mRNA_H-akashiwo_Contig10.36.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.36.1
Unique NamemRNA_H-akashiwo_Contig10.36.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig10.36.1 vs. uniprot
Match: A0A7M3SW75_9MICC (Hsp20 family protein n=1 Tax=Rothia koreensis TaxID=592378 RepID=A0A7M3SW75_9MICC)

HSP 1 Score: 61.2 bits (147), Expect = 2.860e-8
Identity = 40/109 (36.70%), Postives = 58/109 (53.21%), Query Frame = 1
Query:   64 QQFEDDPQLRNAQIMGVDIWETNSYFKIKIDVPGVSTEDLQVDIDKNAEIMTVAAKRTVKEHDSSDSPAKKIQSERTAELYR-SFRVPQGADYEKIDACLQNGVLELTI 387
            Q F     L +  +M +D W     F I++D+PGVS E + VD+++N  I+TV A+R     D  D   +   +ER   ++R    + QG D  +I A  QNGVL LTI
Sbjct:   17 QFFGSQGTLAHPTMMPMDAWRDEDQFHIELDLPGVSAESIDVDVEQN--ILTVEARR-----DGPDDSRELTTAERPRGVFRRQLSLGQGLDTSRIQATYQNGVLSLTI 118          
BLAST of mRNA_H-akashiwo_Contig10.36.1 vs. uniprot
Match: A0A8I2FYW8_9BACT (Hsp20 family protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A8I2FYW8_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 4.120e-8
Identity = 37/114 (32.46%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   55 DTLQQFEDDPQLRNAQIMGVDIWETNSYFKIKIDVPGVSTEDLQVDIDKNAEIMTVAAKRTVKEHDSSDSPAKKIQSER-TAELYRSFRVPQGADYEKIDACLQNGVLELTIQK 393
            D+ +Q ED+ ++  +     DI++T   + +KI+VPG++ +D+ +++  N  I++V  +R  ++ +  D   +   +ER + + YR+FR+P+  D +KIDA L++GVLEL + K
Sbjct:   26 DSEKQSEDESRV--SWYPAADIYDTKDNYVLKIEVPGLTKKDVNIEVKDN--ILSVKGERKEEKDEKKDGYHR---TERLSGKFYRAFRLPKNVDAKKIDATLKDGVLELKVAK 132          
BLAST of mRNA_H-akashiwo_Contig10.36.1 vs. uniprot
Match: A0A5J9SXA8_9POAL (Uncharacterized protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9SXA8_9POAL)

HSP 1 Score: 62.0 bits (149), Expect = 4.580e-8
Identity = 36/105 (34.29%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  124 ETNSYFKIKIDVPGVSTEDLQVDIDKNAEIMTVAAKRTVKEHDSSDSPAKKIQSERTA-ELYRSFRVPQGADYEKIDACLQNGVLELTIQKDKNTERGARRTIKV 435
            ET     I +DVPGV  ED++V++++N+ ++ V+ +R     D+     +  ++ER A   +R FR+P GAD +++ A L+NGVL +T+ K    +R   R I +
Sbjct:   77 ETPEAHVIAVDVPGVRREDVKVEVEENSRVLRVSGERRA--DDAEKDGERWHRAERAAGRFWRRFRMPAGADVDRVSARLENGVLTVTVPKVAEHQRREPRVISI 179          
BLAST of mRNA_H-akashiwo_Contig10.36.1 vs. uniprot
Match: A0A2E0Y7E7_9GAMM (Heat-shock protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E0Y7E7_9GAMM)

HSP 1 Score: 60.1 bits (144), Expect = 7.120e-8
Identity = 38/121 (31.40%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   79 DPQLRNAQIMGVDIWETNSYFKIKIDVPGVSTEDLQVDIDKNAEIMTVAAKRTVKEHDSSDSPAKKIQSERTAELYRSFRVPQGADYEKIDACLQNGVLELTIQKDKNTERGARRTIKVRS 441
            +P  R   +  VDI ET + ++I +++P V+ ED  VD+     ++TV+ +R  +     D   +     R  +  RSFR+P+ AD E+IDA +++GVL L + K    ++   R I+V +
Sbjct:   25 EPLARGDWLPPVDISETATEYRIDVEIPSVAAED--VDVSFKDGVLTVSGERRTERSSDEDGGKRHRVERRWGKFTRSFRLPENADAERIDARVKDGVLYLVVGKQ---DKAQPRRIEVNA 140          
BLAST of mRNA_H-akashiwo_Contig10.36.1 vs. uniprot
Match: A0A1N7KY49_9GAMM (Heat shock protein Hsp20 n=5 Tax=Oceanospirillales TaxID=135619 RepID=A0A1N7KY49_9GAMM)

