mRNA_H-fluviatilis_contig101037.277.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig101037.277.1
Unique NamemRNA_H-fluviatilis_contig101037.277.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig101037.277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig101037contigH-fluviatilis_contig101037:446..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig101037.277.1prot_H-fluviatilis_contig101037.277.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig101037 446..753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929028.8137238-CDS-H-fluviatilis_contig101037:445..7021622929028.8137238-CDS-H-fluviatilis_contig101037:445..702Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101037 446..702 -
1691135156.075024-CDS-H-fluviatilis_contig101037:445..7021691135156.075024-CDS-H-fluviatilis_contig101037:445..702Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101037 446..702 -
1622929028.8238037-CDS-H-fluviatilis_contig101037:731..7531622929028.8238037-CDS-H-fluviatilis_contig101037:731..753Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101037 732..753 -
1691135156.082867-CDS-H-fluviatilis_contig101037:731..7531691135156.082867-CDS-H-fluviatilis_contig101037:731..753Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101037 732..753 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929028.8340583-UTR-H-fluviatilis_contig101037:753..7631622929028.8340583-UTR-H-fluviatilis_contig101037:753..763Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101037 754..763 -
1691135156.0914953-UTR-H-fluviatilis_contig101037:753..7631691135156.0914953-UTR-H-fluviatilis_contig101037:753..763Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101037 754..763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig101037.277.1

>prot_H-fluviatilis_contig101037.277.1 ID=prot_H-fluviatilis_contig101037.277.1|Name=mRNA_H-fluviatilis_contig101037.277.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=93bp
MHPTRPSVSPRYFGGPRGSEPYRIAALARTGYCCRLPTRWYPFTLAFLLA
VAVPDDSTSHAPVGQSVQSAHSKSWPPANQQRLSPSSATISFS
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mRNA from alignment at H-fluviatilis_contig101037:446..763-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig101037.277.1 ID=mRNA_H-fluviatilis_contig101037.277.1|Name=mRNA_H-fluviatilis_contig101037.277.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=318bp|location=Sequence derived from alignment at H-fluviatilis_contig101037:446..763- (Heribaudiella fluviatilis SAG_13_90)
TTTGCGTTCAATGCACCCAACGAGACCCTCAGGTAAATGCGGTGTTGTGC
ACTCCTACCAGTCTCGCCCCGATATTTCGGCGGTCCTCGCGGCTCTGAAC
CGTATCGAATTGCCGCGCTTGCGCGGACTGGGTATTGCTGCAGGCTCCCC
ACGCGGTGGTATCCATTCACACTCGCTTTCCTTCTCGCGGTCGCAGTCCC
TGATGACTCCACATCACATGCCCCAGTCGGGCAATCAGTCCAATCAGCCC
ACTCCAAGTCATGGCCACCAGCCAATCAACAAAGGCTTTCTCCATCCTCA
GCCACAATCTCATTCTCG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig101037:446..763-

>mRNA_H-fluviatilis_contig101037.277.1 ID=mRNA_H-fluviatilis_contig101037.277.1|Name=mRNA_H-fluviatilis_contig101037.277.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=558bp|location=Sequence derived from alignment at H-fluviatilis_contig101037:446..763- (Heribaudiella fluviatilis SAG_13_90)
ATGCACCCAACGAGACCCTCAGATGCACCCAACGAGACCCTCAGTCTCGC
CCCGATATTTCGGCGGTCCTCGCGGCTCTGAACCGTATCGAATTGCCGCG
CTTGCGCGGACTGGGTATTGCTGCAGGCTCCCCACGCGGTGGTATCCATT
CACACTCGCTTTCCTTCTCGCGGTCGCAGTCCCTGATGACTCCACATCAC
ATGCCCCAGTCGGGCAATCAGTCCAATCAGCCCACTCCAAGTCATGGCCA
CCAGCCAATCAACAAAGGCTTTCTCCATCCTCAGCCACAATCTCATTCTC
GTCTCGCCCCGATATTTCGGCGGTCCTCGCGGCTCTGAACCGTATCGAAT
TGCCGCGCTTGCGCGGACTGGGTATTGCTGCAGGCTCCCCACGCGGTGGT
ATCCATTCACACTCGCTTTCCTTCTCGCGGTCGCAGTCCCTGATGACTCC
ACATCACATGCCCCAGTCGGGCAATCAGTCCAATCAGCCCACTCCAAGTC
ATGGCCACCAGCCAATCAACAAAGGCTTTCTCCATCCTCAGCCACAATCT
CATTCTCG
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