mRNA_H-fluviatilis_contig10102.276.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10102.276.1
Unique NamemRNA_H-fluviatilis_contig10102.276.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A6H5KFT3_9PHAE (PUA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT3_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 6.330e-125
Identity = 197/271 (72.69%), Postives = 220/271 (81.18%), Query Frame = 1
Query:    1 KKLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKG-------LLVAATGTDSGAKQSAAKSN------GGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774
            K ++V +GKARLFWDGNPLVYGGAV RVEGDPAAG+VVDV+DS GKFIAW GVYNPDSMYRVR+LA+EGEA+   RDVGAVV+ERL TARDARRAIG+P+ +T+TYRLVNGEGDRLSGLVVDVFA VVGVSSSA WVEA+R EIEGAL E FGADA EI+WRRSDGRLQQDGWKG       ++   TG DS A + A  S       GGE  E  RLR   P+T+VRE GLE+EV PQFGQKTG  FYCDQRESR+AVR LS+GKNVLDM
Sbjct:   73 KAVVVARGKARLFWDGNPLVYGGAVSRVEGDPAAGDVVDVIDSSGKFIAW-GVYNPDSMYRVRVLAREGEAVCHDRDVGAVVKERLLTARDARRAIGLPNAKTDTYRLVNGEGDRLSGLVVDVFAGVVGVSSSAVWVEAFRPEIEGALGEVFGADATEIIWRRSDGRLQQDGWKGNNLSSPGVVAETTGADSEAARGAGSSEEVGAVGGGETGEK-RLRSDAPSTVVREHGLEFEVRPQFGQKTG--FYCDQRESRQAVRELSQGKNVLDM 339          
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: D7FS18_ECTSI (PUA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS18_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 1.630e-112
Identity = 175/242 (72.31%), Postives = 197/242 (81.40%), Query Frame = 1
Query:    1 KKLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKG--------LLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGER 702
            K ++V +GKARLFWDGNPLVYGGAV RVEGDPAAG+VVDV+DS GKFIAW GVYNPDSMYRVRILA+EGEA+   RDVGAVV+ERL TARDARRAIG+P+ +T+TYRLVNGEGDRLSGLVVDVFA VVGVSSSA WVEA+R EIEGAL E FGADA EI+WRRSDGRLQQDGWKG         +   TG D  A ++A  S G  +A   RLR   P+T+VRE GLE+EV PQFGQKTGE+
Sbjct:   73 KAVVVARGKARLFWDGNPLVYGGAVSRVEGDPAAGDVVDVIDSSGKFIAW-GVYNPDSMYRVRILAREGEAVCHDRDVGAVVKERLLTARDARRAIGLPNAKTDTYRLVNGEGDRLSGLVVDVFAGVVGVSSSAVWVEAFRPEIEGALGEVFGADATEIIWRRSDGRLQQDGWKGNNQSSPGAAVAETTGADGKAARAAGSSEGVGVAGEKRLRSDAPSTVVREHGLEFEVRPQFGQKTGEK 313          
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A836CPI8_9STRA (Ribosomal RNA large subunit methyltransferase I-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPI8_9STRA)

HSP 1 Score: 251 bits (640), Expect = 5.460e-78
Identity = 146/255 (57.25%), Postives = 169/255 (66.27%), Query Frame = 1
Query:   13 VFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILA-KEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774
            + KGKARLF+DGNPLV+GGAV  V G PA  +VV+V    GK I W GV+N +SM+RVRILA    E L   RD+G VV  R+RTAR AR AIG+PS  T+ YR VNGEGDRLSGLVVDVF   VGVSSSA WVE++R  +E AL+  FG D   IVWR SDGRLQQDGW              ++ AA+  G E A      D  P   + ELGL+Y V P  GQKTG  FYCDQRE+REAVR L+ GK VLDM