HSP 1 Score: 60.1 bits (144), Expect = 7.120e-8
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 1
Query:  112 VDIWETNSYFKIKIDVPGVSTEDLQVDIDKNAEIMTVAAKRTVKEHDSSDSPAKKIQSERT-AELYRSFRVPQGADYEKIDACLQNGVLELTIQKDKNTERGARRTI 429
            VD+ +    + I  D+PGVS ED+ VDID       V+ K  +K+ DS+    + + SER    + RSF +PQ  D E+  A  ++GVL+LT+ K    E   R TI
Sbjct:   38 VDVTDAGENYLIHADIPGVSKEDIHVDIDG----AQVSIKAEIKQKDSTSDDQRVLHSERYYGSVSRSFELPQDVDIERSAAEYKDGVLQLTLPKKVQQESQRRLTI 140          
BLAST of mRNA_H-akashiwo_Contig10.36.1 vs. uniprot
Match: A0A2H0JTA9_9BACT (Heat-shock protein n=1 Tax=Bacteroidetes bacterium CG12_big_fil_rev_8_21_14_0_65_60_17 TaxID=1973924 RepID=A0A2H0JTA9_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 7.880e-8
Identity = 40/123 (32.52%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   70 FEDDPQLRNAQIMGVDIWETNSYFKIKIDVPGVSTEDLQVDIDKNAEIMTVAAKRTVKEHDSSDSPAKKIQSERTA-ELYRSFRVPQGADYEKIDACLQNGVLELTIQKDKNTERGARRTIKV 435
            F++D     +    +D+ ET   + +++DVPGVS +D+Q+++     ++TV+ +R  +E   +D+    ++ ER A   +RSFR+P+  + +KI+A  +NGVL +T+ K    E    R IKV
Sbjct:   31 FDEDADQNVSWTPHLDVLETEDAYVLEMDVPGVSRDDIQINLQDG--VLTVSGERASREVSENDNV---VRVERHAGRFFRSFRLPKKINEQKIEARHENGVLMVTLPK---VEESKPRKIKV 145          
BLAST of mRNA_H-akashiwo_Contig10.36.1 vs. uniprot
Match: A0A804MUG9_MAIZE (SHSP domain-containing protein n=6 Tax=Andropogoneae TaxID=147429 RepID=A0A804MUG9_MAIZE)

HSP 1 Score: 61.2 bits (147), Expect = 9.120e-8
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  124 ETNSYFKIKIDVPGVSTEDLQVDIDKNAEIMTVAAKRTVKEHDSSDSPAKKIQSERTA-ELYRSFRVPQGADYEKIDACLQNGVLELTIQK 393
            ET     I +DVPGV  ED++V++++N+ ++ V+ +R   E    D   +  ++ER A   +R FR+P GAD +++ A L+NGVL +T+ K
Sbjct:   92 ETPDAHVISVDVPGVRREDVKVEVEENSRVLRVSGERRADEEKEGD---RWHRAERAAGRFWRRFRMPAGADVDRVSARLENGVLTVTVPK 179          
BLAST of mRNA_H-akashiwo_Contig10.36.1 vs. uniprot
Match: A0A523LK55_9GAMM (Hsp20/alpha crystallin family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523LK55_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 1.280e-7
Identity = 42/130 (32.31%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   49 FFDTLQQFEDDPQLRNAQIMGVDIWETNSYFKIKIDVPGVSTEDLQVDIDKNAEIMTVAAKRTVKEHDSSDSPAKKIQSERT-AELYRSFRVPQGADYEKIDACLQNGVLELTIQKDKNTERGARRTIKV 435
            FF  + ++  D   R+     VDI ET   ++I +++P VS +D+ V I     ++T++ +R    HD  +   K  + ER      R+F++P+ AD E I+A  ++GVL + I K    E+   RTIKV
Sbjct:   15 FFARVTRYPSDSHTRSVWSPPVDISETEVDYRINLEIPAVSADDVNVTIKDG--VLTISGER----HDEQEDSHKNHRLERRYGRFTRTFKLPENADEESINASSKDGVLYVVIAK---REKETPRTIKV 135          
BLAST of mRNA_H-akashiwo_Contig10.36.1 vs. uniprot
Match: A0A1E5V891_9POAL (21.9 kDa heat shock protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5V891_9POAL)

