mRNA_H-akashiwo_Contig1.176.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.176.1
Unique NamemRNA_H-akashiwo_Contig1.176.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1.176.1 vs. uniprot
Match: A0A6V1RCM3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RCM3_HETAK)

HSP 1 Score: 295 bits (756), Expect = 6.670e-97
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 2
Query:    2 LWRHDLKVKHVGCADIAKAAVVMFKDPRAWKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRLAMRDLYNMVAFFENPGYSSSIEEFKAVVPDAQSPLDFFQAKGQWGNGEPFAPLEDGNLADPPTKCVIS 421
            LWRHDLKVKHVGCADIAKAAVVMFKDPRAWKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRLAMRDLYNMVAFFENPGYSSSIEEFKAVVPDAQSPLDFFQAKGQWGNGEPFAPLEDGNLADPPTKCVIS
Sbjct:  181 LWRHDLKVKHVGCADIAKAAVVMFKDPRAWKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRLAMRDLYNMVAFFENPGYSSSIEEFKAVVPDAQSPLDFFQAKGQWGNGEPFAPLEDGNLADPPTKCVIS 320          
BLAST of mRNA_H-akashiwo_Contig1.176.1 vs. uniprot
Match: A0A7S1HRZ5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HRZ5_9EUGL)

HSP 1 Score: 162 bits (411), Expect = 2.930e-44
Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 2
Query:    2 LWRHDLKVKHVGCADIAKAAVVMFKDPRAWKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRLAMRDLYNMVAFFENPGYSSSIEEFKAVVPDAQSPLDFFQAKGQWGNGEPFAP 373
            LW   LKVK V C DIAKAA  M   P  W+GKTLDC +C  +G ++A++LS+ SGV+C+YK  +P   M L MRDLYNMVAFF  PGYSSSIE+FK VVPDA  P D+F+AKG W NGE F P
Sbjct:  128 LWPATLKVKMVACVDIAKAAKEMLASPAEWQGKTLDCAACNASGHDLANSLSEVSGVKCSYKKAVPGLAMWLFMRDLYNMVAFFMGPGYSSSIEDFKKVVPDAMGPKDWFKAKGVWSNGEAFKP 251          
BLAST of mRNA_H-akashiwo_Contig1.176.1 vs. uniprot
Match: A0A7S3T3Y6_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3T3Y6_9SPIT)

