mRNA_H-akashiwo_Contig10.41.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.41.1
Unique NamemRNA_H-akashiwo_Contig10.41.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:2164674..2171768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1117108.PAALTS15_25564
Preferred namehrpB
PFAMsDEAD,HA2,Helicase_C,HrpB_C
Model size289
Max annot lvl91061|Bacilli
KEGG koko:K03579
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.000129
EggNOG OGsCOG1643@1|root,COG1643@2|Bacteria,1TPET@1239|Firmicutes,4HE8W@91061|Bacilli,26U7B@186822|Paenibacillaceae
EC3.6.4.13
DescriptionATP-dependent helicase
Cds size288
COG categoryL
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387041.29932-CDS-H-akashiwo_Contig10:2164673..21647091681387041.29932-CDS-H-akashiwo_Contig10:2164673..2164709Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2164674..2164709 -
1681387041.3115401-CDS-H-akashiwo_Contig10:2165371..21654201681387041.3115401-CDS-H-akashiwo_Contig10:2165371..2165420Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2165372..2165420 -
1681387041.31982-CDS-H-akashiwo_Contig10:2170952..21710851681387041.31982-CDS-H-akashiwo_Contig10:2170952..2171085Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2170953..2171085 -
1681387041.3287177-CDS-H-akashiwo_Contig10:2171698..21717681681387041.3287177-CDS-H-akashiwo_Contig10:2171698..2171768Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2171699..2171768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.41.1prot_H-akashiwo_Contig10.41.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 2164674..2171768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.41.1

>prot_H-akashiwo_Contig10.41.1 ID=prot_H-akashiwo_Contig10.41.1|Name=mRNA_H-akashiwo_Contig10.41.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=96bp
MPQVIKGVTFGLKREGDILVFLPGMLQLHRARRALERRLTRKELERTEVV
LLHGSLGKEEQDAASAWRHGQAARSPGNPGRREQPDGGGGAHRGGR
back to top

mRNA from alignment at H-akashiwo_Contig10:2164674..2171768-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.41.1 ID=mRNA_H-akashiwo_Contig10.41.1|Name=mRNA_H-akashiwo_Contig10.41.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7095bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2164674..2171768- (Heterosigma akashiwo CCMP452)
ATGCCACAGGTGATCAAGGGTGTGACCTTTGGGCTCAAGCGTGAGGGCGA
CATCCTGGTGTTTCTACCTGGTATGTGTGCAGGAACTCATCATCCTTTCT
CCTCTTGCTCTTCGTTCTTCACTGCAATTCAATGATGGTGTTCTTCTTTT
TGATGTCTACTTGAAGAATAGATGACCATCTCTAGACAGATTTAGAGTTT
TGCCATTCAAGGAACTCTAAAATATTATGGCAATATATATATAATATAAT
AAATATATATTTATACAAGTTTTTTCTTCATGATACTGAAGAATTGTCTG
