mRNA_H-akashiwo_Contig100.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.5.1
Unique NamemRNA_H-akashiwo_Contig100.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig100.5.1 vs. uniprot
Match: A0A7S3XSI7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSI7_HETAK)

HSP 1 Score: 145 bits (367), Expect = 5.750e-41
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 1
Query:    1 NNPVMAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAFSAAARPEHHCLE 222
            NNPVMAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAF+   RPEHHCLE
Sbjct:  114 NNPVMAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAFALLLRPEHHCLE 187          
BLAST of mRNA_H-akashiwo_Contig100.5.1 vs. uniprot
Match: A0A7S4D686_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D686_HETAK)

HSP 1 Score: 134 bits (336), Expect = 6.120e-38
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 1
Query:    1 NNPVMAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAFSAAARPEHHCL 219
            NNPVMAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAA+++   ARPEH  L
Sbjct:  114 NNPVMAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAESWRLMARPEHQLL 186          
BLAST of mRNA_H-akashiwo_Contig100.5.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.400e-15
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   10 VMAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAFSAAARPEHHCL 219
            V+   L GT+ L+LLLAA  HDYRHPG+NN  LV     L++TYNDQSVLENFHA++AF     P+++ L
Sbjct: 1603 VVTHQLQGTNALSLLLAAIMHDYRHPGVNNMYLVKRFDDLSVTYNDQSVLENFHASEAFRVLMDPKYNIL 1672          
BLAST of mRNA_H-akashiwo_Contig100.5.1 vs. uniprot
Match: D7G4U4_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.880e-15
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   13 MAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAFSAAARP 204
            +A  +  THGLALL+AA  HDYRHPG+NN  LV    PLA+ YND SVLENFHAA+ F     P
Sbjct:  507 IANTVRSTHGLALLMAAIMHDYRHPGVNNGYLVRDLDPLAVVYNDASVLENFHAAEGFKMVLDP 570          
BLAST of mRNA_H-akashiwo_Contig100.5.1 vs. uniprot
Match: A0A482R7L7_9ARCH (3',5'-cyclic nucleotide phosphodiesterase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R7L7_9ARCH)

HSP 1 Score: 75.9 bits (185), Expect = 2.290e-14
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    7 PVMAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAFSAAARPEHHCL 219
            P ++  LD  +  A+LLA A HD+RHPGL+NA L+    P+A+ YND+SVLENFHAA+ F    +P+++ L
Sbjct:  450 PRLSNILDCWNAFAILLAGALHDFRHPGLSNAYLMKTGDPIAIRYNDESVLENFHAAEGFLVMCQPKYNVL 520          
BLAST of mRNA_H-akashiwo_Contig100.5.1 vs. uniprot
Match: A0A8J5XZ58_DIALT (Phosphodiesterase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XZ58_DIALT)

HSP 1 Score: 75.1 bits (183), Expect = 4.250e-14
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   22 ALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAFSAAARPEHHCL 219
            AL+ +H LALL++AA HD RHPG+ NA LV +  PLA+TYND+SVLE+FH A+AF     P  + L
Sbjct:  540 ALERSHLLALLISAAVHDVRHPGVTNAFLVNSNDPLAITYNDRSVLESFHCAEAFRLMQHPARNLL 605          
BLAST of mRNA_H-akashiwo_Contig100.5.1 vs. uniprot
Match: A0A7S1G7N6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7N6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.790e-13
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    7 PVMAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAF 186
            P +A A+D   GLA LLAAA HD+RHPG+++  L+A  + LA+ YND SVLENFHAA+AF
Sbjct:  282 PRVAAAVDDLDGLATLLAAAVHDFRHPGVSSNFLIATGSELAVRYNDASVLENFHAAEAF 341          
BLAST of mRNA_H-akashiwo_Contig100.5.1 vs. uniprot
Match: A0A7S3ZD61_9EUKA (Phosphodiesterase (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZD61_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 6.990e-13
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   43 LALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAFSAAARP 204
            LA+L AA  HD +HPGLNNA  +A+RAPLA+ YND SVLEN+HAA  F+   RP
Sbjct:  263 LAMLTAALCHDIQHPGLNNAYHIASRAPLAILYNDNSVLENYHAAVTFAVLGRP 316          
BLAST of mRNA_H-akashiwo_Contig100.5.1 vs. uniprot
Match: A0A0N4UFH0_DRAME (3',5'-cyclic-nucleotide phosphodiesterase n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UFH0_DRAME)