HSP 1 Score: 60.5 bits (145), Expect = 1.540e-7
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  124 ETNSYFKIKIDVPGVSTEDLQVDIDKNAEIMTVAAKRTVKEHDSSDSPAKKIQSERTA-ELYRSFRVPQGADYEKIDACLQNGVLELTIQK 393
            ET     I +DVPGV  ED++V++++N+ ++ V+ +R   E    +   +  ++ER A   +R FR+P GAD E++ A L+NGVL +T+ K
Sbjct:   88 ETPDAHVISVDVPGVRREDVKVEVEENSRVLRVSGERRADEEKDGE---RWHRAERAAGRFWRRFRMPAGADVERVTARLENGVLTVTVPK 175          
BLAST of mRNA_H-akashiwo_Contig10.36.1 vs. uniprot
Match: A0A0S8F2F1_9DELT (SHSP domain-containing protein n=1 Tax=Myxococcales bacterium SG8_38_1 TaxID=1703408 RepID=A0A0S8F2F1_9DELT)

HSP 1 Score: 58.9 bits (141), Expect = 1.810e-7
Identity = 35/101 (34.65%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   91 RNAQIMGVDIWETNSYFKIKIDVPGVSTEDLQVDIDKNAEIMTVAAKRTVKEHDSSDSPAKKIQSERTAELYRSFRVPQGADYEKIDACLQNGVLELTIQK 393
            + A  + VDI E +  F +  +VPG+S ED++VD++KN  ++T++ +R + E + S+   ++++ +      RSF +P+  D E I A L++GVLEL + K
Sbjct:   27 KQALRVAVDIREEDDAFYVDAEVPGLSAEDVKVDVEKN--VLTLSGERKI-EKEESEGTFRRVERQ-YGSFTRSFSLPETVDTESISADLKDGVLELRLPK 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M3SW75_9MICC2.860e-836.70Hsp20 family protein n=1 Tax=Rothia koreensis TaxI... [more]
A0A8I2FYW8_9BACT4.120e-832.46Hsp20 family protein n=1 Tax=Candidatus Aminicenan... [more]
A0A5J9SXA8_9POAL4.580e-834.29Uncharacterized protein (Fragment) n=1 Tax=Eragros... [more]
A0A2E0Y7E7_9GAMM7.120e-831.40Heat-shock protein n=1 Tax=Gammaproteobacteria bac... [more]
A0A1N7KY49_9GAMM7.120e-837.38Heat shock protein Hsp20 n=5 Tax=Oceanospirillales... [more]
A0A2H0JTA9_9BACT7.880e-832.52Heat-shock protein n=1 Tax=Bacteroidetes bacterium... [more]
A0A804MUG9_MAIZE9.120e-837.36SHSP domain-containing protein n=6 Tax=Andropogone... [more]
A0A523LK55_9GAMM1.280e-732.31Hsp20/alpha crystallin family protein n=1 Tax=Gamm... [more]
A0A1E5V891_9POAL1.540e-737.3621.9 kDa heat shock protein n=1 Tax=Dichanthelium ... [more]
A0A0S8F2F1_9DELT1.810e-734.65SHSP domain-containing protein n=1 Tax=Myxococcale... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:1987285..1988358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1349767.GJA_2464
PFAMsHSP20
Model size724
Max annot lvl28216|Betaproteobacteria
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.71e-10
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,1N1RF@1224|Proteobacteria,2VT18@28216|Betaproteobacteria,474TC@75682|Oxalobacteraceae
DescriptionBelongs to the small heat shock protein (HSP20) family
Cds size435
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.1643963-UTR-H-akashiwo_Contig10:1987284..19872991681387043.1643963-UTR-H-akashiwo_Contig10:1987284..1987299Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 1987285..1987299 +
1681387043.2069116-UTR-H-akashiwo_Contig10:1988084..19883581681387043.2069116-UTR-H-akashiwo_Contig10:1988084..1988358Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 1988085..1988358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.1777291-CDS-H-akashiwo_Contig10:1987299..19874101681387043.1777291-CDS-H-akashiwo_Contig10:1987299..1987410Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 1987300..1987410 +
1681387043.188046-CDS-H-akashiwo_Contig10:1987598..19877901681387043.188046-CDS-H-akashiwo_Contig10:1987598..1987790Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 1987599..1987790 +
1681387043.1971998-CDS-H-akashiwo_Contig10:1987952..19880841681387043.1971998-CDS-H-akashiwo_Contig10:1987952..1988084Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 1987953..1988084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.36.1prot_H-akashiwo_Contig10.36.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 1987300..1988084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.36.1

