mRNA_H-akashiwo_Contig1.106.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.106.1
Unique NamemRNA_H-akashiwo_Contig1.106.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.106.1 vs. uniprot
Match: A0A7S3XPS0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPS0_HETAK)

HSP 1 Score: 178 bits (451), Expect = 1.570e-55
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:   70 MAEEKINMEDTKEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRFTATKVAVFTWEGATLATAGEALVAYASEETPMEAYVNT 351
            MAEEKINMEDTKEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRFTATKVAVFTWEGATLATAGEALVAYASEETPMEAYVNT
Sbjct:    1 MAEEKINMEDTKEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRFTATKVAVFTWEGATLATAGEALVAYASEETPMEAYVNT 94
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BLAST of mRNA_H-akashiwo_Contig1.106.1 vs. uniprot
Match: A0A6H5KLD2_9PHAE (Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.610e-20
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   97 DTKEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRFTATKVAVFTWEGATLATAGEALVAYASEETPMEAYVNT 351
            +T+ W+L  E+ELRF+V AE  +TVVLKE  AE+FG+E+A   EY+F++TK AVFTW G T+ T G     Y ++ETPM++YVNT
Sbjct:    9 ETRTWVLQAETELRFDVSAEHTLTVVLKENTAEMFGIELAAEYEYKFSSTKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNT 93
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BLAST of mRNA_H-akashiwo_Contig1.106.1 vs. uniprot
Match: D8LR58_ECTSI (Protein CLP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR58_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.850e-20
Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   97 DTKEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRFTATKVAVFTWEGATLATAGEALVAYASEETPMEAYVNT 351
            +T+ W+L  E+ELRF+V AE  +TVVL+E  AE+FG+E+A   EY+F++TK AVFTW G T+ T G     Y ++ETPM++YVNT
Sbjct:    9 ETRTWVLQAETELRFDVSAEHTLTVVLRENTAEMFGIELAAEYEYKFSSTKAAVFTWYGCTIETTGWVSSIYVAQETPMKSYVNT 93
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BLAST of mRNA_H-akashiwo_Contig1.106.1 vs. uniprot
Match: A0A023FX20_AMBPA (Putative mrna cleavage and polyadenylation factor ia/ii complex subunit clp1 n=1 Tax=Amblyomma parvum TaxID=251391 RepID=A0A023FX20_AMBPA)

HSP 1 Score: 84.3 bits (207), Expect = 5.940e-18
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:   70 MAEEKINMEDT-KEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRF-TATKVAVFTWEGATLATAGEALVAYASEETPMEAYVN 348
            M+EEK   E+  +E+ + PESELRFEV+ ++ +T+ LK G AE+FGVE+ KN+++ F    KVAVFTW G TL   G+  VAY ++ETPM  Y N
Sbjct:    1 MSEEKETKEEAAQEFRIDPESELRFEVEGKEKVTIELKSGLAEIFGVELVKNKKFTFGPGAKVAVFTWHGCTLELCGKTEVAYVAKETPMIFYAN 95
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BLAST of mRNA_H-akashiwo_Contig1.106.1 vs. uniprot
Match: A0A835YJV7_9STRA (Protein CLP1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.660e-18
Identity = 51/87 (58.62%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   94 EDTKEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRFTA-TKVAVFTWEGATLATAGEALVAYASEETPMEAYVNT 351
            ED K W L  ESELRFEV  +K  TVVL E  AE+FGVE+A N EY F+A  KVAVFTW G  L T   A V Y +++TPM +YVNT
Sbjct:   10 EDKKIWTLEKESELRFEVGPDKSFTVVLLEQSAEIFGVELAVNTEYHFSAGAKVAVFTWYGCKLQTTRTAEVLYVAKDTPMLSYVNT 96
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BLAST of mRNA_H-akashiwo_Contig1.106.1 vs. uniprot
Match: UPI001455D1C3 (polyribonucleotide 5'-hydroxyl-kinase Clp1-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455D1C3)

HSP 1 Score: 86.7 bits (213), Expect = 1.520e-17
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:   91 MEDTKEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRFTA-TKVAVFTWEGATLATAGEALVAYASEETPMEAYVNT 351
            ++  KE+ LV ++ELRFEV+  +I+ V LKEG AEVFG E+ KNR Y+FTA +KVAV+TW G  L   G+  VAY +++TPM  Y+NT
Sbjct:   20 LQGMKEYRLVKDTELRFEVEKNEIVHVQLKEGLAEVFGTELLKNRTYKFTALSKVAVYTWHGCCLHLKGKTEVAYIAKDTPMTTYLNT 107
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BLAST of mRNA_H-akashiwo_Contig1.106.1 vs. uniprot
Match: A0A482SJV1_9ARCH (CLP1_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJV1_9ARCH)

