mRNA_H-akashiwo_Contig1004.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1004.7.1
Unique NamemRNA_H-akashiwo_Contig1004.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1004.7.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 385 bits (989), Expect = 6.090e-133
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 1
Query:    1 RPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVL*AFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALSSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE 576
            RPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVL AFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLAL SAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE
Sbjct:  150 RPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE 341          
BLAST of mRNA_H-akashiwo_Contig1004.7.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 177 bits (448), Expect = 6.970e-48
Identity = 85/189 (44.97%), Postives = 122/189 (64.55%), Query Frame = 1
Query:    4 PELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVL*AFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALSSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAAN 570
            PE+A+++H L +   +P      A     RYL  T+ + + LGG L L A++D+DFC++R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++L +AV D+MWL+ LLE +G  Q    P+ EDN AC+ WAND  V+K  RH HVSYH  KE V    I + Y+ T  Q+AD+ TK L+  N
Sbjct:  798 PEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQG-CVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNN 985          
BLAST of mRNA_H-akashiwo_Contig1004.7.1 vs. uniprot
Match: UPI0009F3042F (uncharacterized protein LOC110102714 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F3042F)

HSP 1 Score: 157 bits (396), Expect = 5.350e-44
Identity = 77/193 (39.90%), Postives = 119/193 (61.66%), Query Frame = 1
Query:    1 RPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGD-LVL*AFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALSSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE 576
            RP+L++ V++  +    P    FEA++R  RYL+GT    L + GD LVL ++ DSD+  D  D KS TG+  FLG + + WS K Q  +  S+ EAEY A++S   +I+WLR LL E+GC Q EPT +  DN++ +  AN+ + + R +H  +  H  ++ +  G+I++ YI T DQ+AD+ TKAL +  F+
Sbjct:   82 RPDLSYVVNRACQQMHQPMVSDFEALKRILRYLQGTIQHGLPINGDSLVLKSYVDSDWAGDHTDRKSTTGFCNFLGTSLVSWSVKKQTTIARSSTEAEYQAIASVTMEIIWLRQLLNELGCSQIEPTKLYCDNTSAIALANNPVYHARTKHIEIDCHFIRDCIKNGSIQVHYISTQDQLADLFTKALPSTRFK 274          
BLAST of mRNA_H-akashiwo_Contig1004.7.1 vs. uniprot
Match: A0A507DL48_9FUNG (Uncharacterized protein n=3 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DL48_9FUNG)

HSP 1 Score: 149 bits (376), Expect = 3.500e-41
Identity = 78/198 (39.39%), Postives = 123/198 (62.12%), Query Frame = 1
Query:    4 PELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLV-L*AFSDSDFCNDRVDGKSVTGYILFLGDA-PIVWSSKLQGAVTTSTVEAEYLALSSAVKDIMWLRSLLEEMGCPQH-----EPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE 576
            P++A  V  L R   NP P+H +A +R  RYL+GT + SL +GG+ V L  +SD+D+ N+ +D +S+TGY+  +G+A P+ W+SK Q  V  S+ EAEY+ALS A ++ +WLRSLL ++  P++      PT + EDN +C+  A + + + R +H  + +H  ++ V    I + Y+ T + VAD LTK L A  F+
Sbjct:   51 PDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSTYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFCIGNAGPVTWASKRQPTVALSSTEAEYMALSFATQETIWLRSLLRKLQIPEYLNESARPTTIYEDNQSCISLAMNPVHHARTKHIDIRHHFIRDHVD-KEIHLEYLPTAEMVADSLTKPLPAPAFK 247          
BLAST of mRNA_H-akashiwo_Contig1004.7.1 vs. uniprot
Match: A0A2I0W4P1_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W4P1_9ASPA)

HSP 1 Score: 152 bits (383), Expect = 6.120e-41
Identity = 75/192 (39.06%), Postives = 116/192 (60.42%), Query Frame = 1
Query:    1 RPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG-DLVL*AFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALSSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANF 573
            RP++ + V+K  +    P   +F+A++R  RY+KGT +  L L      L +F DSD+  D+ D KS TGY  FLG + + W  K Q  +  S+ EAEY AL++A  D++W+R LL E+GCPQ+ PT +  DN++ +  AN+ + + R +H  V  H  +E +   +I++ +I T DQ+ADI TKAL+   F
Sbjct:  179 RPDITYAVNKACQFMHQPTDANFDALKRILRYIKGTLNIGLPLSRHSFDLSSFVDSDWTGDQKDRKSTTGYCTFLGRSLVTWCVKKQSTIARSSTEAEYRALAAAAADLIWIRQLLHELGCPQNNPTKLFCDNTSAIALANNPVFHARTKHIEVDCHYIRECIKNNSIQVHHISTKDQIADIFTKALSIVRF 370          
BLAST of mRNA_H-akashiwo_Contig1004.7.1 vs. uniprot
Match: UPI001F04687D (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04687D)

