mRNA_H-akashiwo_Contig100.39.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.39.1
Unique NamemRNA_H-akashiwo_Contig100.39.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:1637661..1638255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size221
Hectar predicted targeting categorysignal peptide
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.391008-UTR-H-akashiwo_Contig100:1637660..16377071681387046.391008-UTR-H-akashiwo_Contig100:1637660..1637707Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig100 1637661..1637707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.4015746-CDS-H-akashiwo_Contig100:1637707..16378521681387046.4015746-CDS-H-akashiwo_Contig100:1637707..1637852Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1637708..1637852 +
1681387046.4117582-CDS-H-akashiwo_Contig100:1638226..16382551681387046.4117582-CDS-H-akashiwo_Contig100:1638226..1638255Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1638227..1638255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.39.1prot_H-akashiwo_Contig100.39.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 1637708..1638255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.39.1

>prot_H-akashiwo_Contig100.39.1 ID=prot_H-akashiwo_Contig100.39.1|Name=mRNA_H-akashiwo_Contig100.39.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
MKLKIEIVRVLIVLVFGIGITHGFSSPKLAASRTRTPAVRMNLDSSPLAG
GPALGRAG
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mRNA from alignment at H-akashiwo_Contig100:1637661..1638255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.39.1 ID=mRNA_H-akashiwo_Contig100.39.1|Name=mRNA_H-akashiwo_Contig100.39.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=595bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1637661..1638255+ (Heterosigma akashiwo CCMP452)
CAGCCACCAGCCACCAGCCCCAGCTCAATCGGCAACAAGTGTGAAGAATG
AAGCTAAAAATTGAAATTGTAAGAGTTTTGATCGTTCTAGTATTTGGTAT
TGGAATTACTCACGGTTTCTCGTCCCCAAAGCTAGCAGCTTCACGCACAC
GTACCCCTGCGGTTCGTATGAATCTTGATAGTTCACCGCTAGGTATGTAC
ATACTGCCCCTCGTGTGTGGGGATAGAAATGGATTTTGTGTCAAACTTAT
CCCGCTGAAATTTTTGCCAATCTTTTTCCCAGGGATCCAACTTTTGTTTT
TTTCTTCTTGTGTACCAAAACCTGTTAACCTGCATCACCTTTAGTATAGC
AGAATGAACCACCCCCCATGAAATCAAGCCCCTCTGTAAACGAGACTGAC
ACTTCTCTCTGCCTCTGCCCACAAGACCGCTGCGCTCATCTGAAGCACCC
TTGCGCGCTTCGCTCTACTCCCACCCACAATGACCCTGTTGTCGGCGCCC
CTACGCCCCCGCCTTCTCCCCCGACAACCCGGCCGCCGCCGCCGCCGCCG
CCCTTCCTTCCAGCAGCGGGGGGCCCCGCGCTCGGGCGCGCCGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:1637661..1638255+

>mRNA_H-akashiwo_Contig100.39.1 ID=mRNA_H-akashiwo_Contig100.39.1|Name=mRNA_H-akashiwo_Contig100.39.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1637661..1638255+ (Heterosigma akashiwo CCMP452)
ATGAAGCTAAAAATTGAAATTGTAAGAGTTTTGATCGTTCTAGTATTTGG
TATTGGAATTACTCACGGTTTCTCGTCCCCAAAGCTAGCAGCTTCACGCA
CACGTACCCCTGCGGTTCGTATGAATCTTGATAGTTCACCGCTAGCGGGG
GGCCCCGCGCTCGGGCGCGCCGGC
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