HSP 1 Score: 79.7 bits (195), Expect = 5.180e-17
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   91 MEDTKEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRFTATKVAVFTWEGATLATAGEALVAYASEETPMEAYVNT 351
            M   +EW+L  E+ELR EV    ++T+ L  G AE+FGVEMA N+EY F    +AVFTW G ++ ++G     Y ++ TPM AYVNT
Sbjct:    1 MSTKREWVLQKETELRCEVSEATVLTLKLTAGNAEIFGVEMALNKEYSFKDQNIAVFTWYGCSIESSGGESGMYIADTTPMVAYVNT 87
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BLAST of mRNA_H-akashiwo_Contig1.106.1 vs. uniprot
Match: A0A4Y7QCM0_9AGAM (mRNA cleavage and polyadenylation factor CLP1 n=1 Tax=Rickenella mellea TaxID=50990 RepID=A0A4Y7QCM0_9AGAM)

HSP 1 Score: 84.0 bits (206), Expect = 1.570e-16
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:   97 DTKEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRF-TATKVAVFTWEGATLATAGEALVAYASEETPMEAYVN 348
            D+KEWIL PE+E RFE+D    + V L  G AE+FG E+A+ + Y F +  K AVFTW+G T+   G+  V Y S+ETPM+ Y+N
Sbjct:    8 DSKEWILDPETEYRFELDQGTTLAVKLTRGHAEIFGAELAEGKTYLFGSECKAAVFTWQGCTIQVTGQPSVEYVSDETPMDPYIN 92
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BLAST of mRNA_H-akashiwo_Contig1.106.1 vs. uniprot
Match: A0A137P8Y2_CONC2 (mRNA cleavage and polyadenylation factor CLP1 n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P8Y2_CONC2)

HSP 1 Score: 83.6 bits (205), Expect = 1.900e-16
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:   88 NMEDTKEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRFTATKVAVFTWEGATLATAGEALVAYASEETPMEAYVN 348
            N  +T+ W L PE ELR E D+E + T+ L +G AE+FG+E+  N EY+F   K+A+FTWEG +L   G   VAY ++ETPM  Y+N
Sbjct:    3 NPSNTQSWDLTPEQELRVEFDSE-VATLKLTKGTAEIFGIELGLNIEYKFQLDKLAIFTWEGCSLEIVGNVGVAYVADETPMSVYLN 88
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BLAST of mRNA_H-akashiwo_Contig1.106.1 vs. uniprot
Match: A0A6P7V440_IXOSC (Protein CLP1 homolog n=16 Tax=Ixodidae TaxID=6939 RepID=A0A6P7V440_IXOSC)

HSP 1 Score: 83.2 bits (204), Expect = 2.530e-16
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:   70 MAEEKINMEDT-KEWILVPESELRFEVDAEKIMTVVLKEGKAEVFGVEMAKNREYRF-TATKVAVFTWEGATLATAGEALVAYASEETPMEAYVN 348
            M EEK   E+  +E+ + PESELRFEV+ ++ +TV LK G AE+FGVE+ KN+++ F +  K+AVFTW G TL   G+  VAY ++ETPM  Y N
Sbjct:    1 MTEEKEAKEEVAQEFRIDPESELRFEVEGKEKVTVELKSGLAEIFGVELVKNKKFVFGSGAKIAVFTWHGCTLELCGKTEVAYVAKETPMIFYAN 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XPS0_HETAK1.570e-55100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5KLD2_9PHAE1.610e-2054.12Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LR58_ECTSI2.850e-2052.94Protein CLP1 homolog n=1 Tax=Ectocarpus siliculosu... [more]
A0A023FX20_AMBPA5.940e-1850.53Putative mrna cleavage and polyadenylation factor ... [more]
A0A835YJV7_9STRA8.660e-1858.62Protein CLP1 homolog n=1 Tax=Tribonema minus TaxID... [more]
UPI001455D1C31.520e-1753.41polyribonucleotide 5'-hydroxyl-kinase Clp1-like n=... [more]
A0A482SJV1_9ARCH5.180e-1747.13CLP1_N domain-containing protein n=1 Tax=archaeon ... [more]
A0A4Y7QCM0_9AGAM1.570e-1649.41mRNA cleavage and polyadenylation factor CLP1 n=1 ... [more]
A0A137P8Y2_CONC21.900e-1648.28mRNA cleavage and polyadenylation factor CLP1 n=1 ... [more]
A0A6P7V440_IXOSC2.530e-1650.53Protein CLP1 homolog n=16 Tax=Ixodidae TaxID=6939 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:4492832..4493612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR58
Preferred nameCLP1
PFAMsCLP1_N,CLP1_P,Clp1
Model size354
Max annot lvl2759|Eukaryota
KEGG koko:K14399
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000214,GO:0000375,GO:0000377,GO:0000394,GO:0000398,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006388,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009117,GO:0009791,GO:0009892,GO:0009908,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016301,GO:0016310,GO:0016441,GO:0016458,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019205,GO:0019222,GO:0019438,GO:0019637,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021549,GO:0021695,GO:0021953,GO:0022008,GO:0022037,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030182,GO:0030423,GO:0030554,GO:0030902,GO:0031047,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035087,GO:0035194,GO:0035639,GO:0036094,GO:0040029,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046939,GO:0048367,GO:0048513,GO:0048519,GO:0048608,GO:0048699,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0051731,GO:0051732,GO:0051733,GO:0051734,GO:0051736,GO:0055086,GO:0060255,GO:0060322,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070922,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090567,GO:0097159,GO:0097367,GO:0097659,GO:0099402,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1902555,GO:1905348
Exons3
Evalue4.67e-21
EggNOG OGsCOG5623@1|root,KOG2749@2759|Eukaryota
EC2.7.1.78
DescriptionmRNA 3'-end processing
Cds size351
COG categoryA
BRITEko00000,ko00001,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387035.8819366-CDS-H-akashiwo_Contig1:4492831..44930051681387035.8819366-CDS-H-akashiwo_Contig1:4492831..4493005Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 4492832..4493005 +
1681387035.8994489-CDS-H-akashiwo_Contig1:4493125..44932001681387035.8994489-CDS-H-akashiwo_Contig1:4493125..4493200Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 4493126..4493200 +
1681387035.9103456-CDS-H-akashiwo_Contig1:4493509..44936111681387035.9103456-CDS-H-akashiwo_Contig1:4493509..4493611Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 4493510..4493611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.106.1prot_H-akashiwo_Contig1.106.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 4492832..4493611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.106.1

