mRNA_H-akashiwo_Contig100.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.4.1
Unique NamemRNA_H-akashiwo_Contig100.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig100.4.1 vs. uniprot
Match: A0A7S3XSI7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSI7_HETAK)

HSP 1 Score: 245 bits (626), Expect = 3.100e-79
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = -1
Query:    1 GPGGGPDFEEPGRRLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLVPFSKCCKEDRWTALVDANYA 333
            GPGGGPDFEEPGRRLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLVPFSKCCKEDRWTALVDANYA
Sbjct:  230 GPGGGPDFEEPGRRLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLVPFSKCCKEDRWTALVDANYA 340          
BLAST of mRNA_H-akashiwo_Contig100.4.1 vs. uniprot
Match: D8LTM6_ECTSI (Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM6_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 5.050e-34
Identity = 62/109 (56.88%), Postives = 75/109 (68.81%), Query Frame = -1
Query:    4 PGGGPDFEEPGRRLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLVPFSKCCKEDRWTALVDANY 330
            P GG   +    ++LL QM +K ADV HP KPW LH RW+RLI EEF RQGD E  +GVP+SPLC R  G N AKSQCDFV+FVVRPC   FS+ CK+  W   +++NY
Sbjct:  508 PKGGATKDPLQAQILLMQMVIKVADVSHPMKPWDLHERWTRLITEEFHRQGDLEAEKGVPVSPLCSRE-GHNQAKSQCDFVNFVVRPCATVFSEFCKDRIWVTTLESNY 615          
BLAST of mRNA_H-akashiwo_Contig100.4.1 vs. uniprot
Match: A0A7S3XSN1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSN1_HETAK)

HSP 1 Score: 122 bits (307), Expect = 1.910e-32
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = -1
Query:    4 PGRRLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLVPFSKCCKEDRWTALVDANY 303
            P  ++LL Q A+KCAD+ HPAKPWALH +WS LI  EF+ QG  E R G+P+SPLCD+ A  +  KSQC+F+DF+VRPC  PF++ C+   W   V+ NY
Sbjct:   36 PDSQVLLMQFAIKCADICHPAKPWALHEQWSDLITREFFAQGAREARAGLPVSPLCDQ-AKVDIPKSQCNFIDFLVRPCFEPFAQFCEVQEWMDNVEDNY 134          
BLAST of mRNA_H-akashiwo_Contig100.4.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.230e-32
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = -1
Query:    4 FEEPGRRLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLVPFSKCCKEDRWTALVDANY 312
            FE    ++LL Q+ LK ADV H  KPW +H RWS +I EEF++QGD ER +G+ ISPLCDR A GN AKSQCDF+DF+VRPC+  FS  C+   WT  ++ N+
Sbjct: 1716 FESANSQILLLQVILKVADVSHATKPWDIHRRWSDMITEEFFKQGDLERGQGLQISPLCDR-AQGNLAKSQCDFIDFIVRPCVTMFSDFCETTLWTDTLNTNF 1817          
BLAST of mRNA_H-akashiwo_Contig100.4.1 vs. uniprot
Match: D7G4U4_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U4_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.350e-30
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = -1
Query:    4 RLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLVPFSKCCKEDRWTALVDANY 294
            ++L+ QM LK ADV HP KPW +H +WS L+ EEF++QGD E  RG+ +SPLCDR    N  KSQCDF+DF+VRPC+  FS  CK   W   +D+N+
Sbjct:  644 QILVLQMVLKVADVAHPCKPWEVHHKWSELVTEEFFKQGDKEAARGLAVSPLCDRR-DQNLPKSQCDFIDFIVRPCVTIFSMYCKVTTWNDQLDSNF 739          
BLAST of mRNA_H-akashiwo_Contig100.4.1 vs. uniprot
Match: A0A7S3XXI8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXI8_HETAK)

HSP 1 Score: 116 bits (291), Expect = 2.290e-29
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = -1
Query:    4 PGGGPDFEEPGRRLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLVPFSKCCKEDRWTALVDANY 330
            PG G   +    +LLL Q A+KCAD+ HP++PW +H +W+ LI+EEF+ QG  E+  G+PIS LCDR A     KSQCDF++F+V+PCL PFS+  +E  W   ++ NY
Sbjct:  102 PGSGFSKDNSESQLLLMQFAIKCADICHPSRPWDIHCQWTHLISEEFFAQGAREKEEGLPISFLCDR-ATVVLPKSQCDFINFLVKPCLGPFSEFAEETEWMDHLNLNY 209          
BLAST of mRNA_H-akashiwo_Contig100.4.1 vs. uniprot
Match: A0A7S1C4N6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4N6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.210e-27
Identity = 59/106 (55.66%), Postives = 68/106 (64.15%), Query Frame = -1
Query:    7 GPDF-EEPGRRLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLVPFSKCCKEDRWTALVDAN 321
            G DF  +    LLL QMALKCADVGHPA+P  LH +WS LI+ EF  QGD ER  G+PISPLCDR    + AKSQ  F++FVVRPC  PFS  C    W   +  N
Sbjct:  789 GDDFGSDDNDMLLLLQMALKCADVGHPARPLPLHEKWSNLISREFHMQGDKERVLGLPISPLCDRD-NFDLAKSQQGFIEFVVRPCFEPFSAFCGVTTWNEHITHN 893          
BLAST of mRNA_H-akashiwo_Contig100.4.1 vs. uniprot
Match: A0A7S1CCP6_9STRA (Phosphodiesterase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCP6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.000e-23
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   49 RLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLVPFSK 294
            R+ +  MA+KCADVGHPA+P+ +H +WS++I  EF+ QGD ER+RG+ ISPLCDR    N +KSQ  F+DFVVRP    FS+
Sbjct:  658 RMAVMAMAIKCADVGHPARPFHVHLQWSKMITAEFYAQGDLERQRGMEISPLCDRR-NHNLSKSQLGFIDFVVRPAFALFSR 738          
BLAST of mRNA_H-akashiwo_Contig100.4.1 vs. uniprot
Match: A0A6U3TVK1_9STRA (Phosphodiesterase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3TVK1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.300e-22
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = -1
Query:    7 PDFEEPGRRLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPC----LVPFSKCCK-EDRWTALVDAN 318
            P  E+    +L+ QMALKCAD+ HP K W++H RWS LI EEF+ QGDAE+  G+P+S LCDR         Q  F+DFVVRPC    +  FSK    E  W   ++AN
Sbjct:  399 PCAEDEEGNILVLQMALKCADISHPTKKWSVHHRWSLLIVEEFFNQGDAEKLAGLPVSALCDRQ-NDQIHNMQIGFIDFVVRPCFSAVIAYFSKEPNFEHAWLQQLNAN 506          
BLAST of mRNA_H-akashiwo_Contig100.4.1 vs. uniprot
Match: G0YFD7_MYTED (Putative phosphodiesterase 1 (Fragment) n=1 Tax=Mytilus edulis TaxID=6550 RepID=G0YFD7_MYTED)

