mRNA_H-akashiwo_Contig100.37.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.37.1
Unique NamemRNA_H-akashiwo_Contig100.37.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig100.37.1 vs. uniprot
Match: A0A7S3XU83_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU83_HETAK)

HSP 1 Score: 140 bits (354), Expect = 5.350e-38
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 2 
Query:    2 GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLLA 202
            GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLLA
Sbjct:  121 GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLLA 187
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BLAST of mRNA_H-akashiwo_Contig100.37.1 vs. uniprot
Match: A0A7S3RUP3_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RUP3_EMIHU)

HSP 1 Score: 99.8 bits (247), Expect = 6.170e-24
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 2 
Query:    2 GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLL 199
            GPTGLTL FT AL++F   RG+PFLPM++WVGLWT GFL+L + T A+N I+YCT+FT+DVFN+ L
Sbjct:  180 GPTGLTLAFTTALYAFVTPRGIPFLPMYTWVGLWTCGFLSLAACTNAANLIRYCTRFTEDVFNAFL 245
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BLAST of mRNA_H-akashiwo_Contig100.37.1 vs. uniprot
Match: A0A7S1TE13_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TE13_9RHOD)

HSP 1 Score: 99.8 bits (247), Expect = 2.780e-23
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLLA 202
            GPTGLTL FT AL+SFC   GLPFLPM+SWVGLWT   L  L    AS+ I+YCT+FTDDVFNSL+A
Sbjct:  158 GPTGLTLAFTTALYSFCGRYGLPFLPMYSWVGLWTGAILFFLVIFNASDMIRYCTRFTDDVFNSLIA 224
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BLAST of mRNA_H-akashiwo_Contig100.37.1 vs. uniprot
Match: R1CH58_EMIHU (Tentative Ca2+ interacting HCO3-transporter n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CH58_EMIHU)

HSP 1 Score: 99.8 bits (247), Expect = 6.220e-23
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 2 
Query:    2 GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLL 199
            GPTGLTL FT AL++F   RG+PFLPM++WVGLWT GFL+L + T A+N I+YCT+FT+DVFN+ L
Sbjct:  168 GPTGLTLAFTTALYAFVTPRGIPFLPMYTWVGLWTCGFLSLAACTNAANLIRYCTRFTEDVFNAFL 233
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BLAST of mRNA_H-akashiwo_Contig100.37.1 vs. uniprot
Match: A0A7S1TD95_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD95_9RHOD)

HSP 1 Score: 99.8 bits (247), Expect = 6.550e-23
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLLA 202
            GPTGLTL FT AL+SFC   GLPFLPM+SWVGLWT   L  L    AS+ I+YCT+FTDDVFNSL+A
Sbjct:  158 GPTGLTLAFTTALYSFCGRYGLPFLPMYSWVGLWTGAILFFLVIFNASDMIRYCTRFTDDVFNSLIA 224
[Close]
BLAST of mRNA_H-akashiwo_Contig100.37.1 vs. uniprot
Match: R1CFN9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CFN9_EMIHU)

HSP 1 Score: 99.8 bits (247), Expect = 6.790e-23
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 2 
Query:    2 GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLL 199
            GPTGLTL FT AL++F   RG+PFLPM++WVGLWT GFL+L + T A+N I+YCT+FT+DVFN+ L
Sbjct:   37 GPTGLTLAFTTALYAFVTPRGIPFLPMYTWVGLWTCGFLSLAACTNAANLIRYCTRFTEDVFNAFL 102
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BLAST of mRNA_H-akashiwo_Contig100.37.1 vs. uniprot
Match: A0A0G4H159_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H159_VITBC)

