mRNA_H-akashiwo_Contig100.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.16.1
Unique NamemRNA_H-akashiwo_Contig100.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:555470..563096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size289
Hectar predicted targeting categoryother localisation
Exons3
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387045.9210167-CDS-H-akashiwo_Contig100:555469..5555351681387045.9210167-CDS-H-akashiwo_Contig100:555469..555535Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 555470..555535 -
1681387045.9296196-CDS-H-akashiwo_Contig100:562657..5628411681387045.9296196-CDS-H-akashiwo_Contig100:562657..562841Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 562658..562841 -
1681387045.937729-CDS-H-akashiwo_Contig100:563057..5630741681387045.937729-CDS-H-akashiwo_Contig100:563057..563074Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 563058..563074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387045.9457562-UTR-H-akashiwo_Contig100:563074..5630961681387045.9457562-UTR-H-akashiwo_Contig100:563074..563096Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig100 563075..563096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.16.1prot_H-akashiwo_Contig100.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 555470..563074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.16.1

>prot_H-akashiwo_Contig100.16.1 ID=prot_H-akashiwo_Contig100.16.1|Name=mRNA_H-akashiwo_Contig100.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=89bp
MRADFGYDDATCSAFGCPTISWRTVYGPSIWAYTEALEANLTRAQEKLDT
TAKELTQGLLAHAEEFLCNSDNCGFVGGFYEAMYHSLCT
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mRNA from alignment at H-akashiwo_Contig100:555470..563096-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.16.1 ID=mRNA_H-akashiwo_Contig100.16.1|Name=mRNA_H-akashiwo_Contig100.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7627bp|location=Sequence derived from alignment at H-akashiwo_Contig100:555470..563096- (Heterosigma akashiwo CCMP452)
TTTGACACTTAGAAAATGGAATATGCGTGCAGATTTTGGGTGAGTGGGAT
