mRNA_H-akashiwo_Contig1.230.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.230.1
Unique NamemRNA_H-akashiwo_Contig1.230.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.230.1 vs. uniprot
Match: A0A7S4D8F8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8F8_HETAK)

HSP 1 Score: 259 bits (661), Expect = 5.770e-82
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 
Query:    1 LVSARPVEPKDEELLRRLREERAKRALEAEAQELEAEAAEEARVAGELRAEEDAADAAQEGGRNPKVEGTNVHYTFSTGRRPRGMTSRGDFKYEAAGAGEGQVLRAFPGCVLFLPLPFGGXXXXXXXXXTPVASYTLTLELSLDRLPLQGQLG 459
            LVSARPVEPKDEELLRRLREERAKRALEAEAQELEAEAAEEARVAGELRAEEDAADAAQEGGRNPKVEGTNVHYTFSTGRRPRGMTSRGDFKYEAAGAGEGQVLRAFPGCVLFLPLPFGGXXXXXXXXXTPVASYTLTLELSLDRLPLQGQLG
Sbjct:  177 LVSARPVEPKDEELLRRLREERAKRALEAEAQELEAEAAEEARVAGELRAEEDAADAAQEGGRNPKVEGTNVHYTFSTGRRPRGMTSRGDFKYEAAGAGEGQVLRAFPGCVLFLPLPFGGXXXXXXXXXTPVASYTLTLELSLDRLPLQGQLG 329
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BLAST of mRNA_H-akashiwo_Contig1.230.1 vs. uniprot
Match: A0A3P3YPG6_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YPG6_PLABS)

HSP 1 Score: 65.1 bits (157), Expect = 2.490e-9
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  166 DAAQEGGRNPKVEGTNVHYTFSTGRRPRGMTSRGDFKYEAAGAGEGQVLRAFPGCVLFLPLPFGGXXXXXXXXXTPVASYTLTLELSLDRLP 441
            DAAQ GG NPK+    +++ FSTGRRPRG+TS GD  Y  A       LR      LFLPLPF G           + +Y++T+E+ +++LP
Sbjct: 3902 DAAQAGGHNPKITNEQIYFDFSTGRRPRGVTSLGDIAY--ASDSYSTWLRVLRLGSLFLPLPFPGNGGGAH-----LNTYSMTMEILVEQLP 3986
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4D8F8_HETAK5.770e-82100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3P3YPG6_PLABS2.490e-942.39Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:9383127..9383904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size461
Hectar predicted targeting categoryother localisation
Exons2
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387039.0175242-CDS-H-akashiwo_Contig1:9383126..93832101681387039.0175242-CDS-H-akashiwo_Contig1:9383126..9383210Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9383127..9383210 +
1681387039.0260382-CDS-H-akashiwo_Contig1:9383527..93839021681387039.0260382-CDS-H-akashiwo_Contig1:9383527..9383902Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9383528..9383902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.230.1prot_H-akashiwo_Contig1.230.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 9383127..9383902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.230.1

>prot_H-akashiwo_Contig1.230.1 ID=prot_H-akashiwo_Contig1.230.1|Name=mRNA_H-akashiwo_Contig1.230.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=153bp
LVSARPVEPKDEELLRRLREERAKRALEAEAQELEAEAAEEARVAGELRA
EEDAADAAQEGGRNPKVEGTNVHYTFSTGRRPRGMTSRGDFKYEAAGAGE
GQVLRAFPGCVLFLPLPFGGAGAGAPRPTTPVASYTLTLELSLDRLPLQG
QLG
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mRNA from alignment at H-akashiwo_Contig1:9383127..9383904+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.230.1 ID=mRNA_H-akashiwo_Contig1.230.1|Name=mRNA_H-akashiwo_Contig1.230.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=778bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9383127..9383904+ (Heterosigma akashiwo CCMP452)
CTGGTCTCCGCCCGGCCCGTGGAGCCCAAGGACGAGGAGCTGCTTCGGCG
GCTGCGCGAGGAGAGGGCCAAGCGGGCGCTGGAGGTGAGGATGGCGACGC
TGCGCGAAGAGAACGTTCTCGGGGACTCGCATGTTATTTTTTTCACCTAC
TGTTGCCGCTGTTCCGTGCTATCGATACGCACGACTCCTCCATCGATCTG
CTCTTGATAGAAAGTGCTTCCCAACTGGCATGGATCTTAGCCAGACTGGC
CGATGTCCTATAGATGGGCTGTCTGTGGAATGTTCGACTGCGCAGAAGGT
GTTTTACCTTCCCTTCCACCTTTGCCTGGATGTCACCCACAGTGGCATTG
CCCCCTCCTTTCCCCCGCGCCCTTGCGTCGGTGCGGTGCGCTGCCCGCCA
GGCGGAGGCACAAGAGCTCGAGGCCGAGGCCGCCGAGGAGGCACGCGTGG
CCGGGGAGCTGCGCGCGGAGGAGGACGCGGCGGACGCGGCCCAGGAGGGC
GGCCGCAACCCCAAGGTGGAGGGCACGAACGTGCACTACACCTTCAGCAC
GGGCCGCCGGCCGCGGGGCATGACCTCGCGCGGGGACTTCAAGTACGAGG
CGGCGGGCGCGGGCGAGGGCCAGGTGCTGCGCGCGTTCCCCGGCTGCGTG
CTCTTCCTGCCGCTGCCCTTCGGCGGCGCCGGCGCCGGCGCGCCCCGGCC
AACGACGCCCGTGGCCAGCTACACGCTGACGCTGGAGCTGTCGCTGGACC
GGCTGCCGCTGCAGGGGCAGCTGGGCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:9383127..9383904+

>mRNA_H-akashiwo_Contig1.230.1 ID=mRNA_H-akashiwo_Contig1.230.1|Name=mRNA_H-akashiwo_Contig1.230.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=459bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9383127..9383904+ (Heterosigma akashiwo CCMP452)
CTGGTCTCCGCCCGGCCCGTGGAGCCCAAGGACGAGGAGCTGCTTCGGCG
GCTGCGCGAGGAGAGGGCCAAGCGGGCGCTGGAGGCGGAGGCACAAGAGC
TCGAGGCCGAGGCCGCCGAGGAGGCACGCGTGGCCGGGGAGCTGCGCGCG
GAGGAGGACGCGGCGGACGCGGCCCAGGAGGGCGGCCGCAACCCCAAGGT
GGAGGGCACGAACGTGCACTACACCTTCAGCACGGGCCGCCGGCCGCGGG
GCATGACCTCGCGCGGGGACTTCAAGTACGAGGCGGCGGGCGCGGGCGAG
GGCCAGGTGCTGCGCGCGTTCCCCGGCTGCGTGCTCTTCCTGCCGCTGCC
CTTCGGCGGCGCCGGCGCCGGCGCGCCCCGGCCAACGACGCCCGTGGCCA
GCTACACGCTGACGCTGGAGCTGTCGCTGGACCGGCTGCCGCTGCAGGGG
CAGCTGGGC
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