mRNA_H-akashiwo_Contig10.105.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.105.1
Unique NamemRNA_H-akashiwo_Contig10.105.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.105.1 vs. uniprot
Match: A0A7S3XVW5_HETAK (Vacuolar protein 8 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVW5_HETAK)

HSP 1 Score: 132 bits (332), Expect = 1.100e-34
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 RDCVPGDAPLERGQASYFEGLVGLGDAVWFPHREPEWPYFTEENKGNESLGQDRIRP 171
            RDCVPGDAPLERGQASYFEGLVGLGDAVWFPHREPEWPYFTEENKGNESLGQDRIRP
Sbjct:  463 RDCVPGDAPLERGQASYFEGLVGLGDAVWFPHREPEWPYFTEENKGNESLGQDRIRP 519
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XVW5_HETAK1.100e-34100.00Vacuolar protein 8 n=1 Tax=Heterosigma akashiwo Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:4423977..4424582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size172
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.0176718-CDS-H-akashiwo_Contig10:4423977..44240221681387042.0176718-CDS-H-akashiwo_Contig10:4423977..4424022Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 4423978..4424022 -
1681387042.0266027-CDS-H-akashiwo_Contig10:4424456..44245821681387042.0266027-CDS-H-akashiwo_Contig10:4424456..4424582Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 4424457..4424582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.105.1prot_H-akashiwo_Contig10.105.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 4423978..4424582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.105.1

>prot_H-akashiwo_Contig10.105.1 ID=prot_H-akashiwo_Contig10.105.1|Name=mRNA_H-akashiwo_Contig10.105.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=57bp
RDCVPGDAPLERGQASYFEGLVGLGDAVWFPHREPEWPYFTEENKGNESL
GQDRIRP
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mRNA from alignment at H-akashiwo_Contig10:4423977..4424582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.105.1 ID=mRNA_H-akashiwo_Contig10.105.1|Name=mRNA_H-akashiwo_Contig10.105.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=606bp|location=Sequence derived from alignment at H-akashiwo_Contig10:4423977..4424582- (Heterosigma akashiwo CCMP452)
CGCGACTGCGTGCCCGGGGACGCGCCGCTGGAGCGGGGGCAGGCCTCCTA
CTTCGAGGGGCTCGTCGGCCTGGGCGACGCCGTCTGGTTCCCGCACCGCG
AGCCCGAGTGGCCCTACTTCACGGAGGTCCGTCCCCCCGGGCGGGCGCGC
GCCAAGGGGGGAGCCGGCGGGTTCCTCCTTCTGGGTGCAATTTAAAAAAA
AAAAAAAGGCCATATATCCTTGTTGGGAATCGCTCTCAAATACATCGATA
GTCATCCAAAAGACTGGGCCTTAAATAAATTGAAATCATCATCAACAACC
CTCTGATTCTTTGCACCACCACCATAATAGCACCAAACTGTTGGGGTGCA
CTGTGATTCCTTCCATATGGACGATTTGCCTGGATTTGCGGCAAAGATCT
GATCGTAGGCCCACAGTAGCTACTTAGGGGCAAACCAAACGGCATTGAAC
ATATATATATAGTGTCTTGCCCTTTTTTGCCCATCAGCAAAGCCAACCTT
GCCCAACCTCTTTTTGCGTGTTTTCGTATTGGTGTGTGCACGCCCGGGGG
GGGGGGGCAGGAGAATAAGGGGAACGAGAGCTTGGGCCAGGACCGCATCC
GGCCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:4423977..4424582-

>mRNA_H-akashiwo_Contig10.105.1 ID=mRNA_H-akashiwo_Contig10.105.1|Name=mRNA_H-akashiwo_Contig10.105.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=171bp|location=Sequence derived from alignment at H-akashiwo_Contig10:4423977..4424582- (Heterosigma akashiwo CCMP452)
CGCGACTGCGTGCCCGGGGACGCGCCGCTGGAGCGGGGGCAGGCCTCCTA
CTTCGAGGGGCTCGTCGGCCTGGGCGACGCCGTCTGGTTCCCGCACCGCG
AGCCCGAGTGGCCCTACTTCACGGAGGAGAATAAGGGGAACGAGAGCTTG
GGCCAGGACCGCATCCGGCCC
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