HSP 1 Score: 146 bits (368), Expect = 1.130e-40
Identity = 72/194 (37.11%), Postives = 114/194 (58.76%), Query Frame = 1
Query:    1 RPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDL--VL*AFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALSSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE 576
            RP++A ++  L +   +P   HF+ V+R  RY+KGT S  L+   D    L  +SD+D+  +  D +S +GY+  L ++ I WSSK Q  V  ST EAEY+ALS A ++++WLR LL ++G     PT V EDN   +E A +   + R +H  V+YH  +E++    +++ Y  + D +ADI+TK L+   F+
Sbjct:   13 RPDIAASIGVLSQFMSDPSKTHFQGVKRVLRYIKGTISYGLKFSCDKNDELHGYSDADYAGNLDDRRSTSGYVFKLANSTISWSSKKQSTVARSTTEAEYVALSQATQEVIWLRRLLSDLGSKPVSPTTVHEDNQGAIEIARNPKFHNRTKHIDVAYHFVRERILSKEVKVCYCPSKDMIADIMTKGLSKDQFQ 206          
BLAST of mRNA_H-akashiwo_Contig1004.7.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 155 bits (391), Expect = 3.520e-40
Identity = 82/194 (42.27%), Postives = 118/194 (60.82%), Query Frame = 1
Query:    1 RPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRL--GGDLVL*AFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALSSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE 576
            RP+L F+V+ + R   +P  +H  AV+R  RY++GT    ++   GG   L  F DSD+  D  D KS +GY+  LG   I W+SK Q  VT ST EAE+++ S      +WLR++LEE+GC Q   T V  DNS+ ++ + + +++ R++H HV YH  +E V  GTIR+ Y  T DQVADI+TKA+    FE
Sbjct: 1128 RPDLIFSVNLVSRYMESPNEQHLLAVKRILRYVQGTLDLGIQYERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAVKREVFE 1321          
BLAST of mRNA_H-akashiwo_Contig1004.7.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 149 bits (377), Expect = 4.240e-40
Identity = 77/188 (40.96%), Postives = 112/188 (59.57%), Query Frame = 1
Query:    1 RPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLV--L*AFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALSSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKAL 558
            RP++A  V +L R   NP  +H++A  +  RYLKGT++  +  GG +   L A+SD+D+ +DR D +SV+G +L L  AP+VW +  Q  V  ST EAEY+AL+  VK+ MW R LL+ +G  Q   T + EDN   +  A +     R +H  + YH  +E++  G I + YI T +QVAD LTK L
Sbjct:  188 RPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 375          
BLAST of mRNA_H-akashiwo_Contig1004.7.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB)

HSP 1 Score: 145 bits (365), Expect = 8.750e-40
Identity = 70/192 (36.46%), Postives = 114/192 (59.38%), Query Frame = 1
Query:    1 RPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLV-L*AFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALSSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANF 573
            RP++ + V ++ R   NP  +H++AV+R  RY++GT+   ++  G  +   A+SD+DF  D    +S TGYI  +   P++WSS  Q  ++ ST EAEY+A S A +++ WLR LL+E+      PTP+  DN + +    +   +K+ +H  + YH  +E V  G I++ Y+ T +Q+ADILTKA+    F
Sbjct:   52 RPDIMYAVSQVSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKYSGSHIDFTAYSDADFAGDVDTRRSTTGYITLMAGGPVIWSSHRQKCISRSTTEAEYVAASDASQEVTWLRILLQELCVDLKNPTPLHMDNQSAIRLTKNTEHHKKTKHIDIKYHYIRECVEHGAIKIIYVCTEEQLADILTKAVPRDKF 243          
BLAST of mRNA_H-akashiwo_Contig1004.7.1 vs. uniprot
Match: A0A4Z0A525_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A525_9AGAM)