>prot_H-akashiwo_Contig1.106.1 ID=prot_H-akashiwo_Contig1.106.1|Name=mRNA_H-akashiwo_Contig1.106.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=117bp
KTSQSQRKQRERPTTRPKKHSISMAEEKINMEDTKEWILVPESELRFEVD
AEKIMTVVLKEGKAEVFGVEMAKNREYRFTATKVAVFTWEGATLATAGEA
LVAYASEETPMEAYVNT
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mRNA from alignment at H-akashiwo_Contig1:4492832..4493612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.106.1 ID=mRNA_H-akashiwo_Contig1.106.1|Name=mRNA_H-akashiwo_Contig1.106.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=781bp|location=Sequence derived from alignment at H-akashiwo_Contig1:4492832..4493612+ (Heterosigma akashiwo CCMP452)
AAAACAAGCCAAAGCCAACGAAAGCAAAGGGAAAGGCCTACTACTCGACC
TAAAAAACACTCGATCTCGATGGCGGAAGAAAAAATTAATATGGAGGATA
CGAAGGAATGGATTCTTGTTCCTGAGTCAGAGCTACGGTTTGAGGTAGAT
GCCGAAAAGATCATGACTGTTGTGGTAAGTGAACAAAAAACTCCATCGCA
AATTTTGCTGGCCCATTGCCTCTTTGATCTTCGAACTCTTTTGAATGGCC
CGCAGCTTGTCAGAAAAAATCACTAAACCCTTGCTTTTTCCCAGCTGAAA
GAGGGCAAGGCTGAAGTATTTGGGGTGGAAATGGCAAAAAACAGAGAATA
CAGATTCACTGCGACAAAGGTACACACCTTGAACTACTGTAATGTAATAC
GATATGATGCACATGCATACACCCTCCCAACGTTTGTCACTCCTATTCAA
ACGACTACAGTCAATAGGAAAACGAGGTTTGGAGTTCAGTTCCTCTCCTT
TCCGTTCAGAAGCGCCCGACTCGAAACGCCCATCCTCCATTCAGTAGAAC
TGCATCCCCCATCACCGACGATCCAAAGCCCCCCCGCTTTGCCAGATCTC
CCCCCACCCCCGCGCCCCGGGGCTGCCCACCCCTGTGCCCTGGGGCGGCC
CGGCCCGGCTCGGCCCTGCCCGGCCCAGGTGGCTGTGTTCACCTGGGAGG
GCGCGACGCTGGCCACGGCCGGCGAGGCGCTGGTGGCGTACGCCTCCGAG
GAGACGCCCATGGAGGCCTACGTGAACACCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:4492832..4493612+

>mRNA_H-akashiwo_Contig1.106.1 ID=mRNA_H-akashiwo_Contig1.106.1|Name=mRNA_H-akashiwo_Contig1.106.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig1:4492832..4493612+ (Heterosigma akashiwo CCMP452)
AAAACAAGCCAAAGCCAACGAAAGCAAAGGGAAAGGCCTACTACTCGACC
TAAAAAACACTCGATCTCGATGGCGGAAGAAAAAATTAATATGGAGGATA
CGAAGGAATGGATTCTTGTTCCTGAGTCAGAGCTACGGTTTGAGGTAGAT
GCCGAAAAGATCATGACTGTTGTGCTGAAAGAGGGCAAGGCTGAAGTATT
TGGGGTGGAAATGGCAAAAAACAGAGAATACAGATTCACTGCGACAAAGG
TGGCTGTGTTCACCTGGGAGGGCGCGACGCTGGCCACGGCCGGCGAGGCG
CTGGTGGCGTACGCCTCCGAGGAGACGCCCATGGAGGCCTACGTGAACAC
C
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