mRNA_H-akashiwo_Contig100.19.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.19.1
Unique NamemRNA_H-akashiwo_Contig100.19.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig100.19.1 vs. uniprot
Match: A0A7S3UNQ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNQ8_HETAK)

HSP 1 Score: 219 bits (558), Expect = 9.230e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    4 CAPPEVLVLEYDWGKPLPELLVNGPPWDVALASDVLFDPADWEDLWQSICFLAKDRMGKAYSSSDHSTNPLSGTEETVSCQKSSLDNTTGSHHSNDSPGFLLNR 315
            CAPPEVLVLEYDWGKPLPELLVNGPPWDVALASDVLFDPADWEDLWQSICFLAKDRMGKAYSSSDHSTNPLSGTEETVSCQKSSLDNTTGSHHSNDSPGFLLNR
Sbjct:   36 CAPPEVLVLEYDWGKPLPELLVNGPPWDVALASDVLFDPADWEDLWQSICFLAKDRMGKAYSSSDHSTNPLSGTEETVSCQKSSLDNTTGSHHSNDSPGFLLNR 139
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BLAST of mRNA_H-akashiwo_Contig100.19.1 vs. uniprot
Match: UPI0003F0E555 (methyltransferase-like protein 23 n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F0E555)

HSP 1 Score: 49.7 bits (117), Expect = 9.930e-5
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   13 PEVLVLEYDWGKPLPELLVNGPPWDVALASDVLFDPADWEDLWQSICFL 159
            P+VLV+   WG   P+LL   PP D+ LASDV F+P D+ED+  ++ FL
Sbjct:   72 PQVLVVGITWGHVSPDLLAL-PPQDIILASDVFFEPEDFEDILTTVFFL 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3UNQ8_HETAK9.230e-71100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI0003F0E5559.930e-548.98methyltransferase-like protein 23 n=1 Tax=Elephant... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:723767..728718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28737.XP_006886245.1
Preferred nameMETTL23
PFAMsMethyltransf_16
Model size367
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0031072,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032259,GO:0032501,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons2
Evalue1.63e-05
EggNOG OGsKOG2793@1|root,KOG2793@2759|Eukaryota,39G8V@33154|Opisthokonta,3BJHC@33208|Metazoa,3CWIP@33213|Bilateria,48B5G@7711|Chordata,48ZVU@7742|Vertebrata,3JCNF@40674|Mammalia,34YQR@311790|Afrotheria
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-12_003880.1
DescriptionMethyltransferase-like protein 23
Cds size366
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387045.9736364-CDS-H-akashiwo_Contig100:723766..7241081681387045.9736364-CDS-H-akashiwo_Contig100:723766..724108Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 723767..724108 -
