mRNA_H-fluviatilis_contig101040.279.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig101040.279.1
Unique NamemRNA_H-fluviatilis_contig101040.279.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig101040.279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig101040contigH-fluviatilis_contig101040:267..686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size316
Cds size288
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig101040.279.1prot_H-fluviatilis_contig101040.279.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig101040 267..659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929028.900552-CDS-H-fluviatilis_contig101040:266..4521622929028.900552-CDS-H-fluviatilis_contig101040:266..452Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101040 267..452 +
1691135156.1115358-CDS-H-fluviatilis_contig101040:266..4521691135156.1115358-CDS-H-fluviatilis_contig101040:266..452Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101040 267..452 +
1622929028.9149868-CDS-H-fluviatilis_contig101040:506..5871622929028.9149868-CDS-H-fluviatilis_contig101040:506..587Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101040 507..587 +
1691135156.1249073-CDS-H-fluviatilis_contig101040:506..5871691135156.1249073-CDS-H-fluviatilis_contig101040:506..587Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101040 507..587 +
1622929028.9235325-CDS-H-fluviatilis_contig101040:638..6591622929028.9235325-CDS-H-fluviatilis_contig101040:638..659Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101040 639..659 +
1691135156.1371489-CDS-H-fluviatilis_contig101040:638..6591691135156.1371489-CDS-H-fluviatilis_contig101040:638..659Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101040 639..659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929028.9334428-UTR-H-fluviatilis_contig101040:659..6861622929028.9334428-UTR-H-fluviatilis_contig101040:659..686Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101040 660..686 +
1691135156.1466007-UTR-H-fluviatilis_contig101040:659..6861691135156.1466007-UTR-H-fluviatilis_contig101040:659..686Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101040 660..686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig101040.279.1

>prot_H-fluviatilis_contig101040.279.1 ID=prot_H-fluviatilis_contig101040.279.1|Name=mRNA_H-fluviatilis_contig101040.279.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=96bp
AVREQSREAEVTPCEPEVKSWAELYDALDQLGSSSVNTFLRRLYTLCPRD
PTLRDLIDDPPQSLSSRKLVLTRWLLKQEETMSFDSVELAWFGPH*
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mRNA from alignment at H-fluviatilis_contig101040:267..686+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig101040.279.1 ID=mRNA_H-fluviatilis_contig101040.279.1|Name=mRNA_H-fluviatilis_contig101040.279.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=420bp|location=Sequence derived from alignment at H-fluviatilis_contig101040:267..686+ (Heribaudiella fluviatilis SAG_13_90)
GCTGTGCGTGAACAATCACGCGAGGCAGAGGTGACACCGTGCGAGCCAGA
GGTGAAGTCCTGGGCAGAGCTGTACGATGCGCTCGACCAGCTGGGATCGA
GCAGTGTCAATACATTTCTGCGTCGGCTGTACACGTTGTGCCCTCGCGAC
CCCACTCTACGCGACCTCATCGATGATCCACCACAGGTCGATTTTCAGCT
TAGAACGTGATCGAAACTTTTGTGCGCTGTGCATGTGCAGAGTCTGAGCT
CCCGGAAACTAGTGCTGACACGATGGCTTCTGAAACAGGAAGAGACCATG
TCCTTCGATTCTGTGGAGCTGGTATGCAACGATCGCGTGGTGGCTTGTGT
AAGCGCACGTTGGTTTTCGTAGGCATGGTTTGGGCCACATTGAACTTGAC
GCGCTGCTTGTCAATGGAAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig101040:267..686+

>mRNA_H-fluviatilis_contig101040.279.1 ID=mRNA_H-fluviatilis_contig101040.279.1|Name=mRNA_H-fluviatilis_contig101040.279.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=576bp|location=Sequence derived from alignment at H-fluviatilis_contig101040:267..686+ (Heribaudiella fluviatilis SAG_13_90)
GCTGTGCGTGAACAATCACGCGAGGCAGAGGTGACACCGTGCGAGCCAGA
GGTGAAGTCCTGGGCAGAGCTGTACGATGCGCTCGACCAGCTGGGATCGA
GCAGTGTCAATACATTTCTGCGTCGGCTGTACACGTTGTGCCCTCGCGAC
CCCACTCTACGCGACCTCATCGATGATCCACCACAGGCTGTGCGTGAACA
ATCACGCGAGGCAGAGGTGACACCGTGCGAGCCAGAGGTGAAGTCCTGGG
CAGAGCTGTACGATGCGCTCGACCAGCTGGGATCGAGCAGTGTCAATACA
TTTCTGCGTCGGCTGTACACGTTGTGCCCTCGCGACCCCACTCTACGCGA
CCTCATCGATGATCCACCACAGAGTCTGAGCTCCCGGAAACTAGTGCTGA
CACGATGGCTTCTGAAACAGGAAGAGACCATGTCCTTCGATTCTGTGGAG
CTGAGTCTGAGCTCCCGGAAACTAGTGCTGACACGATGGCTTCTGAAACA
GGAAGAGACCATGTCCTTCGATTCTGTGGAGCTGGCATGGTTTGGGCCAC
ATTGAGCATGGTTTGGGCCACATTGA
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