mRNA_H-akashiwo_Contig1.151.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.151.1
Unique NamemRNA_H-akashiwo_Contig1.151.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.151.1 vs. uniprot
Match: A0A7S4D9M6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9M6_HETAK)

HSP 1 Score: 191 bits (484), Expect = 1.020e-60
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:   88 MNPVFYLQVAVITLLFSAIFEDCRAFNLQPSRYQRLRWFGGPRSVWLAASEKANSDTAEIKQPIDLSIGEEPVRQPDVTPAVPQPSTNALMDQ 366
            MNPVFYLQVAVITLLFSAIFEDCRAFNLQPSRYQRLRWFGGPRSVWLAASEKANSDTAEIKQPIDLSIGEEPVRQPDVTPAVPQPSTNALMDQ
Sbjct:    1 MNPVFYLQVAVITLLFSAIFEDCRAFNLQPSRYQRLRWFGGPRSVWLAASEKANSDTAEIKQPIDLSIGEEPVRQPDVTPAVPQPSTNALMDQ 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D9M6_HETAK1.020e-60100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:6313337..6314412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size381
Hectar predicted targeting categorysignal peptide
Exons4
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387031.2083626-CDS-H-akashiwo_Contig1:6313336..63134131681387031.2083626-CDS-H-akashiwo_Contig1:6313336..6313413Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 6313337..6313413 -
1681387031.216448-CDS-H-akashiwo_Contig1:6313813..63138971681387031.216448-CDS-H-akashiwo_Contig1:6313813..6313897Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 6313814..6313897 -
1681387031.224367-CDS-H-akashiwo_Contig1:6314083..63141911681387031.224367-CDS-H-akashiwo_Contig1:6314083..6314191Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 6314084..6314191 -
1681387031.2334228-CDS-H-akashiwo_Contig1:6314300..63143251681387031.2334228-CDS-H-akashiwo_Contig1:6314300..6314325Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 6314301..6314325 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387031.243319-UTR-H-akashiwo_Contig1:6314325..63144121681387031.243319-UTR-H-akashiwo_Contig1:6314325..6314412Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 6314326..6314412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.151.1prot_H-akashiwo_Contig1.151.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 6313337..6314325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.151.1

>prot_H-akashiwo_Contig1.151.1 ID=prot_H-akashiwo_Contig1.151.1|Name=mRNA_H-akashiwo_Contig1.151.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=98bp
MNPVFYLQVAVITLLFSAIFEDCRAFNLQPSRYQRLRWFGGPRSVWLAAS
EKANSDTAEIKQPIDLSIGEEPVRQPDVTPAVPQPSTNALMDQVVLY*
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mRNA from alignment at H-akashiwo_Contig1:6313337..6314412-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.151.1 ID=mRNA_H-akashiwo_Contig1.151.1|Name=mRNA_H-akashiwo_Contig1.151.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1076bp|location=Sequence derived from alignment at H-akashiwo_Contig1:6313337..6314412- (Heterosigma akashiwo CCMP452)
CGTTGATGGGCCCTTTACCTTTATTTTCACAATAATAACAGAAAGAACGC
GCCTAATTCCAGAGGGCGGTAACAGGCGCGCCTTCAAATGAATCCAGTCT
TCTACCTTCAAGGTCATAAAGATTATTGCGCACTCCACGAGAAATTGAAA
TCCTTTTTTGTTTTCAGGCTGTAGACTTCCAATGTGTTCCTATTTTATTT
TTTGACTTTGAATGTCCGCAGTGGCAGTGATCACCCTGCTATTTTCTGCC
ATATTTGAGGACTGTCGAGCATTTAACTTACAGCCTTCAAGGTATCAAAG
GTTGCGGTGGTTTGGAGGCCCTAGATCTGGTTAGTGTCAAATACACGCCA
ATTGTTTGTAAAATATTACAAAAATAAATATATAAATATAATAATAAAAT
AAGTAAGTAAATTTAAATGAACAACTGCCACCATACCAAAACCATCCCAA
CTTAGATAGTCGACTTATCATGTCGTTTTTACTTTTTCGCCGCTTAATAC
TGCTGCTTTGGGAAGTTTGGCTTGCAGCCTCTGAAAAAGCAAATAGCGAT
ACTGCAGAGATTAAACAACCAATTGACTTGTCTATTGGCGAAGAACCAGG
TACTTTTGACTCTAACAGCATTCAATTAACTCAACGCAGCTTTTGTATTG
TAAGCACTTGAACATGAAAAGTCTTGCGTTACTAGTCACTGATGCATCTT
ATTTATGGGGTTGGATATCATGGTATAAATACTTTGTATTGTAAGCACTT
GAACGTCACAACACAAGTGTCGCCTTACTAGTGACTGATACATCTCATTT
ATGGGGGTGGATATCATTATATCATAACTTCAAGTAATTAATAGAATACA
TAATTATAGTAAGGTCCCACTCAATATTTTTGAGCAAATACAACAAATGT
CCTTCTGGGCGTTTATAGTTGACGTCTCTATCGCAAATTCACAAAGGTTT
CTTTCGTGCCTCCTCCCGATCATACGCTGATTAAACATTTCAATGCCAGT
TCGTCAGCCGGATGTGACTCCTGCTGTGCCTCAACCCTCTACCAATGCCT
TGATGGATCAGGTTGTACTATATTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:6313337..6314412-

>mRNA_H-akashiwo_Contig1.151.1 ID=mRNA_H-akashiwo_Contig1.151.1|Name=mRNA_H-akashiwo_Contig1.151.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=294bp|location=Sequence derived from alignment at H-akashiwo_Contig1:6313337..6314412- (Heterosigma akashiwo CCMP452)
ATGAATCCAGTCTTCTACCTTCAAGTGGCAGTGATCACCCTGCTATTTTC
TGCCATATTTGAGGACTGTCGAGCATTTAACTTACAGCCTTCAAGGTATC
AAAGGTTGCGGTGGTTTGGAGGCCCTAGATCTGTTTGGCTTGCAGCCTCT
GAAAAAGCAAATAGCGATACTGCAGAGATTAAACAACCAATTGACTTGTC
TATTGGCGAAGAACCAGTTCGTCAGCCGGATGTGACTCCTGCTGTGCCTC
AACCCTCTACCAATGCCTTGATGGATCAGGTTGTACTATATTGA
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