HSP 1 Score: 146 bits (368), Expect = 1.130e-39
Identity = 75/184 (40.76%), Postives = 106/184 (57.61%), Query Frame = 1
Query:    1 RPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGD---LVL*AFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALSSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADI 543
            RP+L++ V +L +   NP   H+ A +R  RY+KGT   +L  GGD    V   ++D+D  ND    +S++GY  FL   PI WSSK Q  V  ST  AEYLA++ A K+ +WLRSLL E+  PQ  PT +  DN A +  + + + + R +H  + YH  +E V  G IR+ YI T +  ADI
Sbjct:  115 RPDLSYAVQRLSQFMSNPGIAHYAAAKRVLRYVKGTLDLALVYGGDDGPWVPIGYADADHANDLDSRRSISGYAFFLSGTPISWSSKKQPTVADSTAVAEYLAIAHATKEALWLRSLLGELDFPQDSPTLIHCDNQASIAMSKEQVFHARTKHVDIKYHFIREHVDRGQIRLEYIPTAENTADI 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1004.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK6.090e-13398.96Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1P1_HETAK6.970e-4844.97Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI0009F3042F5.350e-4439.90uncharacterized protein LOC110102714 n=1 Tax=Dendr... [more]
A0A507DL48_9FUNG3.500e-4139.39Uncharacterized protein n=3 Tax=Powellomyces hirtu... [more]
A0A2I0W4P1_9ASPA6.120e-4139.06Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F04687D1.130e-4037.11secreted RxLR effector protein 161-like n=1 Tax=Xe... [more]
Q9C7Y1_ARATH3.520e-4042.27Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]
A0A6A3JMT1_9STRA4.240e-4040.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C9BC1AB8.750e-4036.46secreted RxLR effector protein 161-like n=1 Tax=Ve... [more]
A0A4Z0A525_9AGAM1.130e-3940.76Uncharacterized protein (Fragment) n=1 Tax=Hericiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1004contigH-akashiwo_Contig1004:365518..366093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3750.XP_008355345.1
PFAMsRVT_2,Retrotran_gag_3,Retrotrans_gag
Model size576
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.96e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YXH@33090|Viridiplantae
DescriptionDNA binding
Cds size252
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387047.9711878-CDS-H-akashiwo_Contig1004:365517..3657691681387047.9711878-CDS-H-akashiwo_Contig1004:365517..365769Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1004 365518..365769 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387047.9801145-UTR-H-akashiwo_Contig1004:365769..3660931681387047.9801145-UTR-H-akashiwo_Contig1004:365769..366093Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1004 365770..366093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1004.7.1prot_H-akashiwo_Contig1004.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1004 365518..365769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1004.7.1

>prot_H-akashiwo_Contig1004.7.1 ID=prot_H-akashiwo_Contig1004.7.1|Name=mRNA_H-akashiwo_Contig1004.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=84bp
MWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLA
KEQVSLGTIRMFYIKTHDQVADILTKALNAANFE
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mRNA from alignment at H-akashiwo_Contig1004:365518..366093-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1004.7.1 ID=mRNA_H-akashiwo_Contig1004.7.1|Name=mRNA_H-akashiwo_Contig1004.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=576bp|location=Sequence derived from alignment at H-akashiwo_Contig1004:365518..366093- (Heterosigma akashiwo CCMP452)
AGACCGGAGCTTGCTTTTACAGTCCACAAGCTTCAGCGTACTCAAATTAA TCCGGAGCCCAAGCATTTTGAAGCAGTCCAGCGTGCATTTCGGTACCTGA AAGGCACCCAGTCTGAGTCCCTGAGGTTAGGTGGTGATCTAGTGCTCTGA GCTTTTTCCGACTCAGATTTCTGTAATGACCGTGTTGATGGGAAGTCAGT TACTGGCTATATTCTCTTTCTTGGTGATGCACCTATTGTCTGGTCTTCAA AACTTCAGGGTGCTGTCACTACCTCTACTGTGGAAGCTGAATATTTGGCT CTTAGTTCAGCAGTTAAAGATATCATGTGGCTCCGCTCTCTTCTTGAAGA AATGGGGTGTCCCCAGCATGAACCCACTCCTGTTGTTGAGGACAACAGTG CCTGTGTTGAGTGGGCCAATGACATGTTGGTTAATAAAAGAAATAGGCAC TTTCATGTGTCTTATCATCTTGCTAAGGAGCAAGTGAGCCTTGGTACTAT CAGAATGTTTTATATCAAAACTCATGATCAAGTGGCTGATATTCTGACCA AGGCCCTGAATGCAGCGAATTTTGAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1004:365518..366093-

>mRNA_H-akashiwo_Contig1004.7.1 ID=mRNA_H-akashiwo_Contig1004.7.1|Name=mRNA_H-akashiwo_Contig1004.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=252bp|location=Sequence derived from alignment at H-akashiwo_Contig1004:365518..366093- (Heterosigma akashiwo CCMP452)
ATGTGGCTCCGCTCTCTTCTTGAAGAAATGGGGTGTCCCCAGCATGAACC
CACTCCTGTTGTTGAGGACAACAGTGCCTGTGTTGAGTGGGCCAATGACA
TGTTGGTTAATAAAAGAAATAGGCACTTTCATGTGTCTTATCATCTTGCT
AAGGAGCAAGTGAGCCTTGGTACTATCAGAATGTTTTATATCAAAACTCA
TGATCAAGTGGCTGATATTCTGACCAAGGCCCTGAATGCAGCGAATTTTG
AA
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