mRNA_H-akashiwo_Contig1010.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1010.12.1
Unique NamemRNA_H-akashiwo_Contig1010.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1010.12.1 vs. uniprot
Match: A0A8K0EER3_BRALA (Hypp8482 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EER3_BRALA)

HSP 1 Score: 118 bits (296), Expect = 1.340e-28
Identity = 69/192 (35.94%), Postives = 105/192 (54.69%), Query Frame = 1
Query:    1 VRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANQYCSTASLKMAELTHLRKTFADNGYPEEFVEVALRKGPMTAEEEAASGDRTLGDGEEVEEWGTLVVPSIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSV 576
            +RN D S TT VYRK TH+D+YL W+SNHPV  KL  +RTL++RA+      +L+  E   +R+     GYPE     AL++G   A ++  +          V+ +   V+P IK +   L+    + N+ L  K    L N L   +      ++  V+YKISC+QC  +YVG+T+R+L  R +EH +S+
Sbjct:   84 MRNPDNSITTDVYRKETHTDQYLQWSSNHPVHQKLGIVRTLMHRADTLIEDPTLRAVEKERVREALRHCGYPE----WALKEGDNNARKKVTTDHNPQNKERRVKSFA--VLPYIKGVTERLKRAYAKHNVSLFSKPGYTLRNALVRPKDPLVPSERCGVIYKISCEQCGEAYVGETERSLGERTEEHQKSI 269          
BLAST of mRNA_H-akashiwo_Contig1010.12.1 vs. uniprot
Match: UPI00160398E9 (uncharacterized protein LOC118418223 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160398E9)

HSP 1 Score: 114 bits (286), Expect = 1.980e-27
Identity = 68/192 (35.42%), Postives = 104/192 (54.17%), Query Frame = 1
Query:    1 VRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANQYCSTASLKMAELTHLRKTFADNGYPEEFVEVALRKGPMTAEEEAASGDRTLGDGEEVEEWGTLVVPSIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSV 576
            +R  D S  T V+RK TH+D YL W+SNHPV+ KL  +RTL++RAN      SL+ AE   +R      GYPE     AL++G  T++++A     T    +    +   V+P +K +   L+    + N+ L  K    L N L   +      ++  V+YKI+C+QC   YVG+T+R+L  R+ EH +S+
Sbjct:   77 IRKPDNSIITDVFRKETHTDHYLQWSSNHPVQQKLGIVRTLMHRANTLIEDHSLREAEKEKVRVALRHCGYPE----WALKEGDNTSKKQARKDSHTRDKEQRPASYA--VLPYMKGVTERLKRAFAKHNVSLFSKPGYTLRNALVRPKDPLLPSEKCGVIYKIACEQCGDVYVGETERSLGERIAEHQKSI 262          
BLAST of mRNA_H-akashiwo_Contig1010.12.1 vs. uniprot
Match: A0A8K0A0I4_BRALA (Hypp3654 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A0I4_BRALA)

HSP 1 Score: 116 bits (291), Expect = 7.470e-27
Identity = 70/192 (36.46%), Postives = 103/192 (53.65%), Query Frame = 1
Query:    1 VRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANQYCSTASLKMAELTHLRKTFADNGYPEEFVEVALRKGPMTAEEEAASGDRTLGDGEEVEEWGTLVVPSIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSV 576
            +RN D S TT VYRK TH+D+YL W+SNHPV  KL  +RTL++RA+      +L+  E   +R+     GYPE     AL++G  ++ + A          +E       V+P IK +   L+    + N+ L  K    L N L   +      ++  V+YKISC+QC   YVG+T+R+L  R +EH +SV
Sbjct:  374 IRNPDNSITTDVYRKETHTDQYLQWSSNHPVHQKLGIVRTLMHRADTLIEDPTLRAVEKEKVREALRHCGYPE----WALKEGDNSSRKNATKDHNP--QNKERRATSFAVLPYIKGVSERLKRAYAKHNVSLFSKPGYTLRNALVRPKDPLVPSERCGVIYKISCEQCGEVYVGETERSLGERTEEHQKSV 559          
BLAST of mRNA_H-akashiwo_Contig1010.12.1 vs. uniprot
Match: UPI0016035DDD (uncharacterized protein LOC118420184 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016035DDD)

