mRNA_H-akashiwo_Contig1010.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1010.16.1
Unique NamemRNA_H-akashiwo_Contig1010.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1010.16.1 vs. uniprot
Match: A0A7S3Y5S6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5S6_HETAK)

HSP 1 Score: 97.8 bits (242), Expect = 6.570e-23
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 3 
Query:  228 VQLTLFEQGTKEVLRSGFSDGCRILDWEQNLDKTAGGGHLSVVEWLHANRSEGCTREAM 404
            +QLT+FE GTKE LRSGFSDGCRI  WEQNLD+TA GGHL V+E+LHAN SEGCT  AM
Sbjct:    1 MQLTVFELGTKEALRSGFSDGCRISKWEQNLDQTARGGHLPVLEFLHANHSEGCTEAAM 59
[Close]
BLAST of mRNA_H-akashiwo_Contig1010.16.1 vs. uniprot
Match: A0A7S4DAC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAC4_HETAK)

HSP 1 Score: 55.1 bits (131), Expect = 1.080e-6
Identity = 25/32 (78.12%), Postives = 26/32 (81.25%), Query Frame = 3 
Query:  318 LDKTAGGGHLSVVEWLHANRSEGCTREAMVRA 413
            +D  AG GHL VVEWLHANRSEGCT EAM RA
Sbjct:    3 MDFAAGNGHLCVVEWLHANRSEGCTTEAMDRA 34
[Close]
BLAST of mRNA_H-akashiwo_Contig1010.16.1 vs. uniprot
Match: A0A7S4D904_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D904_HETAK)

HSP 1 Score: 52.4 bits (124), Expect = 3.210e-5
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 3 
Query:  279 FSDGCRILDWEQNLDKTAGGGHLSVVEWLHANRSEGCTREAM 404
            F DG    +W + +D+TAG G L+V+EWL+A  +EGCT +AM
Sbjct:   55 FLDGLEFSEWNKGIDQTAGLGQLTVLEWLNAKGTEGCTTDAM 96
[Close]
BLAST of mRNA_H-akashiwo_Contig1010.16.1 vs. uniprot
Match: F4PJ10_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PJ10_CAVFA)

HSP 1 Score: 53.1 bits (126), Expect = 4.640e-5
Identity = 36/130 (27.69%), Postives = 59/130 (45.38%), Query Frame = 3 
Query:   75 WPSIEGPRNLIVFLLGGGF--ENTPSFAGF---------------FQNTSIPPKIIPSTASAYNMFSLVQLTLFEQGTKEVLRSGFSDGCRILDWEQNLDKTAGGGHLSVVEWLHANRSEGCTREAMVRA 413
            W +  G  N+I +    G     TP   G                 ++  I P+ I + A+ + +   ++   + Q  KE+  +GF+           +D+ A GGHL +V+WLH NRSEGCT++A+  A
Sbjct:   96 WAANYGNINVIKYFYSRGVLKHTTPGLLGKAMSCRNLEIIQFLVEIRSEQITPECI-NYAAGHGLLDTIKY--YHQKDKEIHHNGFTATA--------MDRAASGGHLEMVKWLHFNRSEGCTKQALDNA 214
[Close]
BLAST of mRNA_H-akashiwo_Contig1010.16.1 vs. uniprot
Match: A0A7S3Y0J0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0J0_HETAK)

HSP 1 Score: 50.8 bits (120), Expect = 6.260e-5
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 3 
Query:  318 LDKTAGGGHLSVVEWLHANRSEGCTREA 401
            +D  AG GHL VVEWLHANRSEGCT EA
Sbjct:    3 MDFAAGNGHLCVVEWLHANRSEGCTTEA 30
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1010.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S3Y5S6_HETAK6.570e-2376.27Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DAC4_HETAK1.080e-678.13Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4D904_HETAK3.210e-550.00Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
F4PJ10_CAVFA4.640e-527.69Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A7S3Y0J0_HETAK6.260e-578.57Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1010contigH-akashiwo_Contig1010:387174..387718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo133367
PFAMsAnk_2
Model size546
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.83e-05
EggNOG OGs2CVFP@1|root,2RRY1@2759|Eukaryota,3QGVA@4776|Peronosporales
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.1051908-UTR-H-akashiwo_Contig1010:387173..3872111681387050.1051908-UTR-H-akashiwo_Contig1010:387173..387211Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1010 387174..387211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.116352-CDS-H-akashiwo_Contig1010:387211..3877181681387050.116352-CDS-H-akashiwo_Contig1010:387211..387718Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1010 387212..387718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1010.16.1prot_H-akashiwo_Contig1010.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1010 387212..387718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1010.16.1

