mRNA_H-fluviatilis_contig100983.266.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100983.266.1
Unique NamemRNA_H-fluviatilis_contig100983.266.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig100983.266.1 vs. uniprot
Match: UPI000C03EA68 (MFS-type transporter SLC18B1-like isoform X3 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03EA68)

HSP 1 Score: 60.5 bits (145), Expect = 2.450e-8
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   16 VIGFTEAATGLGFLLGPTIGGVMYSNGGFQLPFIVSGSVMLSQLLLFFCIFAVDK 180
            V+G  E  TGLGF+LGP +GGV+YS GGF+LPFIV GS++LS L +   I   D+
Sbjct:   45 VMGAMETFTGLGFMLGPPLGGVLYSAGGFKLPFIVLGSLLLSILPVVILILPRDQ 99
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BLAST of mRNA_H-fluviatilis_contig100983.266.1 vs. uniprot
Match: UPI0010FCCEBC (MFS-type transporter SLC18B1-like isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI0010FCCEBC)

HSP 1 Score: 60.5 bits (145), Expect = 2.810e-8
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   16 VIGFTEAATGLGFLLGPTIGGVMYSNGGFQLPFIVSGSVMLSQLLLFFCIFAVDK 180
            V G  E  TGLGF+LGP +GGV+YS GGF+LPFIV G V+L+ + +   I  +DK
Sbjct:  192 VTGAMETFTGLGFMLGPPLGGVLYSAGGFKLPFIVMGGVLLAIVPVVMIILPMDK 246
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BLAST of mRNA_H-fluviatilis_contig100983.266.1 vs. uniprot
Match: UPI0009E47CBB (MFS-type transporter SLC18B1-like isoform X1 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E47CBB)

HSP 1 Score: 60.1 bits (144), Expect = 3.850e-8
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 TRTADVIGFTEAATGLGFLLGPTIGGVMYSNGGFQLPFIVSGSVMLSQLLLFFCIFAVDK 180
            T    V G  E  TGLGF+LGP +GG++YS GGF+LPFIV G ++LS L +   I   D+
Sbjct:  203 TNIGKVTGAMETFTGLGFMLGPPLGGILYSAGGFKLPFIVMGGLLLSILPVVLVILPKDE 262
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BLAST of mRNA_H-fluviatilis_contig100983.266.1 vs. uniprot
Match: A0A0N5CZW4_THECL (MFS domain-containing protein n=1 Tax=Thelazia callipaeda TaxID=103827 RepID=A0A0N5CZW4_THECL)

HSP 1 Score: 59.3 bits (142), Expect = 6.830e-8
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    4 RTADVIGFTEAATGLGFLLGPTIGGVMYSNGGFQLPFIVSGSVMLS-QLLLFFCIFAVDKRPGAD 195
            R A +IG  E   GLG+  GP +GG++Y  GGFQLPF+V G V+L   LL +F I  +D   G D
Sbjct:  127 RVATIIGILETFAGLGYTAGPPLGGMLYEIGGFQLPFLVLGLVLLFISLLAYFLIEKIDAMNGKD 191
[Close]
BLAST of mRNA_H-fluviatilis_contig100983.266.1 vs. uniprot
Match: A0A3M6UJX0_POCDA (MFS domain-containing protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UJX0_POCDA)

HSP 1 Score: 58.5 bits (140), Expect = 1.330e-7
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   16 VIGFTEAATGLGFLLGPTIGGVMYSNGGFQLPFIVSGSVMLSQLLLFFCIFAVDK 180
            V G  E  TGLGF+LGP +GGV+YS GGF+LPFIV G ++LS L +   I   D+
Sbjct:  191 VTGAMETFTGLGFMLGPPLGGVLYSAGGFKLPFIVLGGLLLSILPVVMLILPKDQ 245
[Close]
BLAST of mRNA_H-fluviatilis_contig100983.266.1 vs. uniprot
Match: A0A7M5X9V3_9CNID (MFS domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X9V3_9CNID)

HSP 1 Score: 58.2 bits (139), Expect = 1.830e-7
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   16 VIGFTEAATGLGFLLGPTIGGVMYSNGGFQLPFIVSGSVMLSQLLLFFCIF 168
            V G TE  TGLGF+ GP +GGV+Y +GGF++PF+V G +++   ++ FC+F
Sbjct:  216 VFGVTELFTGLGFMAGPALGGVLYQHGGFKMPFLVCGGLVI---VVLFCVF 263
[Close]
BLAST of mRNA_H-fluviatilis_contig100983.266.1 vs. uniprot
Match: A0A2B4SAW4_STYPI (MFS-type transporter SLC18B1 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SAW4_STYPI)

