mRNA_H-akashiwo_Contig1.123.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.123.1
Unique NamemRNA_H-akashiwo_Contig1.123.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:4978733..4979152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size157
Hectar predicted targeting categorysignal peptide
Exons2
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387030.331295-CDS-H-akashiwo_Contig1:4978732..49787641681387030.331295-CDS-H-akashiwo_Contig1:4978732..4978764Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 4978733..4978764 -
1681387030.3405542-CDS-H-akashiwo_Contig1:4979027..49791391681387030.3405542-CDS-H-akashiwo_Contig1:4979027..4979139Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 4979028..4979139 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387030.3498037-UTR-H-akashiwo_Contig1:4979139..49791521681387030.3498037-UTR-H-akashiwo_Contig1:4979139..4979152Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 4979140..4979152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.123.1prot_H-akashiwo_Contig1.123.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 4978733..4979139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.123.1

>prot_H-akashiwo_Contig1.123.1 ID=prot_H-akashiwo_Contig1.123.1|Name=mRNA_H-akashiwo_Contig1.123.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=48bp
MQLACIILGAVICALIVFDLSEAFQSGENKISRTKAVDYRPQQLFYDR
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mRNA from alignment at H-akashiwo_Contig1:4978733..4979152-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.123.1 ID=mRNA_H-akashiwo_Contig1.123.1|Name=mRNA_H-akashiwo_Contig1.123.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=420bp|location=Sequence derived from alignment at H-akashiwo_Contig1:4978733..4979152- (Heterosigma akashiwo CCMP452)
TATCAACATTCAGATGCAGCTCGCTTGTATCATTCTTGGTGCTGTTATAT
GCGCTTTGATTGTTTTTGATCTCTCAGAGGCATTCCAAAGTGGCGAGAAC
AAAATCTCGAGAACCAAAGCAGTAGGTGCGTCCTAAAGTAGTTTCTTGGC
TCTAAGTAACAAACATGCTGTCCTTGCGACTACATATTAGTCTACAGAAG
TTTTTGAATTGAATGGAAGGGATCCGGACATTAAGCTTGTTAAGCGGGTA
GGAATTGCCATAGAATTTCACAGGAAGTTTTCTACATTTGCGTAGCAAGA
CTAAAAAAAAGAAAATAGAACTTTGCATCACAACTAGGCTAAACCACCTA
CTGGATATACTGTACTGTACCTGGTGGTCTTCCCGCAGATTATCGTCCTC
AGCAGCTATTTTACGACAGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:4978733..4979152-

>mRNA_H-akashiwo_Contig1.123.1 ID=mRNA_H-akashiwo_Contig1.123.1|Name=mRNA_H-akashiwo_Contig1.123.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=144bp|location=Sequence derived from alignment at H-akashiwo_Contig1:4978733..4979152- (Heterosigma akashiwo CCMP452)
ATGCAGCTCGCTTGTATCATTCTTGGTGCTGTTATATGCGCTTTGATTGT
TTTTGATCTCTCAGAGGCATTCCAAAGTGGCGAGAACAAAATCTCGAGAA
CCAAAGCAGTAGATTATCGTCCTCAGCAGCTATTTTACGACAGA
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