1681387045.9829552-CDS-H-akashiwo_Contig100:728694..7287181681387045.9829552-CDS-H-akashiwo_Contig100:728694..728718Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 728695..728718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.19.1prot_H-akashiwo_Contig100.19.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 723767..728718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.19.1

>prot_H-akashiwo_Contig100.19.1 ID=prot_H-akashiwo_Contig100.19.1|Name=mRNA_H-akashiwo_Contig100.19.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=122bp
ECAPPEVLVLEYDWGKPLPELLVNGPPWDVALASDVLFDPADWEDLWQSI
CFLAKDRMGKAYSSSDHSTNPLSGTEETVSCQKSSLDNTTGSHHSNDSPG
FLLNRQQQMQGASDATAACSEE
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mRNA from alignment at H-akashiwo_Contig100:723767..728718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.19.1 ID=mRNA_H-akashiwo_Contig100.19.1|Name=mRNA_H-akashiwo_Contig100.19.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4952bp|location=Sequence derived from alignment at H-akashiwo_Contig100:723767..728718- (Heterosigma akashiwo CCMP452)
GAGTGTGCGCCGCCGGAGGTTCTGGTGAGAGGGGATGGGGCGCCGCCGGG
TTGGAGGAGGCCGCACTTTACTTTTGGGGTGGGTGAGAAGGTGCCGCGTG
CGGCAAAAAATCACAGTCGCTGTCAGGGCTGTTGCGCTGTAGTGAGTACA
GGTGGCCGCAACTTTTGCTACCTCTACCCAGTATTGTCTGTGTGTGCATC
TATAGTTGTATTCTTAGAGGAATGAGCAGGAAGACCGCTTCACTAGACAC
AACAACACTTTTCAAAAGTATCCACCACTGGTGATCATCCATCTCTGACA
ATATCCTTCTGCTGATGCTGTGTTACATCGCTTTTCCTCTCCATGAGTCA
CCTCCATCCTCGATGTTCCACCACCGCTCCCACTACTAATGCCACTCTCC
AATCTGTCCCAAAGACTTCCAGATCATCCGTTTCCATTCCAGTGTCCCAA
CCAGCCCTCGAACCAATCAGTATTTGTCCTCAGTGTACCCTTGCATCCAC
CAATCTCGACCTGTCTTCTACCATACTCTCCATGCCCTTCTTCTAGAGCA
CTTTCCACTCACCGTTCCCTTCCTATACCCAATATGTACTATATTACAAA
AGTAATATATATAGATTTATTGTATGTGTTATAGGGGTGTATACACAGAT
ATAGGTCCAAGAAGGAGAGCAGGGTGCAAGCGGCTTTTGCTGTGCTGGAC
CTATAGGGGCACAATGTGGGGCAGGGGCTTTTCAAGCCTCCTGACTACTG
CAGCAATTATGTCAGGCGGATGCGATGGCGCGGTGTGAGGGTCTGATCTG
GAGCAAGGAATGGGGAAATCCTGGGATACCGAGGTGGGCGATTGCATCTG
GTGGTGGTGCGGTTTTGGCGAGCATGAAGGACCACAGGCGGATGACTACA
CTAATGGGCAAAGTGGTGCGGGGCGTGGAAGACGGGCACTTTTTTGCGTA
CGTCCCGGGGTATCAGGGCCGTGCAGGCAACAAGATGGGTGGAGGCCCTG
GCGGAGGAAGCGACAGTTAGTGGGAAGAGGGTGGCAATGGCAATCCCAAG
GGCGTACAAGCAGCGGTTGTGCAGGGGCAGGTCGTGGCAGCTATGGTCAC
AGGAGTGGGAGGCCCTGGAGGGTGGGATGGTGGTACAACCACGAAGATGT
