mRNA_H-akashiwo_Contig100.23.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.23.1
Unique NamemRNA_H-akashiwo_Contig100.23.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:1022449..1023701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size288
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.117909-UTR-H-akashiwo_Contig100:1022448..10225291681387046.117909-UTR-H-akashiwo_Contig100:1022448..1022529Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig100 1022449..1022529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387046.1280832-CDS-H-akashiwo_Contig100:1022529..10225971681387046.1280832-CDS-H-akashiwo_Contig100:1022529..1022597Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1022530..1022597 +
1681387046.1375942-CDS-H-akashiwo_Contig100:1023562..10237011681387046.1375942-CDS-H-akashiwo_Contig100:1023562..1023701Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 1023563..1023701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.23.1prot_H-akashiwo_Contig100.23.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 1022530..1023701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.23.1

>prot_H-akashiwo_Contig100.23.1 ID=prot_H-akashiwo_Contig100.23.1|Name=mRNA_H-akashiwo_Contig100.23.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=69bp
MVKIWPRNEVLDAVLPLTLAGSRRELTPALVAQLAGTVRQAHPLRAAYAT
WVAEAWRFLQWAEPQAKL*
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mRNA from alignment at H-akashiwo_Contig100:1022449..1023701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.23.1 ID=mRNA_H-akashiwo_Contig100.23.1|Name=mRNA_H-akashiwo_Contig100.23.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1253bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1022449..1023701+ (Heterosigma akashiwo CCMP452)
GGAAGTGGCAGCACCCAGTCTTTGCAATAACCGGTGCTGAAACTTCAGGT CAGACAGCACCTGACTCCTGGGGCCGGACAAATGGTGAAAATTTGGCCTA GAAATGAAGTCTTGGACGCAGTTTTGCCTCTTACGCTGGCAGGGTCCAGG TGAATGAAATAGTCACAGTGTTCTTCCACGTTTTGTGTTCAAACACTATT GAGCTTCACAAATTTCTAGGCACTCAGAAAAAACACCGATCAGCCTAAAC GAAAGAGCCTCCCCTCAATGAGTCCCTGGAAATGATAGCTGCTTACTGTT TGAATAAACATTTGTTTTATGATGATTGTATTGTCATCATCTTGTCATCT TCATTGCACTGTAGAAAGCGGTAAAAATAGTCAGCAACCCCTCTAGAATC CTTTGGGAATAATTAGTTTTTTCAGAGTGATACTCACTGATATCGAAGCT AAGTAGGGCGGCGTCTGCAACACCAGCACTACCTTCAGATACACTCCTCA AGAGGCAATGCATGTAAAAAACCTATATTTCAGCGTTAAAAAATTAAGCC ACCCAACCAATCGCTTAGAATAATTCTTCTGACCTTTGCTTGCATCCGCT GACCTGTTCCATACACTGAAAGCTGTGTTTGATTTGTGACACCTGGTCTT TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTCCTTTCTTTAGTTCT CTCTCTCTGCATCTTTTTGGTTACTCTTCTTTAAAATGAATTGAATATAG ATCATTCAAATTCATCCTGTCCATTTGATTTCTCGTTCTCGTTCTTGTTG CTTTGTTCTTCCCTCCCGCCCTTCGTCCTGTTCTACCCTCTATATACGTT TGCTCCTTTCGCATCCTGAGCTACAACCCTTGTCTTCCCGCCCACCGCGG CATTGGAACACTCCTTCAGATGCTGTCTACAGGTTGCCCGAACACCCTGG CAGCTGCCCGATCTGTCTTGCTCTATACTACCCCCGGCCCCACCGCCGCC TCCCAGAGGTCTCTCCTGTAGGCAGTCTCGCTGCTTCAGACCCCGATGTC CTCTTTTTCGACTACAATCACCACCATCACGATCGAGCGGTGCGGCGGGC GGGGGGGGGTTCAGGCGCGAGCTGACCCCGGCGCTGGTGGCCCAGCTGGC GGGCACGGTGCGGCAGGCGCACCCGCTGCGCGCGGCCTACGCAACCTGGG TGGCCGAGGCCTGGCGGTTCCTGCAGTGGGCCGAGCCGCAGGCCAAGCTG TGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:1022449..1023701+

>mRNA_H-akashiwo_Contig100.23.1 ID=mRNA_H-akashiwo_Contig100.23.1|Name=mRNA_H-akashiwo_Contig100.23.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=207bp|location=Sequence derived from alignment at H-akashiwo_Contig100:1022449..1023701+ (Heterosigma akashiwo CCMP452)
ATGGTGAAAATTTGGCCTAGAAATGAAGTCTTGGACGCAGTTTTGCCTCT
TACGCTGGCAGGGTCCAGGCGCGAGCTGACCCCGGCGCTGGTGGCCCAGC
TGGCGGGCACGGTGCGGCAGGCGCACCCGCTGCGCGCGGCCTACGCAACC
TGGGTGGCCGAGGCCTGGCGGTTCCTGCAGTGGGCCGAGCCGCAGGCCAA
GCTGTGA
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