Sbjct:   28 IAKGKARLFYDGNPLVFGGAVAAVTGRPAQCDVVEVKSDVGKLIGW-GVFNAESMFRVRILAFASEEPLGASRDIGCVVEARVRTARAARAAIGLPSAATDAYRCVNGEGDRLSGLVVDVFGTTVGVSSSALWVESHRPAVEAALRRAFG-DEYAIVWRLSDGRLQQDGW-------------GEEEAAEEAGAERA------DVPPPLQITELGLKYYVQPHIGQKTG--FYCDQRENREAVRRLAAGKTVLDM 259          
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A7X7L9M1_9BACT (Class I SAM-dependent rRNA methyltransferase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7X7L9M1_9BACT)

HSP 1 Score: 185 bits (470), Expect = 6.340e-53
Identity = 111/257 (43.19%), Postives = 154/257 (59.92%), Query Frame = 1
Query:    4 KLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774
            ++ + KGKA+ FW G+PLV+ GA+ +V+G P AGE VDV+D +G  I W GV+NP S YRVR+L    E   D   +  +V+ RL  A   RR++G+PS++TN YRL N EGDRLSGL +D F  V+ V+SSA WVE YR+EIE A+++        IVWR+ +  L+QDG   ++                     I+E            VRELG+ Y+V    GQKTG  FY DQRE+R  +R+L+ G++VLD+
Sbjct:    9 RVSIRKGKAKPFWYGHPLVFSGAIQKVDGSPEAGECVDVLDQNGNRIGW-GVFNPHSDYRVRLLCLAEENAPDYA-IQDLVKRRLEEAVLVRRSLGLPSDETNAYRLFNSEGDRLSGLTIDCFGDVLVVASSALWVEKYRAEIEAAMRDVIKPRV--IVWRQVNAPLRQDGVSEIIQT-------------------ISE--------ETVTVRELGVNYQVALGAGQKTG--FYFDQRENRALIRSLAHGRSVLDV 232          
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: F0Y0Q6_AURAN (PUA domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0Q6_AURAN)

HSP 1 Score: 184 bits (467), Expect = 1.730e-52
Identity = 110/256 (42.97%), Postives = 145/256 (56.64%), Query Frame = 1
Query:   19 KGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEF----GADADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774
            +GK++LF  GNPL++ GAV    GDP  G+VVDVVD   + + W G YNPDSMYRVR+L + G A  +   VGA V+  L  A   RRA+ +P   T+ +R VN EGD LSGL VD F  V+    SA W+E+ R+ +E AL+E +    G     ++WRR++ RL+QDGW G                      E+A G R          +E GL YEV   FGQKTG  FYCDQR++R  +  L  GK+VLD+
Sbjct:    5 RGKSKLFRKGNPLIFAGAVSSTAGDPQRGDVVDVVDGANQNVGW-GTYNPDSMYRVRLLGRGGAAETNEARVGAAVKALLGAAASRRRALDLPRADTDVFRFVNSEGDGLSGLTVDAFGDVLVCQISAVWLESRRAVVEAALREAYEGLTGISDARVLWRRAEARLRQDGWDG-------------------EADEMASGDRF-------AAKEGGLAYEV-DVFGQKTG--FYCDQRDNRAFLGPLCAGKSVLDL 230          
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A4D9CY43_9STRA (PUA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY43_9STRA)

HSP 1 Score: 186 bits (471), Expect = 5.520e-52
Identity = 114/262 (43.51%), Postives = 156/262 (59.54%), Query Frame = 1
Query:    7 LIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRIL---AKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGW---KGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774