HSP 1 Score: 98.6 bits (244), Expect = 1.760e-22
Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 2 
Query:    2 GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLLA 202
            GPTGLTL FT AL++FC    LPF+P++SW GLWTS +L LL+  GA   IKYCTQFTDDVFN+LLA
Sbjct:  258 GPTGLTLAFTTALYAFCRQWSLPFMPLYSWTGLWTSLWLMLLAVAGAPELIKYCTQFTDDVFNALLA 324
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BLAST of mRNA_H-akashiwo_Contig100.37.1 vs. uniprot
Match: A0A7R9UCL0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL0_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.980e-22
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLLA 202
            GPTGLTL F  ALH FC    LPF+ M+SWVG+WTS FL LL+A GA   I++CTQFTDDVFNSLLA
Sbjct:   62 GPTGLTLAFMVALHQFCGAFALPFIGMYSWVGVWTSAFLFLLAAGGAPALIRHCTQFTDDVFNSLLA 128
[Close]
BLAST of mRNA_H-akashiwo_Contig100.37.1 vs. uniprot
Match: D7G110_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G110_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 4.430e-22
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 2 
Query:    2 GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLLA 202
            GPTGLTL F  +L+SF ++ GLPFLP+++WVGLWTS FLA L+  GASN I++ TQFTDDVFN+LL+
Sbjct:  302 GPTGLTLAFMTSLYSFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLS 368
[Close]
BLAST of mRNA_H-akashiwo_Contig100.37.1 vs. uniprot
Match: A0A6U4I2T6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I2T6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.090e-22
Identity = 46/67 (68.66%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:    2 GPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLLA 202
            GPTGLTL F  ALH FC    LPF+ M+SWVG+WTS  L LL+A GA   IK+CTQFTDDVFNSLLA
Sbjct:  226 GPTGLTLAFMVALHQFCQTFALPFMAMYSWVGVWTSALLFLLAAGGAPALIKHCTQFTDDVFNSLLA 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XU83_HETAK5.350e-38100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3RUP3_EMIHU6.170e-2465.15Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S1TE13_9RHOD2.780e-2368.66Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
R1CH58_EMIHU6.220e-2365.15Tentative Ca2+ interacting HCO3-transporter n=1 Ta... [more]
A0A7S1TD95_9RHOD6.550e-2368.66Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
R1CFN9_EMIHU6.790e-2365.15Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A0G4H159_VITBC1.760e-2267.16Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7R9UCL0_9STRA1.980e-2268.66Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
D7G110_ECTSI4.430e-2265.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U4I2T6_9STRA6.090e-2268.66Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:1627005..1629145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons3
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.3054216-CDS-H-akashiwo_Contig100:1627004..16270641681387046.3054216-CDS-H-akashiwo_Contig100:1627004..1627064Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1627005..1627064 -
1681387046.313994-CDS-H-akashiwo_Contig100:1627514..16276131681387046.313994-CDS-H-akashiwo_Contig100:1627514..1627613Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1627515..1627613 -
1681387046.3224115-CDS-H-akashiwo_Contig100:1629100..16291451681387046.3224115-CDS-H-akashiwo_Contig100:1629100..1629145Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1629101..1629145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.37.1prot_H-akashiwo_Contig100.37.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 1627005..1629145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.37.1

