mRNA_H-akashiwo_Contig100.38.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.38.1
Unique NamemRNA_H-akashiwo_Contig100.38.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:1632045..1632377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size236
Hectar predicted targeting categorysignal peptide
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.3474376-CDS-H-akashiwo_Contig100:1632044..16320641681387046.3474376-CDS-H-akashiwo_Contig100:1632044..1632064Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1632045..1632064 -
1681387046.3561296-CDS-H-akashiwo_Contig100:1632163..16323771681387046.3561296-CDS-H-akashiwo_Contig100:1632163..1632377Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1632164..1632377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.38.1prot_H-akashiwo_Contig100.38.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 1632045..1632377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.38.1

>prot_H-akashiwo_Contig100.38.1 ID=prot_H-akashiwo_Contig100.38.1|Name=mRNA_H-akashiwo_Contig100.38.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=78bp
MGVMLKHVPRRRAVTAASIAALQLTQAFHTPTNSLWSSNGLSHKLQTFNH
GLECRRDKNLCRSIKNGKEYKGPNMVAG
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mRNA from alignment at H-akashiwo_Contig100:1632045..1632377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.38.1 ID=mRNA_H-akashiwo_Contig100.38.1|Name=mRNA_H-akashiwo_Contig100.38.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=333bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1632045..1632377- (Heterosigma akashiwo CCMP452)
ATGGGTGTGATGCTAAAGCATGTGCCCAGAAGAAGGGCTGTAACAGCCGC
TTCCATCGCAGCATTACAACTTACCCAAGCTTTTCACACTCCAACAAATT
CTCTCTGGTCGTCGAATGGACTTAGTCACAAATTGCAGACATTTAATCAT
GGCTTGGAATGCAGAAGAGATAAAAACTTGTGTAGGAGTATCAAGAATGG
GAAAGAGTATAAAGGTGGCTTGAATTCCATCCCCTCTGCCACTGCCAGCA
TCCAGTAGTCATTAATTTCCTTCCTCCTGACAAGCAACACTTCCCTCCTT
GCGCACTTGACAGGCCCAAATATGGTGGCAGGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:1632045..1632377-

>mRNA_H-akashiwo_Contig100.38.1 ID=mRNA_H-akashiwo_Contig100.38.1|Name=mRNA_H-akashiwo_Contig100.38.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=234bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1632045..1632377- (Heterosigma akashiwo CCMP452)
ATGGGTGTGATGCTAAAGCATGTGCCCAGAAGAAGGGCTGTAACAGCCGC
TTCCATCGCAGCATTACAACTTACCCAAGCTTTTCACACTCCAACAAATT
CTCTCTGGTCGTCGAATGGACTTAGTCACAAATTGCAGACATTTAATCAT
GGCTTGGAATGCAGAAGAGATAAAAACTTGTGTAGGAGTATCAAGAATGG
GAAAGAGTATAAAGGCCCAAATATGGTGGCAGGT
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