            +++  GKARLF +GNPLVYG AV  V G  A G+ V+VVD  G  I   G YN  SMYRVR+L    ++GEAL     +  +V  R+ TA   R+A+G+P+ +T  +RLVNGEGD+LSGL  DVF +V  VSSS+ W E ++  I   L+   G      VWRRS+ RL+QDG+   +  L  A    + A++  A                      +E GL+Y+VYP+ GQKTG  FYCDQR++R+ +++LSRGK VLD+
Sbjct:  101 VVLRAGKARLFLEGNPLVYGEAVHEVVGHVADGDFVEVVDHRGNLIG-KGCYNSQSMYRVRLLWHAREKGEALY-ASSLEDIVARRVSTAWTTRQALGLPNAETTCFRLVNGEGDKLSGLAADVFDKVCVVSSSSLWCERHKDFIIQGLEASLGPAGISTVWRRSEARLKQDGFVDPEEALRPAIDVKAEARKEGAY------------------VWAKEAGLKYKVYPELGQKTG--FYCDQRQNRQMIQSLSRGKRVLDL 340          
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: R1EX94_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX94_EMIHU)

HSP 1 Score: 177 bits (449), Expect = 8.670e-50
Identity = 116/253 (45.85%), Postives = 149/253 (58.89%), Query Frame = 1
Query:   25 KARLFWDG-NPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRIL--AKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774
            KAR+F +G +PLV+ GA+ R E +   GE VDV+D  G+ I W GV+NP S+YRVR+L  A E + L + R +  +VR RL+ A   R A  +PSE T  YRLVN EGDRLSGL VDVF       SSA W+E  R  +E AL E  G +   +VWRRSDGRL+ DGW      A+GT  G                GR   A P T++ E GL+Y V P  GQK+G  FYCDQR++R  +  L  G+ +LD+
Sbjct:    1 KARMFKNGGHPLVFEGAIKRTE-NVQVGEAVDVLDGAGELIGW-GVWNPHSLYRVRMLVPAIERDQL-EHRSISEIVRRRLQAAASRRAACCLPSESTTAYRLVNSEGDRLSGLTVDVFGSTAVAISSALWLELRREAVEVALLELAGIET--VVWRRSDGRLRTDGWN--PPEASGTAEGEAD-------------GRPAPAPPVTVL-ENGLKYLVAPVLGQKSG--FYCDQRDNRAMLAELCAGRRLLDL 230          
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A7S3GZD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZD2_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.710e-48
Identity = 102/256 (39.84%), Postives = 151/256 (58.98%), Query Frame = 1
Query:    4 KLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLD 771
            ++++ KGK R+F  G+PLV+ GA+  + G P  G+ V V D  G  +   G+YNP SMYRVR+++ + + L +   + A+++ R+  A  +R A+ +P   T+ YRL+N EGDRLSG++VDV    V V SSA W E  +  IE  L+         I+WRR+  RL QDG + L     GTDS     +A  NG    +G    +   + +V E G++Y++     QKTG  FYCDQRE+R+ +R+LS+GK VLD
Sbjct:   47 QVLIAKGKERIFEQGDPLVFNGAISNIIGKPVLGDEVLVKDFQGNLLG-RGLYNPHSMYRVRVISSKDDKLINA-PLAALIKGRIEQAVQSRAAMLLPRSDTDVYRLINSEGDRLSGVIVDVIGSTVVVQSSALWAEIQKESIEAGLRSVLQFKDKTILWRRALSRLNQDGLQEL-----GTDS---TISASMNGDS--DGSATDNVAESEVVTENGIKYKLCAATDQKTG--FYCDQRENRQLIRSLSQGKTVLD 288          
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A0M0KAW9_9EUKA (Ribosomal RNA large subunit methyltransferase i-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0KAW9_9EUKA)

HSP 1 Score: 174 bits (442), Expect = 5.170e-48
Identity = 112/262 (42.75%), Postives = 143/262 (54.58%), Query Frame = 1
