mRNA_H-akashiwo_Contig101.27.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig101.27.1
Unique NamemRNA_H-akashiwo_Contig101.27.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig101.27.1 vs. uniprot
Match: A0A7S3XSJ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSJ6_HETAK)

HSP 1 Score: 483 bits (1243), Expect = 2.150e-167
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = -1 
Query:  229 MTKKITDTNTTTAMIMTKEAEVPTCDLYCKAAKFILKKTGVACPGKELEKIVTLLDLKEKRIKRWAKKINENETAASYDMEGSDDSQEDNGSDEDEVIVEAVQTEKVNDDCSNDEEIHGHAGPIYEAFVQNGVLLAPDTLHSVLRILKVRPKRICGRGLVRPLGVARRDYRYWNQILPRQIVSLGKRKENNRRGNSKGLKKMMVTPPILFAVVNGRAKAPFQGKHGPGMRGPNKHRGLGKHSPXXXXXXXXXXXXXXXXXXXXXXXGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGGRVELSHLVVPESA 1296
            MTKKITDTNTTTAMIMTKEAEVPTCDLYCKAAKFILKKTGVACPGKELEKIVTLLDLKEKRIKRWAKKINENETAASYDMEGSDDSQEDNGSDEDEVIVEAVQTEKVNDDCSNDEEIHGHAGPIYEAFVQNGVLLAPDTLHSVLRILKVRPKRICGRGLVRPLGVARRDYRYWNQILPRQIVSLGKRKENNRRGNSKGLKKMMVTPPILFAVVNGRAKAPFQGKHGPGMRGPNKHRGLGKHSPXXXXXXXXXXXXXXXXXXXXXXXGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGGRVELSHLVVPESA
Sbjct:    1 MTKKITDTNTTTAMIMTKEAEVPTCDLYCKAAKFILKKTGVACPGKELEKIVTLLDLKEKRIKRWAKKINENETAASYDMEGSDDSQEDNGSDEDEVIVEAVQTEKVNDDCSNDEEIHGHAGPIYEAFVQNGVLLAPDTLHSVLRILKVRPKRICGRGLVRPLGVARRDYRYWNQILPRQIVSLGKRKENNRRGNSKGLKKMMVTPPILFAVVNGRAKAPFQGKHGPGMRGPNKHRGLGKHSPXXXXXXXXXXXXXXXXXXXXXXXGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGGRVELSHLVVPESA 356
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BLAST of mRNA_H-akashiwo_Contig101.27.1 vs. uniprot
Match: A0A6S9EPG3_HETAK (Hypothetical protein n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EPG3_HETAK)

HSP 1 Score: 340 bits (873), Expect = 4.730e-111
Identity = 187/246 (76.02%), Postives = 208/246 (84.55%), Query Frame = -1 
Query:  568 KITDTN-TTTAMIMTKEAEVPTCDLYCKAAKFILKKTGVACPGKELEKIVTLLDLKEKRIKRWAKKINENETAASYDM-EGSDDSQEDNGSDEDEVIVEAVQTEKVNDDCSNDEEIH-GHAGPIYEAFVQNGVLLAPDTLHSVLRILKVRPKRICGRG-LVRPLGVARRDYRYWNQILPRQIVSLGKRKENNRRGNSKGLKKMMVTPPILFAVVNGRAKAPFQGKHGP-GMRGPN-KHRGLGKHSP 1287
            KITDTN TTT  ++ KEAE P  D+YCKA++FIL++TGV CPGKELEKIVTLLDLKEKRIKRWAKKI+EN+TAA+ D  EGSDDS ++  SDED V+VEAVQTEKVNDDC  ++ +H  H GPIYEAFVQNGVLLAPDTLHSVLRILKVRPKRICGRG LVRPLGVARRDYRYWNQILPRQIV L KRKEN  RG+SKGLKKM+VTP ++F VVNGRA  PFQGKHG   M GP+ K  GLGKH P