HSP 1 Score: 89.4 bits (220), Expect = 3.980e-20
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = -1
Query:   70 RLLLTQMALKCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRP 294
            +     M L CAD+GHPAK W LH +W+  + EEF+RQGD E+  G+P SPLCDR +G   A+SQ  F+DF+V P
Sbjct:   72 KAKALSMVLHCADIGHPAKEWNLHYKWTNQLLEEFFRQGDREKELGLPFSPLCDR-SGVLVAESQIGFIDFIVDP 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XSI7_HETAK3.100e-79100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D8LTM6_ECTSI5.050e-3456.88Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S3XSN1_HETAK1.910e-3254.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z5P1_9STRA3.230e-3255.34Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
D7G4U4_ECTSI2.350e-3053.61Phosphodiesterase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S3XXI8_HETAK2.290e-2948.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1C4N6_9STRA1.210e-2755.66Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1CCP6_9STRA1.000e-2356.10Phosphodiesterase n=1 Tax=Bicosoecida sp. CB-2014 ... [more]
A0A6U3TVK1_9STRA1.300e-2247.71Phosphodiesterase n=1 Tax=Dictyocha speculum TaxID... [more]
G0YFD7_MYTED3.980e-2052.00Putative phosphodiesterase 1 (Fragment) n=1 Tax=My... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:169175..169508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size334
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.4422543-CDS-H-akashiwo_Contig100:169174..1695071681387046.4422543-CDS-H-akashiwo_Contig100:169174..169507Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 169175..169507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.4.1prot_H-akashiwo_Contig100.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 169175..169507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.4.1

>prot_H-akashiwo_Contig100.4.1 ID=prot_H-akashiwo_Contig100.4.1|Name=mRNA_H-akashiwo_Contig100.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=111bp
RVVGVHQCCPPVLLAALAEGHQAGPHHKVHKVALALGEVAPRVAVAQRRD
GHAPPAFGVALPPELLRDQPRPARVQRPGLGGVPHVGALQGHLGQQQPPA
GLLEVRAAPRP
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mRNA from alignment at H-akashiwo_Contig100:169175..169508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.4.1 ID=mRNA_H-akashiwo_Contig100.4.1|Name=mRNA_H-akashiwo_Contig100.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=334bp|location=Sequence derived from alignment at H-akashiwo_Contig100:169175..169508+ (Heterosigma akashiwo CCMP452)
CGCGTAGTTGGCGTCCACCAGTGCTGTCCACCGGTCCTCCTTGCAGCACT TGCTGAAGGGCACCAGGCAGGGCCGCACCACAAAGTCCACAAAGTCGCAC TGGCTCTTGGCGAAGTTGCCCCCCGCGTGGCGGTCGCACAGCGGCGAGAT GGGCACGCCCCGCCGGCGTTCGGCGTCGCCCTGCCGCCAGAACTCCTCCG CGATCAGCCGCGACCAGCGCGCGTGCAGCGCCCAGGGCTTGGCGGGGTGC CCCACGTCGGCGCACTTCAGGGCCATCTGGGTCAGCAGCAGCCGCCGGCC GGGCTCCTCGAAGTCCGGGCCGCCCCCCGGCCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:169175..169508+

>mRNA_H-akashiwo_Contig100.4.1 ID=mRNA_H-akashiwo_Contig100.4.1|Name=mRNA_H-akashiwo_Contig100.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=333bp|location=Sequence derived from alignment at H-akashiwo_Contig100:169175..169508+ (Heterosigma akashiwo CCMP452)
CGCGTAGTTGGCGTCCACCAGTGCTGTCCACCGGTCCTCCTTGCAGCACT
TGCTGAAGGGCACCAGGCAGGGCCGCACCACAAAGTCCACAAAGTCGCAC
TGGCTCTTGGCGAAGTTGCCCCCCGCGTGGCGGTCGCACAGCGGCGAGAT
GGGCACGCCCCGCCGGCGTTCGGCGTCGCCCTGCCGCCAGAACTCCTCCG
CGATCAGCCGCGACCAGCGCGCGTGCAGCGCCCAGGGCTTGGCGGGGTGC
CCCACGTCGGCGCACTTCAGGGCCATCTGGGTCAGCAGCAGCCGCCGGCC
GGGCTCCTCGAAGTCCGGGCCGCCCCCCGGCCC
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