CTATGGTTTGGCCCTAGCTGCTCTCAGCATCCCTGCTGACAACTACTTGT
CATTAAAAAATGGAAGTCATTCTTGTGATTTGATCTCAGTTACCTCTGAA
CAGATTCAGATTAGCGATACCATAAGTGTTAGTCCCCTTTGAACACAAAG
AATAGTATTATCCTCTTTCACCATACTGGTTTTGCACCTTTGTTTCTGCC
CCCAGCTATGATGATGCCACCTGCTCTGCATTTGGGTGCCCTACCATTTC
CTGGCGCACAGTGTATGGACCCTCCATTTGGGCCTACACTGAAGCTCTTG
AAGCCAACCTGACCAGGGCACAAGAAAAGCTGGATACCACAGCAAAGGAG
CTGACACAGGGGCTTTTGGCTCATGCAGAGGAGTTCTTGGTGAGGAAAGG
CAAAAGGGGTAGGAAGCCGTGCAGAGGTCCAAGGAGATATTATTACGTTC
TACTCAGTGTAACTGATCCAAACCTATGTACTATGGTGGAACAGAGGGCC
CATTGCCATTTCGTGTGGAACACCGCAGCTCAAACTGAGCATGCCAAATC
AGAAAAATGATGATATGTAGATTGGACGCACGAAGAGACGGCAGCCAAAG
CCCACAAAAAAACGGACAAAATCCATGCCTCCCTTACCCCCCTATAAAAT
GCGGCTTTACGCCCAAGATAGCGTAAATCGACGTGGTTTCGGGAACCATG
TCGAACCCGCAAAAATAAAAATTTAAGCCGCACCTTTTTCGGGGGGGAAA
AAGCCCGCACACCCGCTCGCTGCCATAGTACCGGTCGGACTCGGTACCCC
CGCCCGGGCAGTTATGTAACCGCTATTATACATATAGGGAAAAACAACAA
ATAACAATAAACAACCAAATAAAACATTATATTCACAAACAATTAATGTA
AAGAGGAGGAAGATGAAGATACCTGCTTACAGACTGGTGTTCTTCCTTCT
TCTTTGTCATCAGTTCTCACACCACCAAAATAATAAAATAAAATGGGCCA
TAAAAGCTGCAGCAGCAGAGTGGCCAATCGAACGACTAAGTGCGACAACT
GCCGAGCCAAACGAATCGGCCAGCGTTATCTTCATTTGTCGAAAAAGGAG
GGCACGGCATGCAGGCTTTTGAATGCTTCAGAAGCTTCTCATGCGAACTT
AGTTTTGGAGGATGGCGCCAAGAGAAAAGCACAGGCTCCTAAATGTTTCG
AGCCAAAGTTCTTTGGCCCCAAATCAAGGCCTGGGGCTTCTGTTGAAATG
AAGGAAGTCTCTTTGACATCGACGGTATTGCCGCCCAGCAGGCCCGAAAA
TTAACAATGCAACTCAATGAGATGATCACTGAACGAAATAGTCCAGCAAG
GAGAAACAAAAGGTAGGCTTGTCAAGTGCAAAGTTTGCAAAGGAAAAAAC
AAGCCCCAAGTCTTAAGAAGGGAAAGCAACTCACAATGGAGTCATTTTTT
ACTCCAGCAGGAGGTGCCAAAGAGGAGGAGGTAGACAACACAATCATTGG
CGAGATTGAAGAACATGTTGGCTACGACAACAATTGTGACAACACAGCGA
TAAGACATGTGGCAGAGATGCTGGATAGCATCACCAAGATTACCAGTGGG
GATGTGGATACAAGCAGTTACAGCTAACAGCTGCAATAATTGATAAGATA
TTTGACACCAATAATGGCATCAAAAAGGAGCTGGCAACTCTTCGTGTGAC
TGGGAGTTCACCTTTGAAACTTTTGGACGGATTAAAATCTACCTATAGTG
GTCGCTATCCCAATGAGTTTCGAGCATCACTGCAAGCTGTCACTGCAGCA
ATAACCTCTTCGAGCATCACTGCAGCAATAACAGTCTTAAGAAGGGAAAG
CAACTCACAATGGAGTCATTTCTTTTACTCCAGCAGTAGGTGCCAAAGAG
GAGAAGGTATAGACAACACAATCATTGGCGAGATTGAAGCACAGGTTGGC
TGCAACAATAATTGTGACACGACAGTGAGAAGACATTTGGTAGAGATTTT
TTTTTGTCTACGTTTTTGTCCCATGCAATGTGCTCCTCTCACTTCCTGAG