Query:   22 GKARLFWD-GNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGE-ALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKGLLV---------AATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774
            GKARLF + G+PLV+ GAV +V GDP  G +VDVVD     + W GV+NP SMYRVR+LA   E AL   RD+  ++  RL  A   R A+ +PS +T  YRL+N EGDRLSGL VDVF       +SA W+E     +   L+   G    E+VWRRSDGRLQQDGW+             + T     A  SA                     ++ E G++Y V P  GQK+G  FYCDQR++R  +  L R K VLD+
Sbjct:   40 GKARLFKNAGHPLVFSGAVDKVLGDPEPGAIVDVVDGKDGLVGW-GVFNPHSMYRVRLLATPEEPALIAHRDLRKLISHRLEAALKLRAALSLPSPETTAYRLINSEGDRLSGLTVDVFGGTAVAVTSAMWLEQRSDMVVECLRALPGI--TEVVWRRSDGRLQQDGWEVPNAKVEEVEEHQSLTDDSPTAHASAPXXXXXXXXXXXXXXPPPLPVLIYESGVKYLVAPVLGQKSG--FYCDQRDNRRQLAELCRDKRVLDL 296          
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A8J2SGB3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGB3_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.910e-46
Identity = 111/261 (42.53%), Postives = 145/261 (55.56%), Query Frame = 1
Query:    1 KKLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGA---DADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774
            K + + +GKARLF DGNPLVYGGAV R  GD + G+ V+VVD  G  I W G YNPDSMYRVR+L    +      D    VR  + TA + R A+ +PSE T+ +RL+N EGD LSGL VD +   +  S SA W EA R EI  AL+E +     +  +I+WR +  RL+ +G +  + A    D+                     DA+ AT   E  L YEV   +GQKTG  FYCDQR++R  +  L  GK VLD+
Sbjct:   32 KSVTIKRGKARLFRDGNPLVYGGAVERTSGDVSRGDAVEVVDGAGNNIGW-GFYNPDSMYRVRLLPGPMQD-----DPMQAVRSLIETACERRSALNLPSEATSAFRLINSEGDGLSGLTVDAYGAHLVCSISAAWAEARRVEITAALEESYSTLIGEKPQIIWRPAVARLRSEGLE--IEADDDADN---------------------DAVEAT---ESSLVYEV-DVWGQKTG--FYCDQRDNRNFLAPLCAGKRVLDL 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFT3_9PHAE6.330e-12572.69PUA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FS18_ECTSI1.630e-11272.31PUA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CPI8_9STRA5.460e-7857.25Ribosomal RNA large subunit methyltransferase I-li... [more]
A0A7X7L9M1_9BACT6.340e-5343.19Class I SAM-dependent rRNA methyltransferase n=1 T... [more]
F0Y0Q6_AURAN1.730e-5242.97PUA domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A4D9CY43_9STRA5.520e-5243.51PUA domain-containing protein n=2 Tax=Monodopsidac... [more]
R1EX94_EMIHU8.670e-5045.85Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]
A0A7S3GZD2_9STRA3.710e-4839.84Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A0M0KAW9_9EUKA5.170e-4842.75Ribosomal RNA large subunit methyltransferase i-li... [more]
A0A8J2SGB3_9STRA2.910e-4642.53Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10102contigH-fluviatilis_contig10102:5590..8142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.5
Seed ortholog evalue2.2e-89
Seed eggNOG ortholog2880.D7FS18