HSP 1 Score: 147 bits (371), Expect = 4.410e-39
Identity = 69/121 (57.02%), Postives = 80/121 (66.12%), Query Frame = 2
Query:    5 WRHDLKVKHVGCADIAKAAVVMFKDPRAWKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRLAMRDLYNMVAFFENPGYSSSIEEFKAVVPDAQSPLDFFQAKGQWGNGEPF 367
            WR DLK+K+V C DI KAA VMF  P  WKGKTLDC S E+TGDE A AL++ SG  C Y   +P+F M+  M+DL  MV FFE PGYSS I +FK VVP A     FF   GQW +GE F
Sbjct:  183 WRGDLKLKYVACEDIGKAAAVMFATPLVWKGKTLDCASDELTGDEAAEALTEVSGTPCKYSTAMPTFFMKWFMKDLAAMVKFFEEPGYSSDITKFKQVVPSAMDAKAFFAKTGQWSDGEKF 303          
BLAST of mRNA_H-akashiwo_Contig1.176.1 vs. uniprot
Match: A0A7S3ZVY2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVY2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.640e-37
Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 2
Query:    2 LWRHDLKVKHVGCADIAKAAVVMFKDPRAWKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRLAMRDLYNMVAFFENPGYSSSIEEFKAVVPDAQSPLDFFQAKG 343
            LW+ DLKVKHV C DI KAA VM  +P  W+GKTLDC S ++TG+++A+AL++ SGV CTY V +P FIMR  M+DL  M+ FFE  GY S I  FKAVVPDA     +F+A+G
Sbjct:  170 LWQADLKVKHVACRDIGKAAAVMLANPAKWRGKTLDCASDDLTGEDVAAALTEVSGVECTYGVAVPRFIMRCVMKDLNAMIEFFETTGYDSDIAAFKAVVPDALDCKAWFEARG 283          
BLAST of mRNA_H-akashiwo_Contig1.176.1 vs. uniprot
Match: A0A7R9W039_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W039_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.030e-29
Identity = 58/126 (46.03%), Postives = 86/126 (68.25%), Query Frame = 2
Query:    2 LWRHDLKVKHVGCADIAKAAVVMFKDPRA-WKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRLAMRDLYNMVAFFENPGYSSSIEEFKAVVPDAQSPLDFFQAKGQWGN--GEPFA 370
            L   DL VK++G  D+ KA+  +  D RA ++GKT +  SC  TG E+A  L++ASGV CTY   +P F+  L M ++Y+M+ FF++PGYS+S+EEF+ +VPDA +  D+F+ KG+W +  GE FA
Sbjct:   69 LTEKDLPVKYIGMPDLGKASKAILIDKRAEFEGKTFEAASCIHTGTELAECLTKASGVPCTYSKQMPEFVFWLFMGEIYHMIQFFKDPGYSASVEEFQKLVPDAMNAEDWFRYKGEWSSPAGEKFA 194          
BLAST of mRNA_H-akashiwo_Contig1.176.1 vs. uniprot
Match: A0A7S1BKF7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKF7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.640e-26
Identity = 47/122 (38.52%), Postives = 77/122 (63.11%), Query Frame = 2
Query:    2 LWRHDLKVKHVGCADIAKAAVVMFKDPRAWKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRLAMRDLYNMVAFFENPGYSSSIEEFKAVVPDAQSPLDFFQAKGQWGNGEPF 367
            L + ++ +K+V   D+ K +  +  DP  +KG  ++    + TG E+A AL++ SGV CTY + +P +++     DLYNMV +FE+ GY++ ++EFK +VPDA     +F+ KGQW +GE F
Sbjct:   54 LTKPEVSLKYVATIDVGKGSAELLLDPAKYKGTPIEAAGGKHTGTELAQALTEVSGVDCTYSISLPRWVLWFMFGDLYNMVVWFESDGYTADLDEFKKLVPDAMDAKAWFKDKGQWADGETF 175          
BLAST of mRNA_H-akashiwo_Contig1.176.1 vs. uniprot
Match: A0A7S3VCV3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCV3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.910e-25
Identity = 49/123 (39.84%), Postives = 81/123 (65.85%), Query Frame = 2
Query:    2 LWRHDLKVKHVGCADIAKAAVVMFKDPRAWKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRLAMRDLYNMVAFFENPG-YSSSIEEFKAVVPDAQSPLDFFQAKGQWGNGEPF 367
            L + +   +++   D+ KA+ V+  +P  +KGKT++ V+ +  G ++A+AL++ASG+ CT+ + +P   +RL   DLY MV +FE  G Y++ IEEFK +VPDA     +F++KG+W NGE F
Sbjct:  253 LTKEETSCQYISIVDVGKASAVLLTEPGTYKGKTIEAVADKCNGTDLATALTEASGMECTFSMAMPRMALRLMDSDLYQMVTWFEETGGYTADIEEFKKIVPDAMDAKAWFESKGKWANGELF 375          
BLAST of mRNA_H-akashiwo_Contig1.176.1 vs. uniprot
Match: A0A7S3QBA5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBA5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.010e-24
Identity = 49/123 (39.84%), Postives = 81/123 (65.85%), Query Frame = 2
Query:    2 LWRHDLKVKHVGCADIAKAAVVMFKDPRAWKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRLAMRDLYNMVAFFENPG-YSSSIEEFKAVVPDAQSPLDFFQAKGQWGNGEPF 367
            L + +   +++   D+ KA+ V+  +P  +KGKT++ V+ +  G ++A+AL++ASG+ CT+ + +P   +RL   DLY MV +FE  G Y++ IEEFK +VPDA     +F++KG+W NGE F
Sbjct:  456 LTKEETSCQYISIVDVGKASAVLLTEPGTYKGKTIEAVADKCNGTDLATALTEASGMECTFSMAMPRMALRLMDSDLYQMVTWFEETGGYTADIEEFKKIVPDAMDAKAWFESKGKWANGELF 578          
BLAST of mRNA_H-akashiwo_Contig1.176.1 vs. uniprot
Match: A0A7R9YZ43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YZ43_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.720e-15
Identity = 43/115 (37.39%), Postives = 66/115 (57.39%), Query Frame = 2
Query:    2 LWRHDLKVKHVGCADIAKAAVVMFKDPRAWKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRLAMRDLYNMV----AFFENPGYSSSIEEFKAVVPDAQSPLDFFQ 334
            L++  ++V +V  AD+ KA V+  ++P  W GKTL C++C  TG+E+    S+ SG+ CTY      FI+R  + DLY+MV    A      +S  I  F+ V+P+A   +DF Q
Sbjct:   82 LYKGWVQVNYVATADVGKATVLTAQNPCEWNGKTLACITCRDTGEELTKVFSKVSGISCTYTAAPLQFILRQLLTDLYHMVVLRRATSAGSWWSEEIRAFRKVLPNA---VDFEQ 193          
BLAST of mRNA_H-akashiwo_Contig1.176.1 vs. uniprot
Match: A0A7S2RUB1_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RUB1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.310e-11
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 2
Query:    2 LWRHDLKVKHVGCADIAKAAVVMFKDPRAWKGKTLDCVSCEVTGDE 139
            LW HDLK+K V C DI KAA  M ++P+AW+ KTLDCVSC VTGD+
Sbjct:  175 LWPHDLKLKMVSCHDIGKAAAAMIENPKAWQDKTLDCVSCCVTGDQ 220          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6V1RCM3_HETAK6.670e-97100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1HRZ5_9EUGL2.930e-4460.48Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3T3Y6_9SPIT4.410e-3957.02Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S3ZVY2_9STRA3.640e-3757.02Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9W039_9STRA1.030e-2946.03Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1BKF7_9STRA4.640e-2638.52Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3VCV3_9STRA4.910e-2539.84Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3QBA5_9STRA2.010e-2439.84Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7R9YZ43_9STRA1.720e-1537.39Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2RUB1_9STRA3.310e-1165.22Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:7372588..7373365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1463920.JOGB01000074_gene1197
PFAMsNmrA
Model size778
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.79e-06
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,2GK1A@201174|Actinobacteria
DescriptionNmrA family
Cds size357
COG categoryGM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387037.2391527-UTR-H-akashiwo_Contig1:7372587..73726541681387037.2391527-UTR-H-akashiwo_Contig1:7372587..7372654Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 7372588..7372654 +
1681387037.263988-UTR-H-akashiwo_Contig1:7373011..73733651681387037.263988-UTR-H-akashiwo_Contig1:7373011..7373365Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 7373012..7373365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387037.250074-CDS-H-akashiwo_Contig1:7372654..73730111681387037.250074-CDS-H-akashiwo_Contig1:7372654..7373011Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 7372655..7373011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.176.1prot_H-akashiwo_Contig1.176.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 7372655..7373011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.176.1

