mRNA_H-akashiwo_Contig1009.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1009.1.1
Unique NamemRNA_H-akashiwo_Contig1009.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1009.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1009contigH-akashiwo_Contig1009:61470..62129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387048.8732684-CDS-H-akashiwo_Contig1009:61469..615341681387048.8732684-CDS-H-akashiwo_Contig1009:61469..61534Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1009 61470..61534 +
1681387048.8829107-CDS-H-akashiwo_Contig1009:61883..619511681387048.8829107-CDS-H-akashiwo_Contig1009:61883..61951Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1009 61884..61951 +
1681387048.8948524-CDS-H-akashiwo_Contig1009:62097..621291681387048.8948524-CDS-H-akashiwo_Contig1009:62097..62129Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1009 62098..62129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1009.1.1prot_H-akashiwo_Contig1009.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1009 61470..62129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1009.1.1

>prot_H-akashiwo_Contig1009.1.1 ID=prot_H-akashiwo_Contig1009.1.1|Name=mRNA_H-akashiwo_Contig1009.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
QILLHEYKVDPNEKHQKDDSPRSEQTALHIAVRLNRIDVARSLLDYGALP
DIRNG
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mRNA from alignment at H-akashiwo_Contig1009:61470..62129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1009.1.1 ID=mRNA_H-akashiwo_Contig1009.1.1|Name=mRNA_H-akashiwo_Contig1009.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=660bp|location=Sequence derived from alignment at H-akashiwo_Contig1009:61470..62129+ (Heterosigma akashiwo CCMP452)
CAAATCCTTCTTCATGAGTATAAAGTGGACCCTAACGAAAAGCACCAAAA
AGATGACAGTCCCAGGTGTTATATACTTTTATCATATAATACCGCAGAAA
CTGTCCCCAAGCATCATGCCAACATTTTCCGTAAAAGTCATCAGTATCGA
TTGGCTTGGCTGGCTGACCCTTTAATCGTTGTGTATTTGTATTTGTTGTA
CACATGATATTTATTTATTTATTTATTATTTAGTTGTCATGGACTTAAAA
TGATTAAAAACCTTTGTCATATTGCCTTCTTGGCAGTATGGAGCTGTACT
CGCTGATGATGGAAGCGGGTTTTCTGTTCAAACCCACACCCTGCAATATT
TTCAATTTATTCTGGTGTATAATTGATGCTTTTATTTTCTGTGTACATGC
ATGAAAAAACTTAGATCGGAGCAGACTGCCCTTCACATTGCAGTTCGTTT
GAATCGGATCGATGTTGCTAGGTCTTTACTGGGTAAGTTGATGCCAAATT
ATAATGGACTACTGCTCGGTGTATGTCCATATCCATGATTGGTTGGCCGG
ATATTGAAGAAGAGCTCATCGCACATCTTTTTGCTTGTTGCTCTCACATC
CTTTGTTATGACATTTTCTGTTTGATAGATTACGGCGCTTTACCAGATAT
TAGAAATGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1009:61470..62129+

>mRNA_H-akashiwo_Contig1009.1.1 ID=mRNA_H-akashiwo_Contig1009.1.1|Name=mRNA_H-akashiwo_Contig1009.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=165bp|location=Sequence derived from alignment at H-akashiwo_Contig1009:61470..62129+ (Heterosigma akashiwo CCMP452)
CAAATCCTTCTTCATGAGTATAAAGTGGACCCTAACGAAAAGCACCAAAA
AGATGACAGTCCCAGATCGGAGCAGACTGCCCTTCACATTGCAGTTCGTT
TGAATCGGATCGATGTTGCTAGGTCTTTACTGGATTACGGCGCTTTACCA
GATATTAGAAATGGG
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