ACTTTCAGTTCATGCCAAGGCATACCACGAAGATGTACTTTCAGTTCATG
CCAAGGCATCCTAGGGGGGTATCTAGCAAAGGTGAAACAACAGGACGATG
GTACATGTGGCTACTTTGGGCTGGAGGAAGAAAATGTGTATCGCTACATA
TCTCCTGCGCGTTCAAGGTGGTGTGTGAAGCGCCTGGGAACATATGGTCT
GATTGTGTGGGGATTTTGCGGGGAGACCCAGTGTCTATAGTTTGAGGAGC
ATGTAGGGAAATCAAGGCTCTGGCAAGATTTGTGAAGCTAACGAGGCGTG
TTGATTTCTAAGGAGTTCAAAAGAAGCATGGTTAGATGGAAATGTATTTG
AGTGAATTCATCTTGTACGTATGTGGTTGTTGTGAAGTGGTAGCGGGGTG
ATTGGAAATTGAAGTGGAAGGGTCTGCTTATGTAGAAGCTATTGGGGCTC
AGCCCCGAAAGCTGTTTGAACGGCAAGAATGAAAAATAAGTTGAATGGCA
AGACTGAAAAAAAAAGTCTAAGATTACCATCATCATCAGCATAGATTTAA
TATGATTGAAATGAAAGTGATTACTAAGGCAGATATTTATCTAGTTTTAG
TTATGTACACGGCAACGTGTAACTTTTTCGCACAACCAGACAGAGATCCT
GTGTCATTTCACCATGCCATAAAACATTTGCCCGTTGGTTGATAATGTTG
AGACTTTGCATGTGGAAATAGGTTTGATCGAAACATTACACGAAAATATC
CAAAAGATTGGGTACAAATTTTACTAAGTCCGGCAGCCTAAAGTAGACTG
TTTTGACGTAGGACACTTACACTACTACACTGAACAGTTACGAAGACCCC
CATAAACCAATTGGACACTTTGGAAAATCCCCAAATCGGACAATTGAAGA
GGTAAAAGAAGACAAAAGATATGGTTACATTTGCGGAAACGGTGTATACT
TTAGGCTGCCGGACTTAGTACGCTACGCGGTGTACTTGTCAAACTGACAG
GTAGACTTGGTAAAATTTTCTAAGTCGAACGCAACGGATCTGAAAGTGTT
GACTGCAAATCCGTTCTTTTCGTTTGTTTTCAATCTAGAATGACAAATAC
AATTGAAATTTGTAACGTTGTAACAACTTACCCTTTGGTGAAAACATGCC
GGTACGGCCAATAGTCAAATTCCAATTTTCCATTTGATTCCTCTTTCTCT
TCTCAATCTGCACGAATCTGTCACATGTAACTTACATGTTTTCGTGTAAT
AACTACTTAAGTAGATAAATGCCGATGATACGGAACCAGTAGCAGAGTCA
CCAAGTTGGCCAAACTCCAAGTAGGTCCCATCAAGGTAATAATGAAGGTG
GTCCAGCCAGCACATCAACACCAACAGCCGATGAAACAAAAACACTAACG
GTTACACCCCTTCTCTCTCCTCTTCCCCCTCCTTCCATCCCTGCTTCCAA
CAGCACAAGACATCAGGGGATTCACACCTTCCTCTTCCTTGCCCTCTTCA
CCTGACCCTTGCCACCTGGCTTTTACCCTTCTTGTTCCAGACTGACGGAA
TAGCTTTGCTTATCACCCCAGACACTCAACTTCATCGCCCCGAGGAGCGC
GCAGATTGCGCCCGGGTCTTCCTCGTCCGGATGCGAGATTCGCTGCTTCT
TAATCGGTCTGCCACTTCTTCTGAGTCGTGGCTTTGGCTCCAAGAAACTA
TTCCACCCTTGCCATCACCCAACTTCTTCTTCTTGCCAAACCTCCTCTTC
CATTTCTGGCGAGCCTTCACCCTTCTCTCTCCTTCCTCCAGGATCGGGTC
ATTGAGCGCACCCCAGCATGGATCAACCTGAACTCTTCCTCCAGGATTAT
CAGGCTGCTTCCCTGCTTGGCCTTGTAGGCATTGATGTAAAGGAACTCCT
TGATTTTCCTTCTCTTTCAATGACGATCGGCATCCAAGAACTGAGCTTCA
TCCCACTTGAACAGCTCCATCCCAGTTCCCCTCTTCTCATCCTCTCCTAC
TCCATGGTGGTGTGCTGCATGGACAAAGAAGCCATTGTTGACATTTTCAA
TCCACACGCAATACTGATGTTGCTTTGCCCTATCAGTGAACCGTTGTGCA
GTCTCCCCAATGTAGGACACCCCGCACTCTCCACAATCCATGTTATAGAC
CACATCCTTGCGCCACAGCTTGTCTCTGGGGGGGTTAGGTTGCACAACTC
ACTCTACAATGACACTGGCTTTGTGAATACCATCTCCACCCCATGGGCGC