HSP 1 Score: 57.8 bits (138), Expect = 1.930e-7
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   31 EAATGLGFLLGPTIGGVMYSNGGFQLPFIVSGSVMLSQLLLFFCIFAVDK 180
            E  TGLGF+LGP +GGV+YS GGF+LPFIV GS++LS L +   I   D+
Sbjct:    2 ETFTGLGFMLGPPLGGVLYSAGGFKLPFIVLGSLLLSILPVVILILPRDQ 51
[Close]
BLAST of mRNA_H-fluviatilis_contig100983.266.1 vs. uniprot
Match: A0A1X7TYG0_AMPQE (MFS domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TYG0_AMPQE)

HSP 1 Score: 57.8 bits (138), Expect = 2.440e-7
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 TRTADVIGFTEAATGLGFLLGPTIGGVMYSNGGFQLPFIVSGSVMLSQLLLF 156
            T+T  VIG  E  +G+GF +GP +GG +Y  GGF LPF+V+GS +L  ++LF
Sbjct:  168 TKTGTVIGMLELGSGIGFAIGPPLGGFLYKIGGFFLPFLVTGSTVLVFIILF 219
[Close]
BLAST of mRNA_H-fluviatilis_contig100983.266.1 vs. uniprot
Match: R7UTW6_CAPTE (MFS domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UTW6_CAPTE)

HSP 1 Score: 57.8 bits (138), Expect = 2.470e-7
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   10 ADVIGFTEAATGLGFLLGPTIGGVMYSNGGFQLPFIVSGSVMLSQLLLFFCIFAVDKR 183
            A V+G  E A G+G +LGP +GGV+Y  GGF +PF+V GS M+  + +  C+   ++R
Sbjct:  207 ATVLGLLETAVGIGLMLGPALGGVLYEVGGFMMPFLVLGSFMMLTVPISLCVLPREER 264
[Close]
BLAST of mRNA_H-fluviatilis_contig100983.266.1 vs. uniprot
Match: A0A369S6M1_9METZ (MFS-type transporter SLC18B1 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369S6M1_9METZ)

HSP 1 Score: 57.4 bits (137), Expect = 3.340e-7
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   10 ADVIGFTEAATGLGFLLGPTIGGVMYSNGGFQLPFIVSGSVMLSQLLLFFC 162
            A V+G  E A+ LG + GP++GG+ ++ GGF+LPFIVSGS++L+   + FC
Sbjct:  170 ATVVGVIEVASVLGLMAGPSLGGIFFNLGGFKLPFIVSGSLLLASSFISFC 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100983.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C03EA682.450e-856.36MFS-type transporter SLC18B1-like isoform X3 n=1 T... [more]
UPI0010FCCEBC2.810e-854.55MFS-type transporter SLC18B1-like isoform X1 n=2 T... [more]
UPI0009E47CBB3.850e-850.00MFS-type transporter SLC18B1-like isoform X1 n=1 T... [more]
A0A0N5CZW4_THECL6.830e-847.69MFS domain-containing protein n=1 Tax=Thelazia cal... [more]
A0A3M6UJX0_POCDA1.330e-754.55MFS domain-containing protein n=2 Tax=Pocillopora ... [more]
A0A7M5X9V3_9CNID1.830e-749.02MFS domain-containing protein n=1 Tax=Clytia hemis... [more]
A0A2B4SAW4_STYPI1.930e-758.00MFS-type transporter SLC18B1 n=2 Tax=Stylophora pi... [more]
A0A1X7TYG0_AMPQE2.440e-750.00MFS domain-containing protein n=1 Tax=Amphimedon q... [more]
R7UTW6_CAPTE2.470e-743.10MFS domain-containing protein n=1 Tax=Capitella te... [more]
A0A369S6M1_9METZ3.340e-749.02MFS-type transporter SLC18B1 n=1 Tax=Trichoplax sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100983contigH-fluviatilis_contig100983:77..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size354
Cds size351
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100983.266.1prot_H-fluviatilis_contig100983.266.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100983 79..527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.7907252-CDS-H-fluviatilis_contig100983:78..3111622929027.7907252-CDS-H-fluviatilis_contig100983:78..311Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100983 79..311 -
1691135155.3835752-CDS-H-fluviatilis_contig100983:78..3111691135155.3835752-CDS-H-fluviatilis_contig100983:78..311Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100983 79..311 -
1622929027.8040383-CDS-H-fluviatilis_contig100983:354..3991622929027.8040383-CDS-H-fluviatilis_contig100983:354..399Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100983 355..399 -
1691135155.3953125-CDS-H-fluviatilis_contig100983:354..3991691135155.3953125-CDS-H-fluviatilis_contig100983:354..399Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100983 355..399 -
1622929027.8154001-CDS-H-fluviatilis_contig100983:424..4751622929027.8154001-CDS-H-fluviatilis_contig100983:424..475Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100983 425..475 -
1691135155.4069827-CDS-H-fluviatilis_contig100983:424..4751691135155.4069827-CDS-H-fluviatilis_contig100983:424..475Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100983 425..475 -
1622929027.8363004-CDS-H-fluviatilis_contig100983:505..5271622929027.8363004-CDS-H-fluviatilis_contig100983:505..527Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100983 506..527 -
1691135155.420394-CDS-H-fluviatilis_contig100983:505..5271691135155.420394-CDS-H-fluviatilis_contig100983:505..527Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100983 506..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100983.266.1

