mRNA_H-akashiwo_Contig1008.1.1 (mRNA) Heterosigma akashiwo CCMP452
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1008.1.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK) HSP 1 Score: 496 bits (1276), Expect = 1.520e-175 Identity = 239/253 (94.47%), Postives = 250/253 (98.81%), Query Frame = 1 Query: 1 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLVVSKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAANF 759 LSQTSFIKDALAKFGLDYLPACKTP+DHTVDLTPTPGF+A+LSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQ NPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSD+DFCNDR+DGKSVTGY+LFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLL EMGCPQH+PTPVVEDNSACVEWAND++V+KRNRHFHVSYHLAKEQVSLGTIRMF+IKTHDQVADILTKALNAANF Sbjct: 88 LSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANF 340
BLAST of mRNA_H-akashiwo_Contig1008.1.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK) HSP 1 Score: 216 bits (549), Expect = 9.850e-61 Identity = 109/254 (42.91%), Postives = 159/254 (62.60%), Query Frame = 1 Query: 1 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFEAKLS--DANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLVVSKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAAN 756 LSQ SFI++A KF + P++ +D+ +LS +A +RS+VGT+ W+A WT PE+A+++H L + ++P A RYL T+ + + LGG L L A++DADFC++R G+S +G+ +FLG +PI+WSS++Q VT +T EAEY++LR+AV D+MWL+ LL +G Q P+ EDN AC+ WAND VSK RH HVSYH KE V I + ++ T Q+AD+ TK L+ N Sbjct: 733 LSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNN 985
BLAST of mRNA_H-akashiwo_Contig1008.1.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK) HSP 1 Score: 190 bits (483), Expect = 1.940e-56 Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 1 Query: 1 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYL 285 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGF+A+LSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQ NPEPKHFEAVQRAFRYL Sbjct: 174 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268
BLAST of mRNA_H-akashiwo_Contig1008.1.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA) HSP 1 Score: 174 bits (440), Expect = 1.680e-48 Identity = 97/254 (38.19%), Postives = 143/254 (56.30%), Query Frame = 1 Query: 1 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLT----PTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLV--LRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLVVSKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKAL 744 L Q +I D + +F TPID ++ +T P E + +RS++G+L+++A TRP++A AV +L R NP +H++A + RYLKGT++ + GG + L A+SDAD+ +DR D +SV+G VL L AP+VW + Q V ST EAEY+AL VK+ MW R LL +G Q T + EDN + A + R +H + YH +E++ G I + +I T +QVAD LTK L Sbjct: 122 LRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 375
BLAST of mRNA_H-akashiwo_Contig1008.1.1 vs. uniprot
Match: A0A6A4DK21_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DK21_9STRA) HSP 1 Score: 171 bits (432), Expect = 3.450e-48 Identity = 95/254 (37.40%), Postives = 141/254 (55.51%), Query Frame = 1 Query: 1 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLT----PTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLV--LRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLVVSKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKAL 744 L Q +I D + +F TPID ++ +T P E + +RS++G+L+++A TRP++A AV +L R NP +H++A + RYLKGT++ + G + L A+SDAD+ +DR D +SV+G VL L AP+VW + Q V ST E EY+AL VK+ MW R LL +G Q T + EDN + A + R +H + YH +E++ G I + +I T +QVAD LTK L Sbjct: 42 LRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQAEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFDGKMPPELIAYSDADWGSDRDDRRSVSGTVLMLFSAPVVWKTGFQKTVALSTTETEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 295
BLAST of mRNA_H-akashiwo_Contig1008.1.1 vs. uniprot
Match: A0A2N9HCU5_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HCU5_FAGSY) HSP 1 Score: 180 bits (456), Expect = 5.150e-48 Identity = 98/249 (39.36%), Postives = 139/249 (55.82%), Query Frame = 1 Query: 1 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGD--LVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLVVSKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKA 741 LSQ + D L+K GL TP++ V L PT G LSDA LYR +VG+L ++ TRP+LA+AVH + + S P H+ AV R RY+KGT L L LRA++DAD+ D ID +S TGY LG + I W SK Q V S+ EAEY AL A +++WLR LL +MG PQ TP+ DN + + ++ V +R +H + H + + + + + + DQ+AD+ TK+ Sbjct: 775 LSQAKYASDLLSKAGLTDSKTVFTPLELNVKLNPTDG--EPLSDATLYRQLVGSLIYLTV-TRPDLAYAVHLVSQFMSAPRSTHYAAVLRILRYIKGTLFHGLHFSAQSSLELRAYADADWAGDPIDRRSTTGYCFLLGSSLISWRSKKQSVVARSSTEAEYRALADATSELLWLRWLLTDMGAPQTTSTPIHCDNRSAIHITHNDVFHERTKHIEIDCHFIRHHLQQSALHLLSVSSEDQLADVFTKS 1020
BLAST of mRNA_H-akashiwo_Contig1008.1.1 vs. uniprot
