mRNA_H-akashiwo_Contig100.34.2 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.34.2
Unique NamemRNA_H-akashiwo_Contig100.34.2
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig100.34.2 vs. uniprot
Match: A0A7S4DAL7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAL7_HETAK)

HSP 1 Score: 147 bits (371), Expect = 1.260e-38
Identity = 61/93 (65.59%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 HPSLRREIETVLDFTSTSKFGVYDKCDLHIFTDGSKDDKDNTGCGFAIFKGYDLLNPVLRVIFHLPRHVSVYQAELVAIREAIKVCIDKWAAT 279
            HP+ R  +ET+L+F+ST+KFGVY+KCDLH+FTDGSKDD++NTGCGF +FKG +LL P++++ FHLP+HVSVYQAEL+AIREA+ +CI KW+ +
Sbjct:  566 HPAARAVVETILEFSSTNKFGVYNKCDLHVFTDGSKDDENNTGCGFVVFKGTNLLVPLIKIAFHLPKHVSVYQAELIAIREALSLCISKWSTS 658
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BLAST of mRNA_H-akashiwo_Contig100.34.2 vs. uniprot
Match: A0A7T8JY25_CALRO (RNase H type-1 domain-containing protein n=2 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8JY25_CALRO)

HSP 1 Score: 54.7 bits (130), Expect = 3.450e-6
Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:   13 RREIETVLDFTSTSKFGV----YDKCDLHIFTDGSKDDKDNTGCGFAIFKGYDLLNPVLRVIFHLPRHVSVYQAELVAIREAIKVCIDK 267
            R ++    D+ + ++  V     +  D+ I+TDGSKDDKDNTG G+AI +G D+     +    L +  SV+QAE++AI +++K  +++
Sbjct:  127 RLQLNETSDYITGNRIWVDNSHVENSDIIIYTDGSKDDKDNTGAGWAITRG-DI--SFYQSYISLNKEASVFQAEVIAITQSVKALLEQ 212
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BLAST of mRNA_H-akashiwo_Contig100.34.2 vs. uniprot
Match: UPI001FA3FA66 (Uncharacterized protein n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001FA3FA66)

HSP 1 Score: 49.3 bits (116), Expect = 8.600e-5
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:   85 HIFTDGSKDDKDNTGCGFAIFKGYDLLNPVLRVIFHLPRHVSVYQAELVAIREAIKVCID 264
            HI+TDGSK +    G  F +F  ++   P LR +F L    S+YQAEL+A+ EAI   +D
Sbjct:   88 HIYTDGSKFEN-YVGAAFVVFSVHENRIPFLRKMFRLDNRCSIYQAELLAVVEAINWVVD 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.34.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4DAL7_HETAK1.260e-3865.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7T8JY25_CALRO3.450e-634.83RNase H type-1 domain-containing protein n=2 Tax=C... [more]
UPI001FA3FA668.600e-543.33Uncharacterized protein n=1 Tax=Dermatophagoides f... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:1275166..1276010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size374
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.2504501-CDS-H-akashiwo_Contig100:1275165..12754531681387046.2504501-CDS-H-akashiwo_Contig100:1275165..1275453Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1275166..1275453 +
1681387046.27052-CDS-H-akashiwo_Contig100:1275925..12759551681387046.27052-CDS-H-akashiwo_Contig100:1275925..1275955Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1275926..1275955 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.2795053-UTR-H-akashiwo_Contig100:1275955..12760101681387046.2795053-UTR-H-akashiwo_Contig100:1275955..1276010Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig100 1275956..1276010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.34.2prot_H-akashiwo_Contig100.34.2Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 1275166..1275955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.34.2

>prot_H-akashiwo_Contig100.34.2 ID=prot_H-akashiwo_Contig100.34.2|Name=mRNA_H-akashiwo_Contig100.34.2|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=106bp
HPSLRREIETVLDFTSTSKFGVYDKCDLHIFTDGSKDDKDNTGCGFAIFK
GYDLLNPVLRVIFHLPRHVSVYQAELVAIREAIKVCIDKWAATCRKVKAQ
GLPQV*
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mRNA from alignment at H-akashiwo_Contig100:1275166..1276010+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.34.2 ID=mRNA_H-akashiwo_Contig100.34.2|Name=mRNA_H-akashiwo_Contig100.34.2|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=845bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1275166..1276010+ (Heterosigma akashiwo CCMP452)
CATCCCTCCCTGAGAAGAGAGATTGAAACGGTCCTCGATTTCACCTCAAC
AAGTAAGTTTGGTGTATATGATAAGTGTGATCTTCATATTTTTACCGATG
GTTCAAAGGACGATAAGGATAATACCGGTTGTGGGTTTGCTATCTTCAAG
GGTTATGATCTTCTAAACCCTGTTCTCCGAGTTATCTTTCATCTTCCCAG
GCATGTCTCTGTGTACCAAGCCGAGCTGGTGGCTATTCGAGAGGCAATAA
AGGTTTGTATTGATAAATGGGCGGCAACCTGCAGAAAGGTATGTTTTCAC
ATTGATAACAAGCCTGCCATTATAACCTCTGCTGCGCCTACTAGCAAGAC
ATCCCCCCTTTCTTTCGAGAATTATAAATTGATGATTGAGTCGCCTTTTG
ATGTGCGTCTATGTTATATTGCTGCTCACAAGGGTTTTTATGGGAATGAA
ATGGCTGATCAACTTGCTAAAGATGGTGCTGCTAACACTCCCTCGGGTTC
CAACCATGATGTTAACATTATAAATCTAGTTGATATCGACATCAGTATGG
GGACTGCTAAAGGCATTCTTAGAAAGAAACTAGATCAGCAATTAGCCCAG
AAATGGTCTTCCATCATTTGCAGTGATACCACTATGAAACTTATTCCATC
CTTTCAGCATGTTAGAAATGTTGTAGATTTTCAGTGTCATAAACCTCACC
AGAAACGATTTTTGATATGGTTTCTGACTGGTTGTTGCCCCTTAACCACT
ACCTGTTCAGGTTAAAGCTCAAGGCCTCCCCCAAGTGTGATGGCTGTGGC
TCTGAAGTAGAAGACAGGAATCATTTCCTGAATGTGTGCCCGTTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:1275166..1276010+

>mRNA_H-akashiwo_Contig100.34.2 ID=mRNA_H-akashiwo_Contig100.34.2|Name=mRNA_H-akashiwo_Contig100.34.2|organism=Heterosigma akashiwo CCMP452|type=CDS|length=318bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1275166..1276010+ (Heterosigma akashiwo CCMP452)
CATCCCTCCCTGAGAAGAGAGATTGAAACGGTCCTCGATTTCACCTCAAC
AAGTAAGTTTGGTGTATATGATAAGTGTGATCTTCATATTTTTACCGATG
GTTCAAAGGACGATAAGGATAATACCGGTTGTGGGTTTGCTATCTTCAAG
GGTTATGATCTTCTAAACCCTGTTCTCCGAGTTATCTTTCATCTTCCCAG
GCATGTCTCTGTGTACCAAGCCGAGCTGGTGGCTATTCGAGAGGCAATAA
AGGTTTGTATTGATAAATGGGCGGCAACCTGCAGAAAGGTTAAAGCTCAA
GGCCTCCCCCAAGTGTGA
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