HSP 1 Score: 71.2 bits (173), Expect = 8.300e-13
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 NNPVMAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAFSAAARP 204
            ++P +A+ ++  H  A L+AA+ HD  HPG  NA L+  R PLAL YNDQSVLEN H A AF  + +P
Sbjct:  133 DSPTVAKNVEDIHATAALIAASIHDLDHPGRGNAFLINTRQPLALIYNDQSVLENHHVALAFQLSLQP 200          
BLAST of mRNA_H-akashiwo_Contig100.5.1 vs. uniprot
Match: A0A8J5XXL3_DIALT (Phosphodiesterase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XXL3_DIALT)

HSP 1 Score: 70.9 bits (172), Expect = 1.310e-12
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   10 VMAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLENFHAAQAFSAAARPEHHCL 219
            V  + L+  H LA+L  A  HD+RHPG+ N  L+    PLALTYND+SVLEN+HAA+AF      +++ L
Sbjct:  513 VEQRGLEPFHILAVLFGALVHDFRHPGVTNTFLITTADPLALTYNDRSVLENYHAAEAFKLMQHAQYNLL 582          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XSI7_HETAK5.750e-4194.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4D686_HETAK6.120e-3889.04Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z5P1_9STRA1.400e-1555.71Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
D7G4U4_ECTSI1.880e-1559.38Phosphodiesterase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A482R7L7_9ARCH2.290e-1449.303',5'-cyclic nucleotide phosphodiesterase (Fragmen... [more]
A0A8J5XZ58_DIALT4.250e-1456.06Phosphodiesterase n=1 Tax=Diacronema lutheri TaxID... [more]
A0A7S1G7N6_9STRA1.790e-1360.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3ZD61_9EUKA6.990e-1362.96Phosphodiesterase (Fragment) n=1 Tax=Lotharella gl... [more]
A0A0N4UFH0_DRAME8.300e-1350.003',5'-cyclic-nucleotide phosphodiesterase n=1 Tax=... [more]
A0A8J5XXL3_DIALT1.310e-1248.57Phosphodiesterase n=1 Tax=Diacronema lutheri TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:172682..173890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4U4
Preferred namePDE1
PFAMsPDEase_I
Model size224
Max annot lvl2759|Eukaryota
KEGG rclassRC00296
KEGG koko:K13293,ko:K13755,ko:K18437,ko:K19021
KEGG ReactionR00191,R01234
KEGG Pathwayko00230,ko04020,ko04022,ko04024,ko04740,ko04742,ko04924,ko04927,ko04934,ko05032,map00230,map04020,map04022,map04024,map04740,map04742,map04924,map04927,map04934,map05032
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0006935,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0007602,GO:0007610,GO:0007635,GO:0008150,GO:0008340,GO:0009268,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010259,GO:0010446,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010752,GO:0010754,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0032501,GO:0032502,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0046677,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:1901700,GO:1902531,GO:1902532
Exons3
Evalue3.56e-16
EggNOG OGsKOG3688@1|root,KOG3688@2759|Eukaryota
EC3.1.4.17,3.1.4.53
Descriptioncalmodulin-dependent cyclic-nucleotide phosphodiesterase activity
Cds size210
COG categoryL
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.6968522-CDS-H-akashiwo_Contig100:172681..1727531681387046.6968522-CDS-H-akashiwo_Contig100:172681..172753Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 172682..172753 -
1681387046.7101197-CDS-H-akashiwo_Contig100:173135..1731981681387046.7101197-CDS-H-akashiwo_Contig100:173135..173198Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 173136..173198 -
1681387046.717842-CDS-H-akashiwo_Contig100:173803..1738781681387046.717842-CDS-H-akashiwo_Contig100:173803..173878Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 173804..173878 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.7254138-UTR-H-akashiwo_Contig100:173878..1738901681387046.7254138-UTR-H-akashiwo_Contig100:173878..173890Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig100 173879..173890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.5.1prot_H-akashiwo_Contig100.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 172682..173878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.5.1