CCACAACCAATGTCTTCTTGCACGTGCCCTGGCTTCTGAGTACTTTGACA
GACAGCGTTTCGCTAGTGACAAGCGGGAGCTCCACCTGCGCGAAGTCCTA
CATACTCTGTTGTGCCCTTTGGCCCAGATCCAGTCTTTCGGTTGTCTCAT
CCGTTGGTGCTTCCTCCGACAACCCACTACCATGATCAGTGCGTCTGTTT
CCACCCTGCGAGTCGAGGAAGTTCCCATAGACATGGTCAGTCTCCCTCTA
GTTTCAAAGTACTAGGTACTTCTCGCCATGCCGTTTATGGTTTTCGAGTC
GCGAGGAAACTCGACTCTACGACCAGCCTCCGAGCACTGGCTATTGCTCG
TTTTCAACGCTGTCAGTTACGGATGCAACTGCAACGCCTACACGTTTCAC
GAGGATAGCATCACCAAGATTACCAGCGGGAGTGTATACAAGCAGGTACA
GCTAACAGCTGTAATCATTGATAAGATATTTGACACCAATAATGGCATCA
AAAAGGAGCTGGCAACTCTTCGTGTGATTGGGAGGGAGTTCACTTTTATT
TTTTTTTGACACAATACAGTCCACCTATAGTGGTCGCTATCCCAATGAGG
TTCGAGCATCACTGCAAGCTGTCACTGCAGCAATAACCTCTAAAGCTCCT
CCTGGAATGCTGTCCTTTATCGCTCGCCTGACTGGGGCAAGCCGCTTTCA
GATGGCGCTGGCTTCCAAGAAATGAGACAGCTGGTTGGAGGACAGCAGCA
CATCACTCATTGAATTGAAAGGGCAAGTCAGATCAGATAAGATACTGGAG
GCATGGGTGAAGCACTGCACTGAAGTCTGGGTGCATAATATCAGACCATC
AGAGCTGAAATCTGACTGCATATCCAACCCCAATGATCGCTCAGATGATG
CAGTTTATACCACACTTACTACTTGGAAATGTGAGTCAGTGACATGCATG
ATCTTGTACCAATGAAACTTAATAATAATAATAATATGAAAGAATGACCA
TCCAACCACGAAAACATCTCTACTCCCTCACCCAACACATATGCAGTAAA
CACACACAGTAGTACACAAATATAGTTCTTTCCCTAGTTCAAACACCTAA
TGCACCAGACCCATACCAGCCCCATCCATCATGCCGAAACCATGAAACGC
CTTCCTTAGTCAAGAGCGGCCAGAACAAATTTGGTGATGAGTACCATTGA
ATGAAATAGCTGTCATTGTTTTTGTTTTGTTGCCATCTGCATCTGTCGAT
GGGTGTTGAGATGGGTGTTGAAATAAAAATAAGGTGATGATGAATGGGAA
TGTTTATTTTTATTTCATGAGGTGCTTCCTATAGCACGACACAGAGAAGG
GTGAGAGCAACAATAGCTCTATATGAGATATGTGGTGCAGAACACACATA
CAACAGTAAACAAGGTGGCTTTGCCAGTATGGGTGCAAAGTGTCTGATTC
CTCTCTTGTCATCAGAGAAGAGGAAGTAGACAAACCATGTAGCTGAGAAA
GAAACCGAAGGATCTGAATATGGTTATTACTGGGAGTACAGCAGTGTTAT
GCCTCAGGGGGCTGTGCGAAACTGGAAGAAACTGTGAGGAACTTCGGTTG
TAGAATGCACAGCGCATGTCTTCAGGAGACTTGTCAAGGAGACTTGAAGA
GATGCTTGTCGCGAAAGCACAAAAGAAAGATGTCATGGGAGAAAACGGGT
GACAGTGGAATTCGACACCCAACGCCCCCCCAGACCATGACAGCTCACTA
GGAAGGCTTAAGCAGAGTCCATAAAAATGTTTACTGCCCAACAGGGTCAG
AGTGTCTCAAATGCCAAGTTGAATCAAAGCACAGAGAGAATAAGAGTCAA
GTCTTCATCGTGGAATTAAGCCGCATCAATAGCTTCATCGAGTACCAATC
GCATGTTGAGTCTTCTTGCCCTGGCAGCAGGGGTTAACGACTTCCCCGCC
GTTGTTCCAGTGATGAGTAAACAACGCGGCAAAGAGAGTCAAGAGCTCAT
AGAAAGCGGTTCAGGAATGTGCAAGGCTAAGTTATCCAGGAAGATAGAAT