CAAAAACAATTTATTTCCAGACTTCTGGGTACTCAACATACTTCTTTGAA
TACCACTTGCCCTTATCAACTTGAGGTCGTAGCAGAGGTCAATCATAAAA
ATGTATTATCTTTTTAGTCTCCTCAGCAATGGCAGCAAAGACAACGTATT
GTGTACCACCACTACACTCTCTTCTGCGCATAATAGTTTTTTTTTTTAAT
GCCAACGTCACCCCTTTCGCAAACACAACACTCGGTGACTCTTGTGTTAT
ATTCCTGTTTTGCGGATAACATCTTGTACCATCCCCCACACACACTATCG
CATCGCACCCAAACCCGCTGGCACCCGCGCCGCCCCCGTCGGCGGGCGTG
GGCGGGGGGCGGTGTGGGGGAGGGGGGTCGCAGGCATGCTGCAGCTGCAC
CGCGCGCGGCGCGCGCTCGAGCGCCGGCTGACCAGGAAGGAGCTGGAGCG
GACCGAGGTCGTGCTCCTGCACGGCTCGCTCGGGAAGGAGGAGCAGGACG
CGGCCAGCGCTTGGCGGTGCGATCCGTGGGGGGGGGGGCACTGCACCGGC
TTGGGGGCGTCGCGTCGCGGCGCTTCGCTGCGCGGGCGGCGCGGGGAAGG
TGGCGGACTGGGCCGCGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGGGTTGGTGGGGGAAAACGCGTCGCGGCGGACCTGCTGCCGGTCTCC
TTGAAGGAGCAGCTGAGCTGGACCGTGCGTGCCTTGACGCTGAATGCGCC
GGGACCTCGCTCGGCAACGCATCCGCCCGCTCATGCGTGCGTGGGCAGCA
GTGCCAGCGTTCTTTTCAAAGCTTGCTGGTGGTGCACCTTCGACTTGCAG
CCATATAAACATGTCAGTCACTTACGAAATCAAGTTTCTCAAGTTTCACA
GGTCTGTTGTCAAGCGTTTTCCACAAGATTGCCTCATTGCCAGTGCTCAA
AAGGCACCAGTGTGTTGTGCGTACTTTTCTCAACAATCTGAAGACAACAT
TACAATTTCGACGACGTCCTTGGCGAGGACATGATGTGCTCAATATATTA
CTTATCTGCCAGACGAATCAGTGCGAGACCGGTTCTCCAATAAAAGCATC
TAAACCGAGCTCAGCTTCACGCAAATCTTTTGGGGTCTTGGAAATTTCAA
ATTCACCACTGGCTTCATCCGAGAGTGGTTGCAAGAACAAAAATCATCAT
CAGTTATATATTCCACCTGCTGTAATTTTTTAGCTGGTGATGGCTTGCAG
CAATATTACACTGTGACGACTCAGTAGAAGATCAGTATGTGCAGTGCAAC
ACCAACAAACAGCTGTCAGCACCAGAGTCCCCGCCATCAGGGCTCCCTCT
GCTCATTCCCATCAGTAGCCTGCTAGAAGAAATTGAAGATGTAGCAATCA
GCTAGTGTGACCGGTTACTGTCAGCCGCTGTGCTCCAATATGAGCGAAAG
TCAGCTGCTGGCCTACCAAAAGCATTCTTCATTCATTTACTGTTCAAACA
CCTGTTAAAAACACCAAAAACAATATGACGCCTGTCATTTAACTCTTACC
GTAGGATTTACGATATACAATGGCATTGTATATTTTTTTTTGACATCGTT
GAAAACGGAGTTGGACCATTTCTTTTATTCTAACACGACGTAAGCCAATC
AAAACAACATAACGGGTTGGTCAATATTGATGTCGGTATCAGCAGATTGG
TCAATGGAAGTTCAAAACGCCTTTCATCCAACGTAATTGAAAAAAAATAG
AAAATGTACAACTGCCGCGAGATGGAATCAATCACCCTCTATAATAGCAG
CGTTCGGTTGATGGTACGGAACAACAGCACAGAAGATCAATTCACAAAAG
AATTACAGATGAGAGACCAAGACGTGAAAACATGCACAACGAGAATTGAA
AGAATTGTTCGAAAGAACTATTTCCCGAAGACTAAAGATTTCAAAGTCAA
TATTGTCATGTTTAAAATGCAATGCAATTGTAAAAGATATTTGCAATATC
GTTGCATATTATTACGACCATTTTTCTTGCATACCGACCAAAAAAGTACA
TGCATTGTGTTATTTGACAATACTATTGTATGCTGATATTAAATGTAGGT
TGTAATTTCTGACAATGGCATTGTAAATAGTTACTGCAATGACATTGTAT
TTTATTGATGTTGAATTTTTTCCACGCATGTTTGTTTTTCAAACCTTCCC
GTGTGTGCTCGGTGGTCGCATTTAGGAGGGCAGCCCTTTGGGAATTTTCC
CAACCTCTCTGCGGACTGGTCGGAACCGCAGGCATGCTTGAGGCAGTGGT
TCAAGCACGTGGACTCCTCCTCCATGTGCAGAGCCAGATCATACTTGATA
AATTCCTGGAGGTTTTTCAGGCGTTCTCTCATTGCGTCAACAGGAGCACC
TGCGTTGTTTTTTTCCCGGTAGAAGGGATCCAGCTTGTTCAGGAACGTCC