EggNOG free text desc.S-adenosylmethionine-dependent methyltransferase
EggNOG OGs2QS1I@2759,COG1092@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size777
Cds size777
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10102.276.1prot_H-fluviatilis_contig10102.276.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10102 5590..8142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929028.7305894-CDS-H-fluviatilis_contig10102:5589..56301622929028.7305894-CDS-H-fluviatilis_contig10102:5589..5630Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 5590..5630 +
1691135156.0135221-CDS-H-fluviatilis_contig10102:5589..56301691135156.0135221-CDS-H-fluviatilis_contig10102:5589..5630Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 5590..5630 +
1622929028.741692-CDS-H-fluviatilis_contig10102:6266..63761622929028.741692-CDS-H-fluviatilis_contig10102:6266..6376Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 6267..6376 +
1691135156.028858-CDS-H-fluviatilis_contig10102:6266..63761691135156.028858-CDS-H-fluviatilis_contig10102:6266..6376Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 6267..6376 +
1622929028.750317-CDS-H-fluviatilis_contig10102:6569..67381622929028.750317-CDS-H-fluviatilis_contig10102:6569..6738Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 6570..6738 +
1691135156.036346-CDS-H-fluviatilis_contig10102:6569..67381691135156.036346-CDS-H-fluviatilis_contig10102:6569..6738Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 6570..6738 +
1622929028.764283-CDS-H-fluviatilis_contig10102:7206..74711622929028.764283-CDS-H-fluviatilis_contig10102:7206..7471Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 7207..7471 +
1691135156.0436633-CDS-H-fluviatilis_contig10102:7206..74711691135156.0436633-CDS-H-fluviatilis_contig10102:7206..7471Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 7207..7471 +
1622929028.772515-CDS-H-fluviatilis_contig10102:7606..77211622929028.772515-CDS-H-fluviatilis_contig10102:7606..7721Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 7607..7721 +
1691135156.0524006-CDS-H-fluviatilis_contig10102:7606..77211691135156.0524006-CDS-H-fluviatilis_contig10102:7606..7721Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 7607..7721 +
1622929028.782347-CDS-H-fluviatilis_contig10102:8065..81421622929028.782347-CDS-H-fluviatilis_contig10102:8065..8142Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 8066..8142 +
1691135156.0639567-CDS-H-fluviatilis_contig10102:8065..81421691135156.0639567-CDS-H-fluviatilis_contig10102:8065..8142Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10102 8066..8142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10102.276.1