HSP 1 Score: 115 bits (288), Expect = 2.070e-26
Identity = 71/192 (36.98%), Postives = 105/192 (54.69%), Query Frame = 1
Query:    1 VRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANQYCSTASLKMAELTHLRKTFADNGYPEEFVEVALRKGPMTAEEEAASGDRTLGDGEEVEEWGTLVVPSIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSV 576
            +RN D S TT V+RK TH+D YL W+SNHPV+ KL  +RTL++RAN      +L+ AE   +R      GYPE     AL++G     ++  S D    D E+      +V+P +K +   L+    + N+ L  K    L N L   +   G  ++  V+YKI+C+QC   YVG+T+R+L  R  EH +S+
Sbjct:  445 IRNTDKSITTDVFRKETHTDHYLQWSSNHPVQQKLGVVRTLMHRANTLIEDRTLREAEKEKVRVALRHCGYPE----WALKEGD-NINKKRVSKDGHSRDKEQ-SPASYVVLPYLKGVTERLKRAYAKHNVSLFSKPGYTLRNALVRPKDPLGPSEKCGVIYKIACEQCGEVYVGETERSLGERTAEHQKSI 630          
BLAST of mRNA_H-akashiwo_Contig1010.12.1 vs. uniprot
Match: UPI00106A3D19 (uncharacterized protein LOC114543768 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A3D19)

HSP 1 Score: 113 bits (283), Expect = 7.790e-26
Identity = 68/191 (35.60%), Postives = 102/191 (53.40%), Query Frame = 1
Query:   10 EDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANQYCSTASLKMAELTHLRKTFADNGYPEEFVEVA--LRKGPMTAEEEAASGDRTLGDGEEVEEWGTLVVPSIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSV 576
            +DG     VYRK TH+D+YL + S+HP   K S + TL+ RA+   ST + K  E  H+ K    NGY  +F++    +RK          S DRT  + +     G +V+P I+ +   +  +  R NLK+ YK    L N     +     MQ + V+Y+I+C+ CE  Y+GQT+R L TR+KEH R++
Sbjct:  340 KDGHIQIKVYRKTTHTDKYLDFNSHHPATHKRSVVNTLLDRADNIPSTRNGKRKERKHVMKVLQSNGYSTKFIKNCDTMRK---------CSKDRTNNENDSA---GLVVLPYIQGVSERIARVLRRENLKVGYKPIRTLNNCFPKPKDKPNIMQSREVIYQINCQNCEFVYIGQTERALRTRLKEHQRAI 518          
BLAST of mRNA_H-akashiwo_Contig1010.12.1 vs. uniprot
Match: UPI001E1D74E4 (uncharacterized protein LOC123533404 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D74E4)

HSP 1 Score: 108 bits (271), Expect = 3.840e-24
Identity = 58/185 (31.35%), Postives = 100/185 (54.05%), Query Frame = 1
Query:   10 EDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANQYCSTASLKMAELTHLRKTFADNGYPEEFVEVALRKGPMTAEEEAASGDRTLGDGEEVEEWGTLVVPSIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEH 564
            +DGS   TVYRKPTH+D+YL++ SNH ++ K S +RTL+ RAN   +  S K  E+ H++     NGYPE   ++  +K      + +A+ DR +  G          +P I+     L  +     + + +K   ++ + + P +  T  +++  ++Y + C+ C+  Y+G+T RTL TR+ EH
Sbjct:  412 DDGSTRVTVYRKPTHTDQYLNFNSNHHLEHKRSVVRTLLRRANTLVTNESDKKKEIEHVKTALRANGYPEWIFQLPNKKSQQDKTQNSATKDRRVNVG----------MPYIRGTSEVLARVFKNHGVNMFHKPYNSIRSQVTPVKDQTDKLKKCGIIYHVKCENCKEDYIGETARTLETRLTEH 586          
BLAST of mRNA_H-akashiwo_Contig1010.12.1 vs. uniprot
Match: UPI0005F3D84A (uncharacterized protein LOC105560681 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F3D84A)

HSP 1 Score: 102 bits (253), Expect = 2.270e-23
Identity = 67/192 (34.90%), Postives = 103/192 (53.65%), Query Frame = 1
Query:    4 RNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANQYCSTASLKMAELTHLRKTFADNGYPEEFVEVALRKGPMTAEEEAASGDRTLGDGEEVEEWGTLVVPSIKELQPALRALCTRLNLKLLYKRTVNLGNLLA---PRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSR 570
            RNEDG+ +  VYRKPTH+DRYLH  S+H    K S I +LV+RA      A+L   EL HL +T   NGY    +   ++K      +E+   + T  + E+ E+   +V+P ++     +  + ++ N+K ++K   NL  +L     RRP          VYK+ C  C  +Y+G+T R ++TR+KEH R
Sbjct:   18 RNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSVISSLVHRALSISEPAALN-GELNHLHRTLTRNGYSSRNINRTIKK---LTNKESGQNNNTTPETEK-EKIKAVVLPYVRGTTDRISRILSKHNIKAIFKPCNNLSQMLPNPKDRRPPLTAPG----VYKVPCS-CGKAYIGETGRKISTRIKEHQR 199          
BLAST of mRNA_H-akashiwo_Contig1010.12.1 vs. uniprot
Match: A0A7R9XHC2_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9XHC2_9CRUS)