CTAAGGCCTGGTGATTCAAAATGTGGAAAGAACGTCTTGCATTTGAATGT
TTTAACAATAGCATTGTAACTGCAGTATACATGTGTATTGTACAAAAATA
CATGCATTCTGCAGCTACCATAAGTAAAAAAAAGTCACCTCGAAAGTGTC
ACGGCCGAATTCTTCCGTGATGTTGTCCAGAGCTTGCAGAGTTTGTCGCT
CTTTGGACGTCATCTTCGTTGTGATCTGAGGTGTTTGTTTGAAATTGGGT
TTTATTTGTTAGTTTTTCCACTAATTTTTTAAAATCATTTTTTCAACACC
TCGGCCTATGTGTGTGAAAATATTGCGTTGGGGGTGGAGGGTCTCACGTT
GTGAAAACTCCATAGCTGACTCTCTCTTTTTTTATCAACGCCTATTTTTT
CCATCATAGCGACATAGTTGCGGTACATTTGAATCTTTGATGTTTTCCGC
TCCAATCCTTGCAGTACCTGTTTTTAAATTGTAAAAGAAAAAAAAAAAGG
AAAAAAATATTACAATGCCATTGCGTGTTTCTTGGCAAATCGACAAATAT
TGAATTTAAATATTTACAATGCCATTGTATGTTTCTTGGCAAATCGACAA
ACATTGAATTGAAATATTTACAATGCCATTGTATGTTACATTTACAACAC
TCAAAACTTAGAATTGTAAAGATTTTCTGCTTGCCTGAGTGTTCCCAGCG
CCGCCAACCACGTTGGGTTTATCAGCAAGCATGGAACAATCGTTCCTGAT
GGAGTAGATGCAGTGGTCGACTTGGTCTTGGGTCAGCTTGCACCTTCTTT
TCTTGGTGAATGTGTTTTCTGGACTGCGACCGAAAACATAGTTCGCCGCA
CGCTTCCGTGTTCTTGTCCATGATTTCTGGGAAAAAGTATGGTCAAAGGC
TTCCTTCGATTCTTCGTAAGTGTAGTGCTTGGCAATTGAACCGATTAGAA
CTTCCCTCTCCTTTGACAACTTCTGGCCTTTTTTTTTTTTTTTTTTTTTT
GTCTACGTATAAGCACAAAGTGGAGAAATAGTTCAGCTAGGCTATGATGC
TACCTCTGCTCATGTCATTTGCATTTTTCTTTCTTTCCCTTTTTTTTTTT
TTTTTTTTTTTTTTTCTTTTTCTAAGACTTCTGATGTGGCTGCCTTGTGG
TAGAGAATTGGCATAATCTACTACGTCCTGTAGCACTTCTTGGGCCTTGT
CCTGTTTGGATGTCCCATCAGATAGCCAACTCTTGCCCAGTCCCCTCAAG
GCCCCTTGCCCAAGAAGTTTTTGCCAAGAATCCCCAAACAACTTCTTTGA
AACATTGCTGAGCAAATGGCCAGCATGTTTTATCCACTTGTTCTTAGTTG
TATGGTCATTGGCCTGGTCAAAAGGCAAGTCATTTGCCGAGATGGAAGCG
TCTGCTGGGCAATCCTCCAAGCCAAACACGGACTGGAGACGCCCAAGCAT
TGTCATATTCTTGCGATCTGCAAACTCGCACAGATCATACTTCTTTCGCT
CACAGCCGCCTTTTTTGGCCCTGCAGCCATTGCACCGGTCCTCCACCTTA
CACACAGAAAACTTTACTTCATCATTGGATTTAGTTACCTTGCCCTTACC
CTTCCTTGCTGCCATTGTACTTTCCTACCGCTTGCAAGCCAATGGCAGCA
AGGAAGTAAATGGAAATGTTGTTGGATTGTGGTTTTCTTTTTGTGCTGCT
GCTGCTGGTGGTGGTACTGCTGCTGCTTTGGAATACATCTTCGGTTTTTT
TTTTTATTATTTAAATCCCAAGACAGATTGTCCAACGTCATGGCGCGAGA
CAGAAAAACATCCATGCAAAATGAAGGCCTGATCTTTTTTTAACGAATGC
ATATATTTTTATAGTTAAAAAGAAATCAGACAAAAAACAAGACAAATATT
AATATGTAAAAGTTAAGCTTTAATCTGGCTAATACACAGTTATGAGAAAG
CACATAAGTGGTATTGTCAATTGACCCAATACCATTGTTGGAATATACAA
TGCAAAAATGGTTAACAGGCAATAACTTTGGAATGGGCCCTGGCACCAGG
CCCAAATTTTAATGGTATTTCCCTTTGGGTGTCCTACAACTATTAAAAAA
TTTTGGGCCAGGCGCTAGGGCCCATCCCTGAGCAATTAAAGAATAACCAT
TTTCTGTCACCCCTTGCATTGTATGATGATACAATGAAAAAGCCATTTCA
TTGTAGCATCATACAATGGATGACCAAAAATGACCAAAAATGATCGAAAA
AATCGTATACAATGCCATTGTATATCGTAAATCCTACGGTAAGAGTTAAA
TGACAGGCGTCATATTTGAAAAACAAAAACAAAAGTCAACACAATATCAA
TATAGCTCGTGGTTTTTGAGAGCGCGGAGGCAGAGCAGGAGCTTTTTGAG
CGGTGACAGCGGGAGGTGAGGCGGCAGGGAGAGCAGGTGCGGAGGATGGG
GCAGCAAATGTTGAAGGTTCTCAGGGAGGCTGAGGAAATGTCTGTGAGGA