Sbjct:    3 KITDTNNTTTVTVIKKEAEAPISDIYCKASEFILQRTGVVCPGKELEKIVTLLDLKEKRIKRWAKKISENKTAAADDTDEGSDDSGQEQDSDEDGVVVEAVQTEKVNDDCCGEKVVHDAHTGPIYEAFVQNGVLLAPDTLHSVLRILKVRPKRICGRGGLVRPLGVARRDYRYWNQILPRQIVRLSKRKENGPRGSSKGLKKMVVTP-MMFVVVNGRANVPFQGKHGARAMHGPDGKQFGLGKHGP 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig101.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XSJ6_HETAK2.150e-167100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S9EPG3_HETAK4.730e-11176.02Hypothetical protein n=5 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig101contigH-akashiwo_Contig101:1184669..1185979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1311
Hectar predicted targeting categoryother localisation
Exons1
Cds size846
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387049.2844296-UTR-H-akashiwo_Contig101:1184668..11847011681387049.2844296-UTR-H-akashiwo_Contig101:1184668..1184701Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig101 1184669..1184701 +
1681387049.3036418-UTR-H-akashiwo_Contig101:1185547..11859791681387049.3036418-UTR-H-akashiwo_Contig101:1185547..1185979Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig101 1185548..1185979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387049.2949698-CDS-H-akashiwo_Contig101:1184701..11855471681387049.2949698-CDS-H-akashiwo_Contig101:1184701..1185547Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 1184702..1185547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig101.27.1prot_H-akashiwo_Contig101.27.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig101 1184702..1185547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig101.27.1

>prot_H-akashiwo_Contig101.27.1 ID=prot_H-akashiwo_Contig101.27.1|Name=mRNA_H-akashiwo_Contig101.27.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=282bp
MWCICIPEGVICAVIGQKRLVAVLHYRVLYALTSRRHLVTHETKVFSDLR
DSKTSWNFFRGCQYSCTFWYYKVAQFNSATMAMGHKTSAAICTSSESHKR
HIGHTPVGSWTIETALVAGAILARAVLTRRVHTTAVLTKVKVLSRTMHIR
AVFLPGAVLARAALAVLSRAVLTRTVRTRAVLPKATVLVRTTHARAMLAL
EWCLGTTIHDSKQYWRSHHHFLQTLGIASAVVFFTLTKAYNLSWEDLVPV
PVVSARNTKRPNKASATDTLWSYFQNAQHRV*
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mRNA from alignment at H-akashiwo_Contig101:1184669..1185979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig101.27.1 ID=mRNA_H-akashiwo_Contig101.27.1|Name=mRNA_H-akashiwo_Contig101.27.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1311bp|location=Sequence derived from alignment at H-akashiwo_Contig101:1184669..1185979+ (Heterosigma akashiwo CCMP452)
AGAACAAATAATAAATCATAAATAACAACATAAATGTGGTGTATATGTAT
TCCAGAAGGAGTCATCTGCGCAGTGATAGGGCAAAAGAGGTTGGTTGCCG
