQQWR+RV+LQYGWDLQGLP+K DGCGK FSTDHALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNC  EPVVREAS+RARDGGSDGLRAD
Sbjct:    1 PEQRQKVQGQVGSKGMSWMSVVPCAKESFDLFAQQWRNRVYLQYGWDLQGLPDKYDGCGKRFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNCAWEPVVREASQRARDGGSDGLRAD 122          
BLAST of mRNA_H-akashiwo_Contig1010.5.1 vs. uniprot
Match: A0A7S3Y218_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y218_HETAK)

HSP 1 Score: 197 bits (500), Expect = 1.700e-62
Identity = 89/103 (86.41%), Postives = 95/103 (92.23%), Query Frame = 1
Query:   97 VDSKGMAWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGKCFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNCG*EPVVREASERARD 405
            +DSKGM+WMSVVP AKESFDL AQQWR+RV+LQYGWDLQGLP+K DGCGK FSTDHALVCLKGGLIGWGHNQFRDVMGEFSR AWNNC  EPVVRE S+RARD
Sbjct:    8 MDSKGMSWMSVVPCAKESFDLFAQQWRNRVYLQYGWDLQGLPDKYDGCGKRFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRKAWNNCTWEPVVREVSQRARD 110          
BLAST of mRNA_H-akashiwo_Contig1010.5.1 vs. uniprot
Match: A0A7S3Y8R9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8R9_HETAK)

HSP 1 Score: 214 bits (544), Expect = 7.320e-62
Identity = 100/163 (61.35%), Postives = 122/163 (74.85%), Query Frame = 1
Query:   19 EAELKARYEEVLSKLRPEQRQKVQGQVDSKGMAWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGKCFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNCG*EPVVREASERARDGGSDGLRADFVVRGVWEPDRDCLFDTCIIHAGSP 507
            EAE KA  E VL +L P++R +++ Q+DSK  AW+S +P A+ SFDLSA+QWRDR+ LQ GW L+GLP KCDGCG+ F+TDHAL CL GG +  GH+Q RD M +F   A+ NC  EPVVR AS+RA DG +DGL ADF  RGVWE  RDCLFDT I+HAGSP
Sbjct:  573 EAEHKAELEAVLLELEPDRRMRIRAQIDSKATAWLSALPLAEHSFDLSAEQWRDRLALQVGWQLKGLPAKCDGCGEPFTTDHALCCLHGGNVKIGHDQLRDGMVDFCMKAYGNCIREPVVRAASQRAMDGENDGLIADFATRGVWERSRDCLFDTRIVHAGSP 735          
BLAST of mRNA_H-akashiwo_Contig1010.5.1 vs. uniprot
Match: A0A7S3Y1Y6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y6_HETAK)

HSP 1 Score: 191 bits (486), Expect = 2.230e-60
Identity = 87/103 (84.47%), Postives = 93/103 (90.29%), Query Frame = 1
Query:   97 VDSKGMAWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGKCFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNCG*EPVVREASERARD 405
            +DSKGM+WMSVVPRA+ESFDLS QQW  RV LQYGWD QGLPE+C+GCGK FSTDHALVCLKGGLIGWGHNQFRDVMGEFSR AWNNC  EPVVRE S+RARD
Sbjct:    8 MDSKGMSWMSVVPRAQESFDLSVQQWHGRVQLQYGWD-QGLPERCNGCGKRFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRKAWNNCTWEPVVREVSQRARD 109          
BLAST of mRNA_H-akashiwo_Contig1010.5.1 vs. uniprot
Match: A0A7S3Y288_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y288_HETAK)

HSP 1 Score: 163 bits (412), Expect = 1.420e-48
Identity = 78/145 (53.79%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   82 KVQGQVDSKGMAWMSVVPRAKESFDLSAQQWR-DRVHLQYGWDLQGLPEKCDGCG-KCFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNCG*EPVVREASERARDGGSD-GLRADFVVRGVWEPDRDCLFDTCIIHAGSP 507
            +++ Q+DS  MAW+  +P  + SFD SA+QW   R+ LQ GW L+GLP KCDGCG + F+TDHAL CL G  +  GH+Q RD M +  R AW NC  E VVR A + A+DG  D G+  DF  R VWE  RDCLFDT I HAGSP
Sbjct:    2 RIRAQIDSNTMAWLGALPSTEHSFDFSAEQWLYHRLVLQVGWQLKGLPAKCDGCGDQPFATDHALCCLYGDSVKCGHDQLRDTMVDVCRMAWGNCTLESVVRPAPQWAKDGEKDDGITVDFATRDVWEGSRDCLFDTRIAHAGSP 146          
BLAST of mRNA_H-akashiwo_Contig1010.5.1 vs. uniprot
Match: A0A6H5G6X0_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5G6X0_9HEMI)