GAAATCATATCCGAATCACCAATAAAGTGGTGTAGGGTGTGAGGAGTCCG
GGTCCAAGGTTGTAGTGGACTACTATACTCACAAGAAAGTGGAGGATGGG
TTTCGAGCAGGAGCAGGAGTCGTGCAGAAGGTCTGGCCCTGGAGTCGGAG
GTCGAGCTGCAACCGTCAGTGCACCAGCGGCAAGAAAGCAGTAGGCTTGG
GCGCTGATGATGGAACGTGATCACTTTCATTCTGGCCACGAGAAGGGCGT
TGCTTGATCTTGATATGGGCGGGTAGGGCGGCGTCAATTTAAATCAACTT
GGGCTTGAAAACTGCGTGTTGAAACTCCTTTTCCAAAAATCTGCTCAGTG
TCCTGATCGACACCACAAAACAAGACTACGGCCGCCATGGCGGTCCTGTA
GGCACTGTGGTGCCGAGAGGAATCGTGTGGGTCCGTAACCGATGGGTGTT
GAAATAAAAATAAGGTGATGATGAATGGGAATGTTTATTTTTATTTCATG
AGGTGCTTCCTATAGCACGACACAGAGAAGGGTGAGAGCAACAATAGCTC
TATATAAGATATGTGGTGCAGAACACACATACAACAGTAAACAAGGTGGC
TTTGCCAGTATGGGTGCAAAGTGTCTGATTCCTCTCTTGTCATCAGAGAA
GAGGAAGTAGACAAACCATGTAGCTGAGAAAGAAACCGAAGGATCTGAAT
ATGGTTATTACTGGGAGTACAGCAGTGTTATGCCTCAGGGGGCTGTCTTG
AAAACTGGAAGAAACTGTGAGGAACTTCGGTTGTAGAATGCACAGCGCAT
GTCTTCAGGAGACTTGTCAAGGAGACTTGAAGAGATGCTTGTCGCGAAAG
CACAAAAGAAAGATGTCATGGGAGAAAACGGGTGACAGTGGAATTCGACA
CCCAACGTCTGTAATGTGCCATCATCAAAACAAGAATAACATTCTGAACG
CTGAACAATCAAATAATTGGCACATGCATGTTGTCTACATATTATTGTCA
CCACAACAAAAATACTTTTATATGCAGAGCTTTGCTAGTTGTAATAAAAA
TAACTTCCTCTCCTCTTTCTTCTGCTGCTGTTCTTCTTCTTCTTCCTCCT
CCTCCTCCTTCTTCTCTCCTCTTTCTTCTGCTGCTGTTCTTCTTCCTTCT
TCTCCTTCTTCTTTAAGAAGAAGGAGAAAAAAAATTCGGCTCTAAATGTG
AAAAACCAAGATTTGTCCGTCCACCATGGGGAAGGCCGTGGGCTTTAGCT
GCCGTCTCTTCAAATGTGCTTTTTGCCAGTATATAATTAGCACGAACCCT
ATTATAATCACCCCAGGTGAAAAGTTTCGTATCGGGGGTACGAGCGGGCG
ACAAAAAAGGCCGCTTCCTCAAGACCATGAGGTTGTCCGAGCATTACTTC
GTCATTTCGGCTCGGATTCCAGTGAAAAGCACCTCGTTAGAAAGCTCTGT
TCAAGGGGAAGAGGACATTTAGGGTCCGGTGCCGAAATGACGAAGTCTCA
GAATTTTCATTTGAAGGTCTTATGTTTAAAACCTTTGATCGTTGTACATT
CGGAAACAGCCTAAGCGGCTATTGTTCTTACCTAGCTTTTTTTGGCGTTT
GTCCCGCGGGTTCGATCCCCGCTTGGACGCGGCGCCAAGCGCTAACGAGT
ACCGCGCAAAATCGCATTATTGATGCACGTCAAACGAAATTTTTCACCTC
GGGTGAATTAAATATATTCTTTTTCAATTTTATTTGGAGTTTTGTTTGCA
ATCAAGCAAAATAATCAAAGAAAAACACTTTTTATAACTTATTAATTTAA
AAAACAAATATAAAACACATAACGAGCTTTTCATTTACACCCAGACCATA
CGGGTCAAAAAATTTGGGGGTCCGGGGTGGAACCCCCTCAAGGGGTTTGG
GGACAGCGTCCCCTGAAAAGATTAGAGGGCGGAGCCCCCCGAACAAATTT
TGGCCTTGGTAGAGGTGAGTTTGCGAATGAAAAGGTGTACTTCCTACTTA
TAGAGCTAACTAGTCCCAACGGTTAGTATTGATGGGAGCAGCGCCTCGAG
ATGAACCACCAGAAACTTGTAACCACCATTGACCATCGATCCTCCATTTT