GGATCAGCTTGGCAAAGCTTTTGGAGAACCCAGGCACAAAAGAAGCAAAA
ATGGCATAGGTGTTTTTTCCTCCTCCTCCTCCACCCCCACCCCAGGCACA
AAAGAGGCAAACACCCTCCCCACTCCACGCACAGGGTGTCCATTTGAGAT
GAACTGGTTCTTGAAAAACCCAGCTCCCATCTCAGATCCTCCTCCCGGTC
GCACAGCCTATGAGCTCGATGGATGAGGCACTTCATCACCCCCAGCTTGG
TCTTCTTGGGATGATTTGACTTCCAATGAAGGTACCAGAAAGTGTGTGCC
TGCTTCCGATACACGCTGGTCCCTCTCCATCTTCAGGTCCAGAAAAGCAA
GCACCCTGTTCTTCTCTCTCTCCATAGTGAATTGGATCCGCTTCTCCTGG
CCATTTACATAGCTCAAGAGCTCCTGTAGCTTCTCCTCCCCATGGTCCCA
AATGATGAGCGCATCGTGCCTCATCCGCACCCATTGGGTGGGCTTGTGCT
TGCACCTGCACCTGTCGCTATAGATGAACTGCCTCAAACCAGTTCGAATA
TATACCCGCAATGGGACCAGCGATGGACTTGCCGATAGGAGTCCCGTCAG
ACTGCGTGGAGATCCACCCATCAATTTCTTAAAGTGAGTTTCAAGGCAAA
TCTCCAACAGATGATATGATAACTATAATACTTTTGTATATATGTTGCTT
TTCTTGAAACTGTACGATGTAGTGTAGTCGCATTCATTCGTTCAGATGGT
ATTGCAAGTTTTGCAATATGGTGTTGATGTTGGTATTTATGTTTTTCTTG
TCTGGTGGTGATGTTAGTCAATGTTTTCTTTTTCTTCTCTACATAGTCCT
TTAATTTTCCTTTCTTCTGTTTTTGTGCAAATCAGCCCTGGCGTTAGTTG
ATTTTTTTCTCGTTGTCAATGGTAGTATCTCTCACTTCCTATCCTTCCTT
AGTGATATATTTGGTAAATACAACGAGAAAAAAATCAACCAATGCCAGGG
ATGATTTGCACAAAAACAGAACAAAGGAAAAATTAAAAGACTAGAGAAGA
GAAAGGAAACATTGACAAACATCACCACCAGAGAAGAAAAACAGAAATAC
TAACAATACCATCTGAACAAATGAATGCAACTGCACTACATCATACAACA
GTTTCCAGAAAAACAACAACATACATTTCTTTCTTCATGCACCCCCATGC
ATCTTTGCAGGTGTTGGAGTATGACTGGGGTAAGCCTCTTCCGGAACTTT
TGGTAAATGGCCCTCCATGGGATGTTGCCCTAGCATCAGATGTGCTGTTC
GACCCTGCCGATTGGGAAGATCTATGGCAGAGTATCTGCTTTCTAGCCAA
GGACCGTATGGGCAAGGCGTATTCTTCATCAGATCACAGCACCAATCCTT
TATCAGGCACAGAAGAGACTGTATCCTGTCAAAAAAGCAGCTTGGACAAT
ACTACGGGCAGTCATCACAGCAACGACAGCCCTGGCTTCCTGCTCAATCG
CCAACAGCAGATGCAGGGCGCTAGCGACGCCACGGCGGCATGCTCGGAGG
AG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:723767..728718-

>mRNA_H-akashiwo_Contig100.19.1 ID=mRNA_H-akashiwo_Contig100.19.1|Name=mRNA_H-akashiwo_Contig100.19.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=366bp|location=Sequence derived from alignment at H-akashiwo_Contig100:723767..728718- (Heterosigma akashiwo CCMP452)
GAGTGTGCGCCGCCGGAGGTTCTGGTGTTGGAGTATGACTGGGGTAAGCC
TCTTCCGGAACTTTTGGTAAATGGCCCTCCATGGGATGTTGCCCTAGCAT
CAGATGTGCTGTTCGACCCTGCCGATTGGGAAGATCTATGGCAGAGTATC
TGCTTTCTAGCCAAGGACCGTATGGGCAAGGCGTATTCTTCATCAGATCA
CAGCACCAATCCTTTATCAGGCACAGAAGAGACTGTATCCTGTCAAAAAA
GCAGCTTGGACAATACTACGGGCAGTCATCACAGCAACGACAGCCCTGGC
TTCCTGCTCAATCGCCAACAGCAGATGCAGGGCGCTAGCGACGCCACGGC
GGCATGCTCGGAGGAG
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