HSP 1 Score: 129 bits (323), Expect = 1.030e-31
Identity = 62/158 (39.24%), Postives = 94/158 (59.49%), Query Frame = 1
Query:   49 VLSKLRPEQRQKVQGQVDS----KGMAWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGK-CFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNCG*EPVVREASERARDGGSDGLRADFVVRGVWEPDRDCLFDTCIIHAGSP 507
            +L  L  ++R+ ++  V +    +   W+SV+P  +++FDLS  ++RD + ++Y  +    P  CDGCG   FS +HAL C KGGL+   HN+ RDV+G+    AW NC  EP+++EAS+      S GLR D   RGVWEP R+ LFD  ++   +P
Sbjct:  296 ILDSLPDDRRRAIERSVSNISQNRTSGWLSVLPIQRQNFDLSPCEFRDALAVRYKRNPIDAPRSCDGCGSGVFSLEHALSCKKGGLVTRRHNEIRDVLGDLMSIAWGNCCKEPIIKEASDL-----SPGLRGDLACRGVWEPQREALFDVRVVDTDAP 448          
BLAST of mRNA_H-akashiwo_Contig1010.5.1 vs. uniprot
Match: A0A0K8S445_LYGHE (Uncharacterized protein (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8S445_LYGHE)

HSP 1 Score: 118 bits (296), Expect = 1.180e-29
Identity = 57/127 (44.88%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  118 WMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGKCFSTDHALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNCG*EPVVREASERARDGGSDGLRADFVVRGVWEPDRDCLFDTCIIHA 498
            W++VVP A +  DLSA ++RD + L+YG     LP  CDGC   F  +HAL C+KGGL+  GH+  RD     S  AW     EPV+REA       G   L AD  VRGVW  +R   FDT I++A
Sbjct:   35 WLTVVPTATDGLDLSADEFRDALALRYGRVPHNLPAHCDGCSAHFDVNHALNCMKGGLVKRGHDSLRDACANLSELAWGGVAIEPVLREAEP-----GVPALIADIRVRGVWHHERPAFFDTRIVNA 156          
BLAST of mRNA_H-akashiwo_Contig1010.5.1 vs. uniprot
Match: A0A6H5FVY7_9HEMI (Reverse transcriptase domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FVY7_9HEMI)

HSP 1 Score: 117 bits (294), Expect = 1.600e-27
Identity = 60/159 (37.74%), Postives = 91/159 (57.23%), Query Frame = 1
Query:   31 KARYEEVLSKLRPEQRQKVQGQVDSKGMAWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGKCFSTDHALVCLKGGLIGWGHNQ---FRDVMGEFSRAAWNNCG*EPVVREASERARDGGSDGLRADFVVRGVWEPDRDCLFDTCIIHA 498
            K R   ++S+L   ++ K++  + +    W+SV+P A ++ DLS  Q+RD + ++YG +   LP+ CDGCG   + +HAL CLKGGL+  GH+Q    RD     +  AW     EPV++E  E     G+  L AD  + GVW P+R   FDT +I+A
Sbjct:  662 KERCHNLISQLSTGRQNKLRRIIGNNTSQWLSVIPVAADNLDLSPSQFRDALAVRYGHEFSDLPQYCDGCGLPMTNNHALNCLKGGLVKRGHDQCGLVRDQCALMASMAWKEVATEPVLQEGLE-----GNPTLVADIKIHGVWNPERTAFFDTRVINA 815          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1010.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8Q7_HETAK1.670e-11394.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DE70_HETAK1.030e-8390.30Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1V1_HETAK2.960e-7790.16Hypothetical protein (Fragment) n=4 Tax=Heterosigm... [more]
A0A7S3Y218_HETAK1.700e-6286.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8R9_HETAK7.320e-6261.35Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1Y6_HETAK2.230e-6084.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y288_HETAK1.420e-4853.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5G6X0_9HEMI1.030e-3139.24Uncharacterized protein (Fragment) n=1 Tax=Nesidio... [more]
A0A0K8S445_LYGHE1.180e-2944.88Uncharacterized protein (Fragment) n=2 Tax=Lygus h... [more]
A0A6H5FVY7_9HEMI1.600e-2737.74Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1010contigH-akashiwo_Contig1010:60798..61304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15719251
PFAMsRVT_1
Model size507
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.77e-19
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.1812067-UTR-H-akashiwo_Contig1010:60797..609381681387050.1812067-UTR-H-akashiwo_Contig1010:60797..60938Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1010 60798..60938 -
1681387050.20375-UTR-H-akashiwo_Contig1010:61193..613041681387050.20375-UTR-H-akashiwo_Contig1010:61193..61304Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1010 61194..61304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.1941497-CDS-H-akashiwo_Contig1010:60938..611931681387050.1941497-CDS-H-akashiwo_Contig1010:60938..61193Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1010 60939..61193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1010.5.1prot_H-akashiwo_Contig1010.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1010 60939..61193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1010.5.1