>prot_H-akashiwo_Contig1.176.1 ID=prot_H-akashiwo_Contig1.176.1|Name=mRNA_H-akashiwo_Contig1.176.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=119bp
MFKDPRAWKGKTLDCVSCEVTGDEIASALSQASGVRCTYKVLIPSFIMRL
AMRDLYNMVAFFENPGYSSSIEEFKAVVPDAQSPLDFFQAKGQWGNGEPF
APLEDGNLADPPTKCVIS*
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mRNA from alignment at H-akashiwo_Contig1:7372588..7373365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.176.1 ID=mRNA_H-akashiwo_Contig1.176.1|Name=mRNA_H-akashiwo_Contig1.176.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=778bp|location=Sequence derived from alignment at H-akashiwo_Contig1:7372588..7373365+ (Heterosigma akashiwo CCMP452)
GTTATGGCGGCATGACTTGAAGGTCAAACATGTAGGATGTGCTGACATTG CTAAAGCAGCGGTGGTGATGTTTAAAGACCCCAGGGCCTGGAAGGGCAAA ACCCTAGACTGTGTTTCATGCGAAGTAACTGGTGATGAGATTGCTTCTGC TCTCTCTCAAGCATCTGGTGTGAGATGTACGTACAAAGTACTAATCCCTT CCTTTATTATGCGCCTTGCCATGCGTGACTTGTACAACATGGTGGCTTTC TTTGAGAATCCAGGATACAGCAGCTCCATTGAAGAGTTTAAGGCAGTTGT CCCTGATGCTCAAAGCCCACTTGACTTTTTCCAGGCCAAGGGTCAGTGGG GTAATGGTGAGCCATTTGCTCCTCTGGAAGACGGAAACTTGGCAGATCCC CCAACAAAATGTGTCATTTCTTAGCAATGCTCCTATGTTGGGTGATGCTA CCACTGTCGTGGCTCTCGCACAGGGGTGTACTGCTGCGTGCGGTGTTTCA AGATCATCATCATACATGATTGGCTGAAGAAAACAGGCGACAGACGTTCC ACTTTTTTGATAATGTGTCTGAGAACGTCAGTCGGCCAATGAGAGGCCGC TCAGAAGTTTGAGAACGTTGTTTTAAGCCCTCGGTGGCTATGGTACTTAT TTGCAGATTTGCACCCCTTCAATTACTTTTTTCATCTTTAAGGCTTATTT GCAGCTATGCACCCCCCCAAATTTTTTTTCATCTTGAAGGTTTTATTATT TTTGGAATAATCATGAAAATATTTGACA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:7372588..7373365+

>mRNA_H-akashiwo_Contig1.176.1 ID=mRNA_H-akashiwo_Contig1.176.1|Name=mRNA_H-akashiwo_Contig1.176.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=357bp|location=Sequence derived from alignment at H-akashiwo_Contig1:7372588..7373365+ (Heterosigma akashiwo CCMP452)
ATGTTTAAAGACCCCAGGGCCTGGAAGGGCAAAACCCTAGACTGTGTTTC
ATGCGAAGTAACTGGTGATGAGATTGCTTCTGCTCTCTCTCAAGCATCTG
GTGTGAGATGTACGTACAAAGTACTAATCCCTTCCTTTATTATGCGCCTT
GCCATGCGTGACTTGTACAACATGGTGGCTTTCTTTGAGAATCCAGGATA
CAGCAGCTCCATTGAAGAGTTTAAGGCAGTTGTCCCTGATGCTCAAAGCC
CACTTGACTTTTTCCAGGCCAAGGGTCAGTGGGGTAATGGTGAGCCATTT
GCTCCTCTGGAAGACGGAAACTTGGCAGATCCCCCAACAAAATGTGTCAT
TTCTTAG
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