HSP 1 Score: 105 bits (263), Expect = 3.210e-23
Identity = 63/192 (32.81%), Postives = 100/192 (52.08%), Query Frame = 1
Query:    1 VRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANQYCSTASLKMAELTHLRKTFADNGYPEEFVEVALRKGPMTAEEEAASGDRTLGDGEEVEEW-GTLVVPSIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRS 573
             ++E G  TT+VYRK THS RYL + S HP+  K+S ++TL+ R+  +CS    +  E   +R    +NGYP   ++            EA S  ++  D E    W  T V+P  K     +     + N++ ++K    + ++L  ++      +Q NVVY+I C  CE +Y+G+TKRTL  R+ EH R+
Sbjct:  271 TKSEMGHLTTSVYRKDTHSARYLSFNSCHPMSHKISVVKTLMKRSFTHCSDVEAQERERRRVRIELMNNGYPRHVIK-----------REANSQRKSKTDNE----WKSTAVIPYCKRKSEIISQFLRKYNIRTVHKPCHQVKSILGSQKDPVDQGKQSNVVYRIPCMDCESAYIGETKRTLNERLSEHVRA 447          
BLAST of mRNA_H-akashiwo_Contig1010.12.1 vs. uniprot
Match: A0A6P4XHE6_BRABE (uncharacterized protein LOC109463556 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XHE6_BRABE)

HSP 1 Score: 102 bits (255), Expect = 7.390e-23
Identity = 66/192 (34.38%), Postives = 103/192 (53.65%), Query Frame = 1
Query:    1 VRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANQYCSTASLKMAELTHLRKTFADNGYPEEFVEVALRKGPMTAEEEAASGDRTLGDGEEVEEWGTLVVPSIKELQPALRALCTRLNLKLLYKRTVNLGN-LLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRS 573
            VRN D + TT V+RK TH+D YL W+SNHPV+ KL  +RTL++RAN      +L+ AE   +R      GYPE     ALR+G   + ++ +S +++    +E      +V+P I  +   L+ +  + N+ L  K    L N L+ P+ P   G ++  V+YKI C++C   Y G+         KE S++
Sbjct:   66 VRNPDNTITTDVFRKETHTDHYLQWSSNHPVQQKLGIVRTLMHRANTLIEDPALREAEKEKVRVALRHCGYPE----WALREGENNSRKDKSSKEQSKTGEQEQLPASYVVLPYIHGVTERLKRVYAKHNVSLYSKPGFTLRNALVRPKDPLAPG-EKCGVIYKIKCEECGEVYEGENNSRKDKSSKEQSKT 252          
BLAST of mRNA_H-akashiwo_Contig1010.12.1 vs. uniprot
Match: UPI001E274E29 (uncharacterized protein LOC123683035 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E274E29)

HSP 1 Score: 104 bits (259), Expect = 7.640e-23
Identity = 64/190 (33.68%), Postives = 95/190 (50.00%), Query Frame = 1
Query:    1 VRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANQYCSTASLKMAELTHLRKTFADNGYPEEFVEVALRKGPMTAEEEAASGDRTLGDGEEVEEWGTLVVPSIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSR 570
            V  ++G   TT+YRKPT++ +YLH+ SNH +  KL   R L  RA Q CS+ + K  E   +      NGYP+  +E+A      T        + T        E  T V+P +K L   LR +  R  ++  ++    +   L   +P     + KN +Y+I C +C  SY+G+TKR L TRVKEH +
Sbjct:  175 VHKQEGIPRTTIYRKPTNTGQYLHFESNHNLNTKLGVARCLYDRATQVCSSLNDKNEEFDKITDILEKNGYPKRILEIARTPRDNTEPRPETQTEST--------ETITTVIPYVKGLSEKLRRIGNRYGVRTAFQTKNTVRANLTKVKPDNENQRTKNCIYEIPC-ECGRSYIGETKRPLDTRVKEHQK 355          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1010.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K0EER3_BRALA1.340e-2835.94Hypp8482 protein n=1 Tax=Branchiostoma lanceolatum... [more]
UPI00160398E91.980e-2735.42uncharacterized protein LOC118418223 n=1 Tax=Branc... [more]
A0A8K0A0I4_BRALA7.470e-2736.46Hypp3654 protein n=2 Tax=Branchiostoma lanceolatum... [more]
UPI0016035DDD2.070e-2636.98uncharacterized protein LOC118420184 n=1 Tax=Branc... [more]
UPI00106A3D197.790e-2635.60uncharacterized protein LOC114543768 n=1 Tax=Dendr... [more]
UPI001E1D74E43.840e-2431.35uncharacterized protein LOC123533404 n=1 Tax=Merce... [more]
UPI0005F3D84A2.270e-2334.90uncharacterized protein LOC105560681 n=1 Tax=Volle... [more]
A0A7R9XHC2_9CRUS3.210e-2332.81Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
A0A6P4XHE6_BRABE7.390e-2334.38uncharacterized protein LOC109463556 n=1 Tax=Branc... [more]
UPI001E274E297.640e-2333.68uncharacterized protein LOC123683035 n=1 Tax=Harmo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1010contigH-akashiwo_Contig1010:383205..383780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog31033.ENSTRUP00000004727
PFAMsRVT_1
Model size576
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.76e-19
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria
Cds size576
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.3636773-CDS-H-akashiwo_Contig1010:383204..3837801681387050.3636773-CDS-H-akashiwo_Contig1010:383204..383780Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1010 383205..383780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1010.12.1prot_H-akashiwo_Contig1010.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1010 383205..383780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1010.12.1