>prot_H-fluviatilis_contig10102.276.1 ID=prot_H-fluviatilis_contig10102.276.1|Name=mRNA_H-fluviatilis_contig10102.276.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=259bp
KKLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAW
AGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPS
EQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQE
EFGADADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIA
EGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLS
RGKNVLDM*
back to top

mRNA from alignment at H-fluviatilis_contig10102:5590..8142+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10102.276.1 ID=mRNA_H-fluviatilis_contig10102.276.1|Name=mRNA_H-fluviatilis_contig10102.276.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=2553bp|location=Sequence derived from alignment at H-fluviatilis_contig10102:5590..8142+ (Heribaudiella fluviatilis SAG_13_90)
AAGAAATTAATCGTCTTCAAGGGGAAAGCCCGGCTCTTCTGGTGGGACGA CGGTAAATTTTAATAGCAGTTGATCACGCCGCGGTAGTCTACGGTTGACA TTGTTGACGTCCTACTTGAGGAGATAATAGTCGCAATCGCTGACGATTGG CTTATTTCCACTTGGTGCTTACGGAAGCAATAGCAGTGTTGCTCTCTCAA GGAAACGTGCTCGATTTGGTGTTTCCAACACGCTATTCAATTGTTCACCT AACTGGATCCTATCTTAGACTCTACACGTCAACGACTCTACAGAAAGTGT GCCACGTTCATGTTTACCAGACGGACCGTTTCTTCCCCTCATCGTGGGTA CGAATTGCCAGTACACAACTGGCGGTCTGTCGGCTGCTGTTGAGGGCTCC GTATGGCATCACGTCTGGCTCATGCCATCCCCACTATCACATTGCGAGTA TCTTCATGCTCCTGTGTGCATTCAGTGTCGAGCTGAGTCGGCGACACCAA CGCCACGAACTGCAAGACAGCAATACCATCGTTTGAAATTCACGTCGTCC ATGCACTGTACACTACACAAGTGCAAGTTTCAAGGCACACGGAGCTCGTA AGCTTCGCACTTTCCATGCCCAACCGCTTGACTCTGACTCCCGACCGCTT TGGTTTAAACAATCGTCGCGTTCTTAGGGATGGTAACCCGTTGGTGTACG GTGGCGCTGTTGGGAGAGTGGAAGGAGATCCAGCTGCCGGTGAAGTTGTC GACGTCGTGGACTCGGATGGAAAGTTCATTGCCTGGGGTAAGGAACGTGA GCATGGCATCGTTTTTTTATGTCGCATGGCAGCATACTACAGGTAGTCCT TCCTGACTTGTCTACGCCCCGGGTGCTGGATCGAACCGAATGGCCACAAA AAGGCACCGTTTTGCGATCTCTCTCATCCCTCATAGACCCACTTTGAGTG AAGCCCCATGTCAAACGTGAACGTGTCGAGCAGGGGTCTACAATCCTGAT TCCATGTATCGGGTGCGAATACTCGCAAAGGAGGGCGAGGCTTTAGCTGA CTGCCGAGATGTCGGCGCGGTGGTACGGGAACGACTAAGGACCGCCCGAG ATGCCCGGCGAGCCATCGGTATTCCAAGCGAGCAGACTAATACCTACCGG TACGAGCAAAGCACGATTCTTGCGTTGGCATTTGTGGGATTGACACTTTG CTGCGCTTCACACGCATGGATACTAGTACGCCCGACGTGGACGCTACCTC TGCCTGTACTACTACTGCCAGAGCTGTCGTTGCATCTCAAACCCACGCCG AAGTGTTGTGGGTCGTCTCATGCAGTCCTCTGTCTTATGTATTATTTGCT CCGTCAGAGCTATCGCAGCACCGCTCCTTTGCGATGAACTGAGCGCCTCG CAAAAGGTGCACCCCATGACGGACCCGGAAATCTCAGTACGCGTACAGTG TGCACGTTTCGATGCAGTAGTGTACGTAACCATGTAGCATTGCACAATAC CGCGTGATGTTCACCCGAACCATAGCGTCTCGCTTTGCCCGATTCAGTTC GCCGCCACAATGGCGTACGGTTATCGTCATCGGTTACCACTCTAATGCAA TAAGTGGTAAAAAACAGGCTGGTGAATGGTGAGGGGGATCGACTCAGCGG CCTAGTTGTCGACGTCTTCGCGCGCGTTGTCGGTGTTTCCTCTTCGGCCA CCTGGGTGGAGGCGTACCGATCAGAAATAGAAGGAGCGCTGCAGGAAGAG TTCGGCGCGGACGCCGACGAGATAGTGTGGCGACGCAGCGACGGCCGACT TCAGCAAGACGGATGGAAAGGGCTACTTGTGGCGGCTACCGGGACAGACT