>prot_H-akashiwo_Contig100.37.1 ID=prot_H-akashiwo_Contig100.37.1|Name=mRNA_H-akashiwo_Contig100.37.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=68bp
RSDWPHPGLHRRAPQLLRAAGAAVPAHVLLGRPVDLGLPGAPLRHGRQQR
HQVLHAVHRRRVQLPAGR
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mRNA from alignment at H-akashiwo_Contig100:1627005..1629145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.37.1 ID=mRNA_H-akashiwo_Contig100.37.1|Name=mRNA_H-akashiwo_Contig100.37.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2141bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1627005..1629145- (Heterosigma akashiwo CCMP452)
CGGTCCGACTGGCCTCACCCTGGTCTTCACCGCCGCGCTCCACAGGTGAC
CCCCCAATCATATACTGTGGGTTTCTACTATAGAAGAAAAATACAAATAA
TAAAATAAATGATCCCTAATCAGGGGCGTCCTTTGACGCCAGTGAATGTG
TATGTTGGGGGTCTGAGGGTGGAACCCCCAGCAGGGGGGGTCTGAGGGGA
GGATCCCTCTCAGCGGGGGGTTAGGGGGGCGGAGGCCCCCGAATTTGTTT
GAGTTTTTAGGAGTCATATGGAGGCCAATTGTACTGAAAAAATGCTGGCA
TGATGGTCAGCAACGTGGCTCAATTCATGTAGTTGTAGTTACTGAGTTCT
TTCACAAAGCAAGTGTTTGTTGGCTGCCTGGTACTGAACAGAACTGCACA
CAGGGGGCTAAAGAAATCTAGTATTTCCATGATGACCTACCTCAAGTTGA
ATGAATACCTCAGAAATTTGTATTTTCCAAGGTACTAGAAGGAGGAGCGA
GATTATTCATTCTCATAGAAACTGAAAGTTTCTGGTAACAGAAGGTACAG
GCCGTGCCATTTTTGGAGCCAAACGATTTTACTGCATCAGGAAGAACCTG
ATCTTGTCAGGGGGGGGGGGGACAATATCATACTGGATGCCAGCTGGTAA
CTGTTTGAAGAGATCAGAATCTTTAAACGCTTGAGATCATGCCATTGCAC
AAAAAAGTACAAACCCGACTATAGAGCCACTGCAGATTGATTTTGCGTGC
ATGTATATATTGACTTTCGACTCATTCCAATTGTTGCTGCTGCTGCTGCT
GCGAGGTAGAATATTTTTAATTTGGAGAGGAGGAGGAAACACGCCCGTTC
TCCTCTGTTCCATCTCCTTCAATTTTATTTTTTTCGTTCATTTTTAGAGA
AGAAGCAGAGAACGGCACCACACAAAAACATACCCTTCTACACAAGAGAG
AGAAAATTGCTAAGACACAATACAGAGAAGAGAAATATGAAGGTATGAAG
AGCGGCATAATTTAATGCTCATCATTACACATATATTTATAGAAAAGAAA
AAAAAAAAAAACAATTAATTTTAAATTTCAGAAATATAATAGACATCATT
ATATTATATATTTGAAATAGGCCCAAAAGTGTGTGTTTATTCTATACTGG
TTCTTGTCTGCTCGCCTCTCAAAAAATGTATGCCATAATTTTTGGAAAAA
ATTGGGTTAAGGGCTAAGGATCAAACCCTGGGACTAGCCGAGCAAGAAAA
ACCGGGTAGGGGGGATCGAACCCTCTATCTCAGGCGACAAAGTGATACCT
CCTAGCCATCTGACCTATACAGTCTTCCGCCACCGGGATTTTTTTTCCTT
TTTCTTTTACGTATGAAAGGACGCCCCTGCTACTACTAGTAAATAATAAT
AATAAATAATATAAATAAATATAATAAATATTGCTGTATAATATTATATA
CATACATTCTAGTGACTAAAAAAACAAAACCACAGCTATACATACAATAT
AGCTGTGGGCCGCCGCCGCCGCCGCCGCCCAGCTTCTGCGCGCTGCGGGG
GCTGCCGTTCCTGCCCATGTTCTCCTGGGTCGGCCTGTGGACCTCGGGCT
TCCTGGCGCTCCTCTCCGCCACGGGCGCCAGGTGGCCGGCCGGCGCTGTG
TTTACAGCAGCGTTCGGGTTCTTTTCCTCCGTGAGGAGGGGGCTCCCAGT
AAAAAGCAGGCGCCAACAGCACGATGTGCTGGAGAAGAAAAATGGTAGTT
TGAAACAATGTCTAGTTTCGGACCTTCCAGGCACCTGCACTCACTATAGT
ATCCATCTGAGCACCATCTTCTCTCTCAGAATCACATCTCGGCCCGCCCG
CACATCTTTGCTCCTAAATCGCCGTTGCCCCCCTGCCTGCTGTCAACCTC
CCCATCCGCCGGCCCGGATAGGACCGAGCCGGCGGTGCCCACCATCCATT
CATCGGTGCACCCGTCGCAGAGAAGTTTAAAGAATGGCAGGTGAACTTAC
TCGAGGCCACGGCGACGGCGCCCTGCTCGTCCGGTGCCACCGCCGCACTT
GTTCCTCCCCCCGCCGCCGCCGCCGCCGCAGCAACGGCATCAAGTACTGC
ACGCAGTTCACCGACGACGTGTTCAACTCCCTGCTGGCCGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:1627005..1629145-

>mRNA_H-akashiwo_Contig100.37.1 ID=mRNA_H-akashiwo_Contig100.37.1|Name=mRNA_H-akashiwo_Contig100.37.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=204bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1627005..1629145- (Heterosigma akashiwo CCMP452)
CGGTCCGACTGGCCTCACCCTGGTCTTCACCGCCGCGCTCCACAGCTTCT
GCGCGCTGCGGGGGCTGCCGTTCCTGCCCATGTTCTCCTGGGTCGGCCTG
TGGACCTCGGGCTTCCTGGCGCTCCTCTCCGCCACGGGCGCCAGCAACGG
CATCAAGTACTGCACGCAGTTCACCGACGACGTGTTCAACTCCCTGCTGG
CCGT
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