CACTCCAATTCCTCGGTCCAGGACCGAGGAATTGGAGCGGGAGAATAAGC
ATCGGGATTGAGAAGGAGTGTAAATTGGTTGGGAAGCAGGGGACAGGTGG
TTACAGTTTGTTAGGGTGTGGCTGGGAAGGAGACTAGCATTTTCTTGAGT
TTTGGTGGTGACCAGGAGACAAGAGGTGGGTCTAGAAGTGGAAGGGTCCG
CTTGTGGAGGCCGGGGCTTCGGCCCTTGTAGTTATCCAAGCGGCTGGACC
TTAAAATAAATTAAAATCATCATCATCATTACCATCATAGTAGTACACAC
ACCGATCATCAACAGCATCATGGGCACAGTAACGTAAAATGATTAGTAGT
TGAAGAGTGTATTAAAAATATACAATTCAAAGACAACTCTTCCATCATAC
TTTGGTGTCCATAGCTTACGACCTCAACAACTATTACATTTATAGAAATT
GTTGTTAAATAAATCTTTCCAAGTATACAAACGAAAGCCAAATGAGGCTC
AGATCTTCAACAACGTAATTATGTTAGACAAACCCAAAATACATGATAAA
AAAGTAAGTTTGCATAATATAGGCCATAGCATACAGTGTAGTTTTTTTTC
CAACCTCTTCTCATCACCCAGTAGGTTTTCCCACTCAAAAGACTGATGGA
GGCACCTACAAAAGAATTGACAGTCGTAAAATCATCATCATATATATGTG
CAAAAAATGGTTTCCCTTTTCATCATACGGTAGTATACAATGGTAAGGAT
TCATAACGATAACTGTCCATGTGTATACATGCGGTATCGCTGAGAGAGCA
GTGTTTGCTTTTCAGAAATAAAAAGCCTTTCATTTTTAGTACACATATGC
ACCCTTTATAACTTGGAAAAAAAAAAACACCAGCCAAAAAAACGAATAAA
AAATGTTAAGCTCTTGGCGAAGTGTTTCGTGCACCTGTACGGATCCCACT
TTGCCGCAGCTTCTCCACTTAAAAGTCTCGTGCCGCTATTCTTCACCCTT
GCCCGAAGCGCTCCTCTCACGCATGCGGATCGTCCGCGACCCCTCCCCTG
ACCGTCGCCGGACCCCCTCGCGCCTCTGGACGCCGCCCCACCCCCCAGGC
ACGGGCAAGCGGCGCGTTCTCCTGGCAACCCCGGTCGCAGAGAGCAGGTA
CCCCAGCCGCCAGACCAAGAGGCCCTGCGTACACTCTGGTGGTACTATAC
ATCTGTATTAGTACTACTCGTGTATGTATGGAATTATATATATTAGAGCC
ACCACTTCAGTAATCCTAATTTGCCCCCCATGAAATAGAGAAAGACAGCA
ACAACAGGAGGGCAGCAGCACAGCAGGCAGTAGCACAAGCTGAAGGTTAT
AAATATGCCGCCGATGCCTTCATGCCTTTGTTCACACTGGGCTCTGGGCC
GTCATCCAAAAACGTCCCATTTCCCACGTTTAAACTGGGCCGAGCCGGGC
CGTCGTCCAAAAACGTCCCCTTCCCGACGACCCGACCCCGCCTCGGCCAC
CGACGACGGCAGGCCGCGCCCGTCCCAACGTCCGCTTCCTTTATGCCTTC
GTTTAAACTGGGCCGGGCCGTCATCCAAAAATGTCCCCTTCCCGACGACC
CGACCAGCTCTCGGCCACCGACGATGGCAGGCCGCGTCCGTCCCAACGTC
CGCTTCCTTTATGCCTTCGTTTAAACTGGGCCGGGCCGTCATCCAAAAAC
GTCCCCTTCCCGACGACCCGACCAGCTCTCGGACAACAGCGACGCCAGCC
TGCGCCCGTCCCAACGCCCACCGCTGCCGCCCCCCGGCGGCGGTGCGTAA
CGCGTGCAGCCTGACGGTGGCGGGGGTGCGCACCGTGGTGGACGC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig10:2164674..2171768-

>mRNA_H-akashiwo_Contig10.41.1 ID=mRNA_H-akashiwo_Contig10.41.1|Name=mRNA_H-akashiwo_Contig10.41.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=288bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2164674..2171768- (Heterosigma akashiwo CCMP452)
ATGCCACAGGTGATCAAGGGTGTGACCTTTGGGCTCAAGCGTGAGGGCGA
CATCCTGGTGTTTCTACCTGGCATGCTGCAGCTGCACCGCGCGCGGCGCG
CGCTCGAGCGCCGGCTGACCAGGAAGGAGCTGGAGCGGACCGAGGTCGTG
CTCCTGCACGGCTCGCTCGGGAAGGAGGAGCAGGACGCGGCCAGCGCTTG
GCGGCACGGGCAAGCGGCGCGTTCTCCTGGCAACCCCGGTCGCAGAGAGC
AGCCTGACGGTGGCGGGGGTGCGCACCGTGGTGGACGC
back to top