TGCTGCATTATAGGGTATTGTATGCTTTGACCTCAAGAAGACACCTTGTG
ACACATGAAACCAAGGTTTTTTCCGACTTGAGGGACTCAAAAACTTCATG
GAATTTCTTCAGAGGCTGCCAATACTCATGCACTTTCTGGTACTACAAGG
TGGCTCAGTTCAACTCTGCCACCATGGCTATGGGGCACAAAACAAGTGCG
GCCATATGCACCTCCTCCGAAAGCCACAAGAGGCACATAGGCCACACACC
GGTGGGCTCTTGGACCATAGAGACAGCTCTTGTTGCTGGGGCCATACTTG
CCAGGGCCGTGCTTACCAGGAGAGTGCATACCACGGCCGTGCTTACCAAG
GTCAAAGTGCTTTCCAGGACCATGCATATCAGAGCCGTGTTTCTTCCCGG
GGCCGTGCTTGCCAGGGCCGCCCTTGCCGTGCTCTCCAGGGCCGTGCTTA
CCAGGACCGTGCGTACCAGGGCTGTGCTTCCCAAGGCCACGGTGCTTGTT
AGGACCACGCATGCCAGGGCCATGCTTGCCCTGGAATGGTGCCTTGGCAC
GACCATTCACGACAGCAAACAATATTGGAGGAGTCACCATCATTTTCTTC
AAACCCTTGGAATTGCCTCTGCGGTTGTTTTCTTTACGCTTACCAAGGCT
TACAATCTGTCTTGGGAGGATTTGGTTCCAGTACCTGTAGTCTCTGCGCG
CAACACCAAGCGGCCTAACAAGGCCTCTGCCACAGATACGCTTTGGTCTT
ACTTTCAAAATGCGCAGCACAGAGTGTAGAGTATCGGGTGCCAGAAGTAC
GCCGTTCTGAACAAAGGCCTCGTAAATGGGACCAGCATGGCCATGAATCT
CTTCATCATTGCTGCAATCATCATTCACTTTCTCTGTCTGCACAGCTTCC
ACAATGACTTCATCTTCATCACTGCCGTTATCCTCCTGTGAGTCATCGGA
CCCTTCCATATCATATGATGCTGCAGTCTCATTTTCATTGATCTTCTTCG
CCCATCTTTTGATACGTTTCTCCTTCAGGTCGAGGAGAGTAACGATCTTT
TCGAGTTCCTTCCCAGGGCAAGCTACCCCAGTCTTCTTCAAAATGAACTT
TGCCGCCTTGCAGTACAGGTCACATGTAGGTACTTCGGCCTCTTTCGTCA
TTATCATCGCAGTCGTAGTGTTGGTATCAGTAATCTTCTTCGTCATTATA
TTGTTTTGCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig101:1184669..1185979+

>mRNA_H-akashiwo_Contig101.27.1 ID=mRNA_H-akashiwo_Contig101.27.1|Name=mRNA_H-akashiwo_Contig101.27.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=846bp|location=Sequence derived from alignment at H-akashiwo_Contig101:1184669..1185979+ (Heterosigma akashiwo CCMP452)
ATGTGGTGTATATGTATTCCAGAAGGAGTCATCTGCGCAGTGATAGGGCA
AAAGAGGTTGGTTGCCGTGCTGCATTATAGGGTATTGTATGCTTTGACCT
CAAGAAGACACCTTGTGACACATGAAACCAAGGTTTTTTCCGACTTGAGG
GACTCAAAAACTTCATGGAATTTCTTCAGAGGCTGCCAATACTCATGCAC
TTTCTGGTACTACAAGGTGGCTCAGTTCAACTCTGCCACCATGGCTATGG
GGCACAAAACAAGTGCGGCCATATGCACCTCCTCCGAAAGCCACAAGAGG
CACATAGGCCACACACCGGTGGGCTCTTGGACCATAGAGACAGCTCTTGT
TGCTGGGGCCATACTTGCCAGGGCCGTGCTTACCAGGAGAGTGCATACCA
CGGCCGTGCTTACCAAGGTCAAAGTGCTTTCCAGGACCATGCATATCAGA
GCCGTGTTTCTTCCCGGGGCCGTGCTTGCCAGGGCCGCCCTTGCCGTGCT
CTCCAGGGCCGTGCTTACCAGGACCGTGCGTACCAGGGCTGTGCTTCCCA
AGGCCACGGTGCTTGTTAGGACCACGCATGCCAGGGCCATGCTTGCCCTG
GAATGGTGCCTTGGCACGACCATTCACGACAGCAAACAATATTGGAGGAG
TCACCATCATTTTCTTCAAACCCTTGGAATTGCCTCTGCGGTTGTTTTCT
TTACGCTTACCAAGGCTTACAATCTGTCTTGGGAGGATTTGGTTCCAGTA
CCTGTAGTCTCTGCGCGCAACACCAAGCGGCCTAACAAGGCCTCTGCCAC
AGATACGCTTTGGTCTTACTTTCAAAATGCGCAGCACAGAGTGTAG
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