>prot_H-akashiwo_Contig1010.12.1 ID=prot_H-akashiwo_Contig1010.12.1|Name=mRNA_H-akashiwo_Contig1010.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=192bp
VRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANQYCS
TASLKMAELTHLRKTFADNGYPEEFVEVALRKGPMTAEEEAASGDRTLGD
GEEVEEWGTLVVPSIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRP
STGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSV
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mRNA from alignment at H-akashiwo_Contig1010:383205..383780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1010.12.1 ID=mRNA_H-akashiwo_Contig1010.12.1|Name=mRNA_H-akashiwo_Contig1010.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=576bp|location=Sequence derived from alignment at H-akashiwo_Contig1010:383205..383780+ (Heterosigma akashiwo CCMP452)
GTGAGAAATGAGGATGGCTCTTTTACTACCACGGTCTACCGGAAACCCAC GCACTCTGACAGGTATCTCCATTGGACTTCCAACCATCCTGTGAAGGACA AACTTTCTGGTATTAGAACTTTGGTCTATCGTGCTAACCAATACTGCTCT ACGGCGAGCCTGAAGATGGCGGAGTTGACCCATTTGAGGAAGACTTTTGC TGACAACGGGTATCCGGAGGAGTTCGTGGAGGTAGCTTTGCGGAAGGGTC CCATGACGGCTGAGGAGGAGGCTGCCTCTGGGGATCGTACTCTGGGTGAC GGGGAGGAGGTGGAGGAATGGGGCACTTTGGTGGTTCCTTCCATCAAGGA GTTGCAGCCGGCTCTCAGGGCGCTTTGTACTAGGCTGAATTTGAAGCTTC TTTACAAGAGAACGGTCAACTTGGGCAATTTACTGGCTCCTAGAAGACCG TCCACTGGTGGAATGCAGCAGAAGAATGTGGTCTACAAGATCTCTTGTAA GCAGTGTGAGGTTAGTTATGTTGGTCAGACCAAAAGAACACTAGCCACAA GGGTGAAGGAGCATAGCCGGTCAGTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1010:383205..383780+

>mRNA_H-akashiwo_Contig1010.12.1 ID=mRNA_H-akashiwo_Contig1010.12.1|Name=mRNA_H-akashiwo_Contig1010.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=576bp|location=Sequence derived from alignment at H-akashiwo_Contig1010:383205..383780+ (Heterosigma akashiwo CCMP452)
GTGAGAAATGAGGATGGCTCTTTTACTACCACGGTCTACCGGAAACCCAC
GCACTCTGACAGGTATCTCCATTGGACTTCCAACCATCCTGTGAAGGACA
AACTTTCTGGTATTAGAACTTTGGTCTATCGTGCTAACCAATACTGCTCT
ACGGCGAGCCTGAAGATGGCGGAGTTGACCCATTTGAGGAAGACTTTTGC
TGACAACGGGTATCCGGAGGAGTTCGTGGAGGTAGCTTTGCGGAAGGGTC
CCATGACGGCTGAGGAGGAGGCTGCCTCTGGGGATCGTACTCTGGGTGAC
GGGGAGGAGGTGGAGGAATGGGGCACTTTGGTGGTTCCTTCCATCAAGGA
GTTGCAGCCGGCTCTCAGGGCGCTTTGTACTAGGCTGAATTTGAAGCTTC
TTTACAAGAGAACGGTCAACTTGGGCAATTTACTGGCTCCTAGAAGACCG
TCCACTGGTGGAATGCAGCAGAAGAATGTGGTCTACAAGATCTCTTGTAA
GCAGTGTGAGGTTAGTTATGTTGGTCAGACCAAAAGAACACTAGCCACAA
GGGTGAAGGAGCATAGCCGGTCAGTA
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