Match: A0A8D8ANK3_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8ANK3_CULPI) HSP 1 Score: 171 bits (434), Expect = 2.090e-47 Identity = 98/252 (38.89%), Postives = 142/252 (56.35%), Query Frame = 1 Query: 1 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGG--DLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLVVSKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNA 750 L Q +FI + +FG+D K P+D G KL+D Y S++G+L +++ TRP++A +V L R S P + +R RYL T L LGG D L +SDAD+ D D KS +GY+ LG A + W+SK QG V+TST+EAEY+AL A +D +WLRSLL ++ Q PT + EDN +C+++A KR++H YH +E TI++ + + D +ADILTK L + Sbjct: 151 LKQQAFINKLVKRFGMDGAKGSKFPMDP--GYFKVSGSSKKLADNQEYHSLIGSLLYLSTHTRPDIAASVGILSRKVSCPSQLDWTEARRILRYLISTADHRLVLGGAEDFKLVGYSDADWAGDSADRKSCSGYLFRLGGATVNWTSKKQGCVSTSTMEAEYVALSQAAQDAVWLRSLLEDINEKQLRPTVIFEDNRSCLDFAALDQQKKRSKHIDTRYHYTRELCLNNTIKLEYCASEDMIADILTKPLGS 400
BLAST of mRNA_H-akashiwo_Contig1008.1.1 vs. uniprot
Match: A0A8H4R3V9_9AGAR (Uncharacterized protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4R3V9_9AGAR) HSP 1 Score: 178 bits (451), Expect = 2.660e-47 Identity = 101/261 (38.70%), Postives = 146/261 (55.94%), Query Frame = 1 Query: 1 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFEAKLS-----DANL---YRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGG--DLV---LRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLVVSKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKAL 744 LSQT FI L KFGL TP+D V L + ++S D L Y +++G+L ++A TRP++A+AVH+L + NP+PKH+ AV+R FRYLKGT++ L GG DL+ L + DAD+ + D KS++GY + + + WSSK Q V ST EAEY+A K ++W RSLL E+ P + + DN A + A R +H ++YH ++ V+ GTI M ++ T VAD+ TK L Sbjct: 1140 LSQTHFIDKLLVKFGLQDANPVSTPMDPNVKLDDEDSKDGEVSAEGEQDTRLTYGYATLIGSLMYLALGTRPDIAYAVHRLAQFTQNPKPKHWTAVKRIFRYLKGTRAHKLTFGGLQDLLSNDLNIYCDADWASGA-DRKSISGYAIIIAGGAVAWSSKKQNTVALSTGEAEYVAATHVAKQVLWHRSLLRELNFPLSTTSTIFSDNQAALSIARHPEFHARTKHIDIAYHFLRDLVNDGTITMVYVNTEYNVADVFTKGL 1399
BLAST of mRNA_H-akashiwo_Contig1008.1.1 vs. uniprot
Match: UPI001035CE32 (uncharacterized protein LOC114320808 n=3 Tax=Camellia sinensis TaxID=4442 RepID=UPI001035CE32) HSP 1 Score: 170 bits (430), Expect = 5.050e-47 Identity = 99/249 (39.76%), Postives = 137/249 (55.02%), Query Frame = 1 Query: 1 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGG--DLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLVVSKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKA 741 LSQ + D L + GL TP++ LTP G LSDA LYR +VG+L ++ TRP++A+AVH + + S P H+ A+ R RYLKGT L L LRAFSDAD+ D D +S T + FLGD+ I W SK Q S+ EAEY AL ++++WLR LLA+MG T + DN + ++ A++ V R +H + H ++ V+ GT+ I + DQ ADI TKA Sbjct: 135 LSQAKYTSDLLTRAGLTDCKTASTPLEPQSRLTPLDG--TLLSDATLYRQLVGSLVYLTV-TRPDIAYAVHIVNQFMSAPRTTHYAALIRIIRYLKGTMFHGLHYSARSSLQLRAFSDADWPGDPTDRRSTTWFCFFLGDSLISWCSKKQSLTARSSTEAEYRALADTTQELLWLRWLLADMGVTSSGATALFCDNHSALQIAHNDVFHDRTKHIEIDCHFIRQHVTHGTVHPHPISSVDQPADIFTKA 380
BLAST of mRNA_H-akashiwo_Contig1008.1.1 vs. uniprot
Match: A0A2K3MW90_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MW90_TRIPR) HSP 1 Score: 176 bits (445), Expect = 1.620e-46 Identity = 100/255 (39.22%), Postives = 143/255 (56.08%), Query Frame = 1 Query: 1 LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGD--LVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLVVSKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAANF 759 LSQ + D L++ G+ TP++ LTP G L DA YR +VG+L ++ TRP++A+AVHK+ + + P HF AV R RY+KGT LR + LVL +SDAD+ D D S TGY FLG + I W SK Q V+ S+ E+EY AL A +++WLR LL +MG Q T + DN + ++ +++ V +R +H + HL + V+ GTIR+ I + DQ ADI TK + F Sbjct: 860 LSQAKYASDLLSRAGITDCKTELTPLEVNCKLTPLDG--TPLEDATRYRQLVGSLVYLTV-TRPDIAYAVHKVSQFMAAPRSSHFSAVLRIIRYVKGTLFHGLRFSANSSLVLSGYSDADWGGDPTDRCSTTGYCFFLGSSLISWRSKKQTVVSRSSTESEYRALADAASELLWLRWLLEDMGVTQSSATTLHCDNKSAIQISHNDVFHERTKHIEIDCHLVRYHVTKGTIRLISIPSVDQTADIFTKTHHPMRF 1111 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1008.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1008.1.1 >prot_H-akashiwo_Contig1008.1.1 ID=prot_H-akashiwo_Contig1008.1.1|Name=mRNA_H-akashiwo_Contig1008.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=253bp LSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSback to top mRNA from alignment at H-akashiwo_Contig1008:3802..4560+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1008.1.1 ID=mRNA_H-akashiwo_Contig1008.1.1|Name=mRNA_H-akashiwo_Contig1008.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=759bp|location=Sequence derived from alignment at H-akashiwo_Contig1008:3802..4560+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1008:3802..4560+ >mRNA_H-akashiwo_Contig1008.1.1 ID=mRNA_H-akashiwo_Contig1008.1.1|Name=mRNA_H-akashiwo_Contig1008.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=759bp|location=Sequence derived from alignment at H-akashiwo_Contig1008:3802..4560+ (Heterosigma akashiwo CCMP452)back to top |