>prot_H-akashiwo_Contig1010.5.1 ID=prot_H-akashiwo_Contig1010.5.1|Name=mRNA_H-akashiwo_Contig1010.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=85bp
MAWMSVVPRAKESFDLSAQQWRDRVHLQYGWDLQGLPEKCDGCGKCFSTD
HALVCLKGGLIGWGHNQFRDVMGEFSRAAWNNCG*
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mRNA from alignment at H-akashiwo_Contig1010:60798..61304-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1010.5.1 ID=mRNA_H-akashiwo_Contig1010.5.1|Name=mRNA_H-akashiwo_Contig1010.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=507bp|location=Sequence derived from alignment at H-akashiwo_Contig1010:60798..61304- (Heterosigma akashiwo CCMP452)
AAGCGCAGGGCGGAGGGGGAGGCGGAGCTCAAGGCTAGGTATGAGGAGGT GCTGAGCAAGCTGAGGCCGGAGCAGAGGCAGAAGGTGCAGGGCCAGGTGG ACTCCAAGGGCATGGCGTGGATGTCTGTGGTGCCCCGTGCGAAAGAGTCA TTTGACTTGTCCGCTCAGCAGTGGCGCGACCGGGTGCACCTCCAGTACGG GTGGGACCTTCAGGGGCTGCCTGAGAAATGCGATGGATGTGGCAAGTGCT TCTCCACTGACCATGCTCTCGTGTGCTTGAAGGGAGGTCTCATAGGATGG GGCCACAACCAGTTTCGGGATGTCATGGGGGAGTTCAGCCGGGCGGCCTG GAACAACTGCGGCTAGGAGCCGGTGGTGAGGGAGGCGTCGGAGCGGGCCA GGGATGGAGGTAGCGATGGCTTGAGGGCGGATTTTGTGGTGAGGGGTGTG TGGGAACCTGATAGGGACTGTCTTTTTGATACCTGCATTATACATGCTGG CAGCCCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1010:60798..61304-

>mRNA_H-akashiwo_Contig1010.5.1 ID=mRNA_H-akashiwo_Contig1010.5.1|Name=mRNA_H-akashiwo_Contig1010.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=255bp|location=Sequence derived from alignment at H-akashiwo_Contig1010:60798..61304- (Heterosigma akashiwo CCMP452)
ATGGCGTGGATGTCTGTGGTGCCCCGTGCGAAAGAGTCATTTGACTTGTC
CGCTCAGCAGTGGCGCGACCGGGTGCACCTCCAGTACGGGTGGGACCTTC
AGGGGCTGCCTGAGAAATGCGATGGATGTGGCAAGTGCTTCTCCACTGAC
CATGCTCTCGTGTGCTTGAAGGGAGGTCTCATAGGATGGGGCCACAACCA
GTTTCGGGATGTCATGGGGGAGTTCAGCCGGGCGGCCTGGAACAACTGCG
GCTAG
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