CTGCTGACTTCTTTTTTATCATGAGTTCATTTGGGGATCACAGTACAACA
CTTTTGAATAGTCTTTCTTCCATTGAAATCCCAAAAATGCACTGCAAAAC
AACTTTTTGACAACTGATGACATTGGATGATCCCCAAATGTCAATTTGTG
TACCCCAATACGAACAAAGCCGCTGTTTTTGAACTGATTCCGAAGTAGAA
ACAGCGCTTCTCCCGCAGACATTCAAACCCAAAATTTGGGGTGCGCCCAA
ATAAATCTTAAACGGTACGGACTGAATTTGGGGTGCACCCAAGATTATAC
ATCTTCGGGGAAAAACAATATTCGATTCTAAAACATTTGGGGATCACATG
AACATGTGATCCCCTCGATGGGCGGGTCTGACACCAAACCTTCTTTTAAA
AAACACGCAAAGCACCATTTTGCTCAACTGCTAACCTTAGAGGAGCCTCT
GCTCAAATTAGCAGAACAGAATGCTAATTTTAGCAGTGTCTTGATAGAAA
ATATTGACACATTACATTTTTATTCCTGGGAGGTGGGGGGATGGTATTGG
GACCTAAAGAGGTGAAATGGGGACCTGTTAGACTCCCCGCCAAAGCCCAG
GAACAGCTCCAACCCAAATACATGTATATTACAACTTTGTTTGGCGGGCA
TTTGGACATCACCATTGGATTCAGCATCAAATCTTGCTCTACTGGGCAAA
TTTGAGGGCAATCCGAGTGTCAATATTTTCAAAACAGTTTACTGCACTCT
ATGGTTGGTATCAACCATAGTTGTTGTTGATAAAATAGATCTACTGTCGT
TAGCCATTAGCTGTTTGTCTTCTTCTCATCGTGAACTGATAATTATTTCA
TTTCCACCTGACTTTTTCTTGGTGCTACTGTTGACATTACTTCTCTCCTT
AGCGTTGTTATTGTTGTCATCCTACAATTTTGGCGGGTTTTTGTCGATTT
GTCTTTTTTCTTTCTTTTTATCTTCATAGCCCTTTTCCGTTGAATATTTT
TTTTGGGAGGAGGCAGCCTCCTCCTCTTGTCGTTGTTGTGAGCACGAGTG
AACAGCAGGGTGTGTGGTGATGATGTTGCAAGAAGAGCTTCTTCATTGAT
ATATTTTCCAGCTGAACTATCCATAGCGGCTAGGAATACTGAAGAAGACC
GCACTCTCGATCGAAATATTTACTTCTGATGAAGTTCTGTTGGATTATAA
AAAGTGTCCTTATCAATCTGTCATTGATCATTCTCATTAATCCAATTCTG
GCACCACAAACTCAATATTTATAACAATGCATACTTTTCCTATCATGCTT
CATGTTTACAGTGCAACTCTGATAACTGTGGCTTTGTGGGGGGGTTCTAT
GAGGCCATGTATCACTCACTCTGCACC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:555470..563096-

>mRNA_H-akashiwo_Contig100.16.1 ID=mRNA_H-akashiwo_Contig100.16.1|Name=mRNA_H-akashiwo_Contig100.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=267bp|location=Sequence derived from alignment at H-akashiwo_Contig100:555470..563096- (Heterosigma akashiwo CCMP452)
ATGCGTGCAGATTTTGGCTATGATGATGCCACCTGCTCTGCATTTGGGTG
CCCTACCATTTCCTGGCGCACAGTGTATGGACCCTCCATTTGGGCCTACA
CTGAAGCTCTTGAAGCCAACCTGACCAGGGCACAAGAAAAGCTGGATACC
ACAGCAAAGGAGCTGACACAGGGGCTTTTGGCTCATGCAGAGGAGTTCTT
GTGCAACTCTGATAACTGTGGCTTTGTGGGGGGGTTCTATGAGGCCATGT
ATCACTCACTCTGCACC
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