>prot_H-akashiwo_Contig10.36.1 ID=prot_H-akashiwo_Contig10.36.1|Name=mRNA_H-akashiwo_Contig10.36.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=145bp
MIWPFLPRKSIFFDTLQQFEDDPQLRNAQIMGVDIWETNSYFKIKIDVPG
VSTEDLQVDIDKNAEIMTVAAKRTVKEHDSSDSPAKKIQSERTAELYRSF
RVPQGADYEKIDACLQNGVLELTIQKDKNTERGARRTIKVRSKL*
back to top

mRNA from alignment at H-akashiwo_Contig10:1987285..1988358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.36.1 ID=mRNA_H-akashiwo_Contig10.36.1|Name=mRNA_H-akashiwo_Contig10.36.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1074bp|location=Sequence derived from alignment at H-akashiwo_Contig10:1987285..1988358+ (Heterosigma akashiwo CCMP452)
ACATCACATAACAAAATGATCTGGCCTTTTCTGCCTAGAAAGAGCATTTT TTTCGATACTCTGCAACAGTTCGAGGATGATCCTCAACTCAGAAACGCGC AAATAATGGGGGTCGATATCTGGGAGGTCAGACCTTCTTGTTTTTTCTAC ATGAGTTATACATAGTTTGTTAACGATTTGAACGTTTTGTCGTGATGAGG GGTTTCCAGTGTGTTCCTACCTGCATTCTTCTGTAGTTGGGCTAATTTTT TGGTTCCATGTCTTCCTTTAACCCGTCAGTATCATGCATGATCACTCGGA ATTTATGACGGCAGACAAACAGTTACTTCAAAATCAAAATCGATGTGCCT GGAGTTAGCACAGAAGACCTCCAAGTTGATATTGATAAAAATGCGGAGAT TATGACGGTGGCCGCGAAAAGGACAGTAAAGGAACACGATAGCAGTGACA GTCCTGCGAAGAAAATTCAAAGTGAACGCACTGCAGAACTTTATCGTAGC TTCAGGGTAAGATGGCAGGCGCCGCCACTACTATTATGACTACAACGACG TGGTACTATCCTACTAAACAATTTCACATTGCATCACTGTTCGACAAAAA CGACGTGGTACTATCCAGGCACATCATTTGCACCCCCCCCCCCCCCCTCC TCCCTCCACACTGAATAGGTTCCTCAGGGTGCGGATTATGAAAAAATTGA TGCGTGTCTCCAGAACGGAGTCCTTGAGCTCACCATCCAAAAGGATAAAA ATACTGAGAGAGGAGCAAGAAGAACAATTAAAGTTAGATCGAAGCTGTGA AAGATTGGACTGCTCACTGATATCATCGTGCTGCTGCAGTGTGGGTTGAT CCACTACTATACATCCTTTTTATTCTTCTTCTTCTATGTATGTATATGTT TTTTATTATTATTTTCCTTTCTCCTTCTCCTATCGCAGAAAAACAAGGAT CAAGTGTGTAGATTTATTGCTGAAAAGGCAATATATATTAGTCATCCATA TGGATAAGGAGTTGTTGAACCTAAGCACAACAATTTTACATCATGTTGTT TGATTCTTAATATAATGCCACTAC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig10:1987285..1988358+

>mRNA_H-akashiwo_Contig10.36.1 ID=mRNA_H-akashiwo_Contig10.36.1|Name=mRNA_H-akashiwo_Contig10.36.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=435bp|location=Sequence derived from alignment at H-akashiwo_Contig10:1987285..1988358+ (Heterosigma akashiwo CCMP452)
ATGATCTGGCCTTTTCTGCCTAGAAAGAGCATTTTTTTCGATACTCTGCA
ACAGTTCGAGGATGATCCTCAACTCAGAAACGCGCAAATAATGGGGGTCG
ATATCTGGGAGACAAACAGTTACTTCAAAATCAAAATCGATGTGCCTGGA
GTTAGCACAGAAGACCTCCAAGTTGATATTGATAAAAATGCGGAGATTAT
GACGGTGGCCGCGAAAAGGACAGTAAAGGAACACGATAGCAGTGACAGTC
CTGCGAAGAAAATTCAAAGTGAACGCACTGCAGAACTTTATCGTAGCTTC
AGGGTTCCTCAGGGTGCGGATTATGAAAAAATTGATGCGTGTCTCCAGAA
CGGAGTCCTTGAGCTCACCATCCAAAAGGATAAAAATACTGAGAGAGGAG
CAAGAAGAACAATTAAAGTTAGATCGAAGCTGTGA
back to top