>prot_H-akashiwo_Contig1010.16.1 ID=prot_H-akashiwo_Contig1010.16.1|Name=mRNA_H-akashiwo_Contig1010.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=169bp
MPFHDTWKIDRNWPSIEGPRNLIVFLLGGGFENTPSFAGFFQNTSIPPKI
IPSTASAYNMFSLVQLTLFEQGTKEVLRSGFSDGCRILDWEQNLDKTAGG
GHLSVVEWLHANRSEGCTREAMVRAASGGHLSVVEWLHANRSEGCNTWAM
NGAAGEGHLSVVEWLHANR
back to top

mRNA from alignment at H-akashiwo_Contig1010:387174..387718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1010.16.1 ID=mRNA_H-akashiwo_Contig1010.16.1|Name=mRNA_H-akashiwo_Contig1010.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=545bp|location=Sequence derived from alignment at H-akashiwo_Contig1010:387174..387718+ (Heterosigma akashiwo CCMP452)
GGAGTGAGGTTTTCAGTTTTCAGTTCAGCTGAATGTGAATGCCCTTTCAT
GATACCTGGAAAATTGACAGAAATTGGCCATCAATTGAAGGTCCACGCAA
CCTAATAGTCTTTCTTCTTGGCGGGGGTTTTGAAAATACACCCTCATTCG
CCGGTTTCTTTCAAAACACGTCCATTCCCCCCAAAATCATTCCGTCCACG
GCATCCGCCTATAATATGTTTTCCCTGGTGCAGCTGACACTCTTCGAGCA
GGGAACAAAAGAAGTGCTTCGGAGTGGCTTTTCTGATGGCTGTAGAATAT
TGGACTGGGAGCAAAACCTTGACAAAACTGCTGGAGGAGGTCACCTGTCT
GTGGTTGAGTGGCTACATGCTAACCGCTCTGAAGGCTGCACCAGAGAGGC
CATGGTCCGTGCAGCATCGGGAGGTCACCTGTCAGTGGTGGAGTGGCTGC
ATGCCAACCGCTCTGAAGGCTGCAATACCTGGGCCATGAACGGGGCAGCA
GGGGAAGGCCACCTGTCTGTGGTTGAGTGGCTGCATGCCAACCGC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1010:387174..387718+

>mRNA_H-akashiwo_Contig1010.16.1 ID=mRNA_H-akashiwo_Contig1010.16.1|Name=mRNA_H-akashiwo_Contig1010.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=507bp|location=Sequence derived from alignment at H-akashiwo_Contig1010:387174..387718+ (Heterosigma akashiwo CCMP452)
ATGCCCTTTCATGATACCTGGAAAATTGACAGAAATTGGCCATCAATTGA
AGGTCCACGCAACCTAATAGTCTTTCTTCTTGGCGGGGGTTTTGAAAATA
CACCCTCATTCGCCGGTTTCTTTCAAAACACGTCCATTCCCCCCAAAATC
ATTCCGTCCACGGCATCCGCCTATAATATGTTTTCCCTGGTGCAGCTGAC
ACTCTTCGAGCAGGGAACAAAAGAAGTGCTTCGGAGTGGCTTTTCTGATG
GCTGTAGAATATTGGACTGGGAGCAAAACCTTGACAAAACTGCTGGAGGA
GGTCACCTGTCTGTGGTTGAGTGGCTACATGCTAACCGCTCTGAAGGCTG
CACCAGAGAGGCCATGGTCCGTGCAGCATCGGGAGGTCACCTGTCAGTGG
TGGAGTGGCTGCATGCCAACCGCTCTGAAGGCTGCAATACCTGGGCCATG
AACGGGGCAGCAGGGGAAGGCCACCTGTCTGTGGTTGAGTGGCTGCATGC
CAACCGC
back to top