CTGGAGCGAAACAATCTGCGGCAAAATCGAACGTCCGTGGTGACCTGAAA TTGGATGCCGAAGAGCTGGATGGTGTACCTGACGTTGTTCGAGGAGCAGC GTCCGCCGGAAAAGACAACGAGAACAATAATAACGGAGAGCATATTTTGG CGGCAGAGCAGGGCGAGGGTGGGGAAATAGCGGAGGGCGGCCGCTTGCGG GACGCGCTACCGGCTACTATTGTTAGGGAGTTGGGGCTGGAGTACGAAGT GTACCCACAATTTGGACAGAAGACAGGCGAGCGTAGAGAGCAGTACGGGA GAAAATGGGACCCATTTAAGTCTCTACCATATTGAGGCTTCTGTTGGGCT AGGGGGGTGTTGAGGTTTGGTAGGTCACCGAGAAAGCTGTGCTGTGTGAT GCGGGCGCAACGGGGGGCGGGTTGTACCGCGCCATTCTTCCGCCCTAGGT GTCGTTGGGATTACCAGCCTTCGGTCTCTACAGTTCCCACACGATGTAGC GGCCCTTCGCACTTTGTAGCTATGGTCGGTACCGCATCACGCTCCCGATG GATGCTTGTTGACAAATGCGTTATCTTCATGCCGGCGCGTATTGTTTCTG CTTCTGTTTTTTCGGGGTCATGGCAGGGTTCTACTGCGACCAGAGAGAGA GCAGGGAGGCTGTTCGAAATCTCAGTCGCGGCAAAAATGTTCTCGACATG TAA
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig10102:5590..8142+

>mRNA_H-fluviatilis_contig10102.276.1 ID=mRNA_H-fluviatilis_contig10102.276.1|Name=mRNA_H-fluviatilis_contig10102.276.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1554bp|location=Sequence derived from alignment at H-fluviatilis_contig10102:5590..8142+ (Heribaudiella fluviatilis SAG_13_90)
AAGAAATTAATCGTCTTCAAGGGGAAAGCCCGGCTCTTCTGAAGAAATTA
ATCGTCTTCAAGGGGAAAGCCCGGCTCTTCTGGGATGGTAACCCGTTGGT
GTACGGTGGCGCTGTTGGGAGAGTGGAAGGAGATCCAGCTGCCGGTGAAG
TTGTCGACGTCGTGGACTCGGATGGAAAGTTCATTGCCTGGGGGATGGTA
ACCCGTTGGTGTACGGTGGCGCTGTTGGGAGAGTGGAAGGAGATCCAGCT
GCCGGTGAAGTTGTCGACGTCGTGGACTCGGATGGAAAGTTCATTGCCTG
GGCAGGGGTCTACAATCCTGATTCCATGTATCGGGTGCGAATACTCGCAA
AGGAGGGCGAGGCTTTAGCTGACTGCCGAGATGTCGGCGCGGTGGTACGG
GAACGACTAAGGACCGCCCGAGATGCCCGGCGAGCCATCGGTATTCCAAG
CGAGCAGACTAATACCTACCGCAGGGGTCTACAATCCTGATTCCATGTAT
CGGGTGCGAATACTCGCAAAGGAGGGCGAGGCTTTAGCTGACTGCCGAGA
TGTCGGCGCGGTGGTACGGGAACGACTAAGGACCGCCCGAGATGCCCGGC
GAGCCATCGGTATTCCAAGCGAGCAGACTAATACCTACCGGCTGGTGAAT
GGTGAGGGGGATCGACTCAGCGGCCTAGTTGTCGACGTCTTCGCGCGCGT
TGTCGGTGTTTCCTCTTCGGCCACCTGGGTGGAGGCGTACCGATCAGAAA
TAGAAGGAGCGCTGCAGGAAGAGTTCGGCGCGGACGCCGACGAGATAGTG
TGGCGACGCAGCGACGGCCGACTTCAGCAAGACGGATGGAAAGGGCTACT
TGTGGCGGCTACCGGGACAGACTCTGGAGCGAAACAATCTGCGGCAAAAT
CGAACGCTGGTGAATGGTGAGGGGGATCGACTCAGCGGCCTAGTTGTCGA
CGTCTTCGCGCGCGTTGTCGGTGTTTCCTCTTCGGCCACCTGGGTGGAGG
CGTACCGATCAGAAATAGAAGGAGCGCTGCAGGAAGAGTTCGGCGCGGAC
GCCGACGAGATAGTGTGGCGACGCAGCGACGGCCGACTTCAGCAAGACGG
ATGGAAAGGGCTACTTGTGGCGGCTACCGGGACAGACTCTGGAGCGAAAC
AATCTGCGGCAAAATCGAACGGTGGGGAAATAGCGGAGGGCGGCCGCTTG
CGGGACGCGCTACCGGCTACTATTGTTAGGGAGTTGGGGCTGGAGTACGA
AGTGTACCCACAATTTGGACAGAAGACAGGCGAGCGGTGGGGAAATAGCG
GAGGGCGGCCGCTTGCGGGACGCGCTACCGGCTACTATTGTTAGGGAGTT
GGGGCTGGAGTACGAAGTGTACCCACAATTTGGACAGAAGACAGGCGAGC
GGTTCTACTGCGACCAGAGAGAGAGCAGGGAGGCTGTTCGAAATCTCAGT
CGCGGCAAAAATGTTCTCGACATGTAAGGTTCTACTGCGACCAGAGAGAG
AGCAGGGAGGCTGTTCGAAATCTCAGTCGCGGCAAAAATGTTCTCGACAT
GTAA
back to top