>prot_H-akashiwo_Contig100.5.1 ID=prot_H-akashiwo_Contig100.5.1|Name=mRNA_H-akashiwo_Contig100.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=70bp
MAQALDGTHGLALLLAAAFHDYRHPGLNNACLVAARAPLALTYNDQSVLE
NFHAAQAFSAAARPEHHCLE
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mRNA from alignment at H-akashiwo_Contig100:172682..173890-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.5.1 ID=mRNA_H-akashiwo_Contig100.5.1|Name=mRNA_H-akashiwo_Contig100.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1209bp|location=Sequence derived from alignment at H-akashiwo_Contig100:172682..173890- (Heterosigma akashiwo CCMP452)
AACAACCCGGTGATGGCCCAGGCGCTGGACGGCACCCACGGGCTGGCCCT GCTGCTCGCCGCCGCCTTCCACGACTACCGCCACCCGGTGCGGGGGCGGC GGGCGGCGGGCGGCGGGCGGCGGGCGGCGGCGGGGGCGGCGGCGGGCGGG CGGGGGCGGCGGGCGGGGGCGTGTCATGCCGTTCTGTGCCGTGCTGTGGG TGGACTTGTGGACGGCGCCCTGGCTGCGGGCGGGCGGGGTCGCCGCGGCG TCTGTGTGCCAGGCCGGTTGCTGGGCGCAGCGCTTTTCAGCACAGTTATA TATCCATTTTCAAAGAAGTTATACATGTTGATCTTGTTGAACTCGTTTTT CGCCCGTGTAAAGAAACGGTTTCTTGGAATGCTGAAGGTGCTTCTTGATT CAGACGCAAGCACATTGTTGTTCTATAACCCATCCATTGGACAAATTATT CACCAAAAAAAAGTGGTAAAAGGCAAATGGTTTAAAGTTCACCAGTAGGG ACAAGTCTGGATTGATGCATATCAACATTTGCTTAACGCCTCAGCATGCA TGCATGTTTACTTGATAGTACATAGTGAAGTGAAAAGAGCATACATATTT TATGTGTAGTTTAGCTCGCCTGCTGCTATATATATGCATGTCCGCTCCCG CTCGCCGCTCCCTTCCCCAAAAAAAAATACACACACACACAGGGCCTGAA CAACGCCTGCCTCGTGGCCGCACGCGCACCACTGGCACTAACCTACAACG ACCAGGTCCTTGTTTTGAAAAATGAAAATGAGGCAGAAATAAATATGATC CAACTTGTGGGCTCCTTGTTGGTAAAGTTTGAAGTGTCTGATGGGACCGC ACAAGGCAGTATTCTGATAGCCCCACGTCCCAAGTCAAATCCAATGCCTT TTGTTTTTCCCTTGGTGGATGAGAGCAAGAAGAACTACAAAAAACTCAAA CAAACACAGGCGGGTTCGGTAGCGTGCGGAACAATTTCTGAACGATAGGT TGATTTTTTCATTCCGGGGCGTATCGAAGCCTTCGCCGCGCCTCCTCGGT GCCGAACTCGACCCAAACCAAAGGGGAGACCCACGAAGCAGCGCCCGCCC GCCCGCCCGCCGCCCCCCTTCCTCCTTCCCTCCCCAGAGCGTGCTGGAGA ACTTCCACGCCGCCCAGGCCTTCAGCGCTGCTGCTCGGCCGGAGCACCAC TGCCTGGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:172682..173890-

>mRNA_H-akashiwo_Contig100.5.1 ID=mRNA_H-akashiwo_Contig100.5.1|Name=mRNA_H-akashiwo_Contig100.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=210bp|location=Sequence derived from alignment at H-akashiwo_Contig100:172682..173890- (Heterosigma akashiwo CCMP452)
ATGGCCCAGGCGCTGGACGGCACCCACGGGCTGGCCCTGCTGCTCGCCGC
CGCCTTCCACGACTACCGCCACCCGGGCCTGAACAACGCCTGCCTCGTGG
CCGCACGCGCACCACTGGCACTAACCTACAACGACCAGAGCGTGCTGGAG
AACTTCCACGCCGCCCAGGCCTTCAGCGCTGCTGCTCGGCCGGAGCACCA
CTGCCTGGAG
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