>prot_H-fluviatilis_contig100983.266.1 ID=prot_H-fluviatilis_contig100983.266.1|Name=mRNA_H-fluviatilis_contig100983.266.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=117bp
TRTADVIGFTEAATGLGFLLGPTIGGVMYSNGGFQLPFIVSGSVMLSQLL
LFFCIFAVDKRPGADCERAPPIPTNTDGVASEPVKGVSGASSAYVNGQRL
EVVSLQHLLAPSTSRPS
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mRNA from alignment at H-fluviatilis_contig100983:77..527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100983.266.1 ID=mRNA_H-fluviatilis_contig100983.266.1|Name=mRNA_H-fluviatilis_contig100983.266.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=451bp|location=Sequence derived from alignment at H-fluviatilis_contig100983:77..527- (Heribaudiella fluviatilis SAG_13_90)
ACAAGAACCGCAGATGTCATTGGTACCCGCTGAGCTGGACTTTCTCGCGC
AGGGTTCACTGAAGCAGCCACCGGGTTAGGATTCCTACTGGGGCCAACAA
TAGGTAATTGATGCGGTCTCATGCGCAGGCGGTGTCATGTACAGTAATGG
CGGGTTTCAGTTGCCGTTCATCGGTATGCAGCGTGGTTTACCTGACATGA
CCTATGTGCGTGTCAGTTTCGGGCTCCGTGATGTTATCGCAGCTGTTGCT
GTTCTTTTGCATCTTTGCGGTGGACAAACGGCCTGGAGCTGACTGTGAGC
GGGCACCGCCAATACCCACCAACACCGACGGTGTTGCTTCTGAACCTGTT
AAGGGGGTGTCCGGCGCATCCAGTGCATATGTCAACGGACAACGATTGGA
GGTGGTGTCGTTGCAGCACTTGCTTGCCCCCTCCACCTCCCGCCCTTCGG
G
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100983:77..527-

>mRNA_H-fluviatilis_contig100983.266.1 ID=mRNA_H-fluviatilis_contig100983.266.1|Name=mRNA_H-fluviatilis_contig100983.266.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=702bp|location=Sequence derived from alignment at H-fluviatilis_contig100983:77..527- (Heribaudiella fluviatilis SAG_13_90)
ACAAGAACCGCAGATGTCATTGACAAGAACCGCAGATGTCATTGGGTTCA
CTGAAGCAGCCACCGGGTTAGGATTCCTACTGGGGCCAACAATAGGGTTC
ACTGAAGCAGCCACCGGGTTAGGATTCCTACTGGGGCCAACAATAGGCGG
TGTCATGTACAGTAATGGCGGGTTTCAGTTGCCGTTCATCGGCGGTGTCA
TGTACAGTAATGGCGGGTTTCAGTTGCCGTTCATCGTTTCGGGCTCCGTG
ATGTTATCGCAGCTGTTGCTGTTCTTTTGCATCTTTGCGGTGGACAAACG
GCCTGGAGCTGACTGTGAGCGGGCACCGCCAATACCCACCAACACCGACG
GTGTTGCTTCTGAACCTGTTAAGGGGGTGTCCGGCGCATCCAGTGCATAT
GTCAACGGACAACGATTGGAGGTGGTGTCGTTGCAGCACTTGCTTGCCCC
CTCCACCTCCCGCCCTTCGTTTCGGGCTCCGTGATGTTATCGCAGCTGTT
GCTGTTCTTTTGCATCTTTGCGGTGGACAAACGGCCTGGAGCTGACTGTG
AGCGGGCACCGCCAATACCCACCAACACCGACGGTGTTGCTTCTGAACCT
GTTAAGGGGGTGTCCGGCGCATCCAGTGCATATGTCAACGGACAACGATT
GGAGGTGGTGTCGTTGCAGCACTTGCTTGCCCCCTCCACCTCCCGCCCTT
CG
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