mRNA_H-fluviatilis_contig100978.265.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100978.265.1
Unique NamemRNA_H-fluviatilis_contig100978.265.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig100978.265.1 vs. uniprot
Match: D7FMU9_ECTSI (Putative serine-threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMU9_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 1.050e-64
Identity = 100/123 (81.30%), Postives = 110/123 (89.43%), Query Frame = 1
Query:    1 GVLSRTRQARERLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCLDGTVKLGDLGLGRYLHARSALAMSQVGTPLYMSPETLQGQGHEMVSDIWSLGCVLYELAMLSSPFAARHLTM 369
            GVL RT+QA +RL+E+ VWGYFTQICDALLHMHG+RI+HRD+KPANV V  DG VKLGDLGLGRYL ARS LAMSQVGTPLYMSPETL+GQGH+M SDIWSLGCVLYELA L SPFA +HLTM
Sbjct:  258 GVLRRTKQAGQRLDEITVWGYFTQICDALLHMHGERIIHRDVKPANVFVSRDGIVKLGDLGLGRYLSARSVLAMSQVGTPLYMSPETLKGQGHDMGSDIWSLGCVLYELAQLESPFAGKHLTM 380          
BLAST of mRNA_H-fluviatilis_contig100978.265.1 vs. uniprot
Match: A0A6H5KNN9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN9_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 5.480e-61
Identity = 98/123 (79.67%), Postives = 109/123 (88.62%), Query Frame = 1
Query:    1 GVLSRTRQARERLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCLDGTVKLGDLGLGRYLHARSALAMSQVGTPLYMSPETLQGQGHEMVSDIWSLGCVLYELAMLSSPFAARHLTM 369
            GVL RT+Q+  RL+E+ VWGYFTQICDALLHMHG+RI+HRD+KPANV V  DG VKLGDLGLGRYL ARS LAMSQVGTPLYMSPETL+GQG++M SDIWSLGCVLYELA L SPFA +HLTM
Sbjct:  559 GVLRRTKQSGRRLDEITVWGYFTQICDALLHMHGERIIHRDIKPANVFVSRDGIVKLGDLGLGRYLSARSVLAMSQVGTPLYMSPETLKGQGYDMGSDIWSLGCVLYELAQLESPFAGKHLTM 681          
BLAST of mRNA_H-fluviatilis_contig100978.265.1 vs. uniprot
Match: F0Y2C1_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2C1_AURAN)

HSP 1 Score: 155 bits (393), Expect = 6.480e-45
Identity = 76/120 (63.33%), Postives = 91/120 (75.83%), Query Frame = 1
Query:   19 RQARER---LNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCLDGTVKLGDLGLGRYLHARSALAMSQVGTPLYMSPETLQGQGHEMVSDIWSLGCVLYELAMLSSPFAARHLTM 369
            R+A ER     E  +W YF+QICDAL HMH QRI+HRDLKPANV + L+GTVK+GDLGLGR +   +  A S+VGTPLYMSPE L+G G++  SD+WSLGCVLYELAML SPF A  L +
Sbjct:   93 RKAVERKQGFEERVIWKYFSQICDALAHMHEQRILHRDLKPANVFLTLNGTVKVGDLGLGRMMSEHTFEAHSKVGTPLYMSPEVLRGDGYDWKSDVWSLGCVLYELAMLRSPFKAEGLNL 212          
BLAST of mRNA_H-fluviatilis_contig100978.265.1 vs. uniprot
Match: A0A7S1GED1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GED1_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.040e-44
Identity = 72/121 (59.50%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    7 LSRTRQARERLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCLDGTVKLGDLGLGRYLHARSALAMSQVGTPLYMSPETLQGQGHEMVSDIWSLGCVLYELAMLSSPFAARHLTM 369
            L + R+   R +E  +W YF+QI +AL HMH +R+MHRDLKPANV + L+GTVK+GDLGLGR+    +  A S+VGTPLYMSPE L+G+G+E  SD+WSLGCVLYELAML+SPF    L +
Sbjct:  122 LRKAREREARFDERVIWKYFSQIAEALRHMHERRVMHRDLKPANVFLTLNGTVKVGDLGLGRHFSEATMEAYSKVGTPLYMSPEVLRGKGYEWKSDVWSLGCVLYELAMLTSPFKEEGLNL 242          
BLAST of mRNA_H-fluviatilis_contig100978.265.1 vs. uniprot
Match: A0A812TRW5_9DINO (Nekl-3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TRW5_9DINO)

HSP 1 Score: 154 bits (389), Expect = 3.560e-44
Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    7 LSRTRQARERLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCLDGTVKLGDLGLGRYLHARSALAMSQVGTPLYMSPETLQGQGHEMVSDIWSLGCVLYELAMLSSPFAARHLTM 369
            L + R+   R +E  +W YF+Q+  A+ HMH + +MHRDLKPAN+ + L+GTVK+GDLGLGRYL   +  A S+VGTPLYMSPE LQG+G++  SD+WSLGCVLYELAML SPF    L +
Sbjct:   54 LRKARERNARFDERVIWKYFSQVAAAVAHMHERHVMHRDLKPANIFLTLNGTVKVGDLGLGRYLSEHTLEAFSKVGTPLYMSPEVLQGKGYDYKSDVWSLGCVLYELAMLISPFKEEGLNL 174          
BLAST of mRNA_H-fluviatilis_contig100978.265.1 vs. uniprot
Match: A0A7S2CWM8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CWM8_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.440e-44
Identity = 76/122 (62.30%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    4 VLSRTRQARERLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCLDGTVKLGDLGLGRYLHARSALAMSQVGTPLYMSPETLQGQGHEMVSDIWSLGCVLYELAMLSSPFAARHLTM 369
            ++S  +   + L E  VW YF+Q  +A+ HMH  RIMHRDLKP+NV V  DG +KLGDLGLGRYL  +S +A SQVGTPLYMSPE L+G+GH   SDIWSLGC+LYELA L SPF  R LTM
Sbjct:  193 LISSYKAKNQTLGEHLVWTYFSQCAEAIRHMHEVRIMHRDLKPSNVFVMEDGRLKLGDLGLGRYLDLQSIMAFSQVGTPLYMSPEVLRGEGHHFSSDIWSLGCMLYELAHLRSPFQQRGLTM 314          
BLAST of mRNA_H-fluviatilis_contig100978.265.1 vs. uniprot
Match: A0A7S2C573_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C573_9STRA)

HSP 1 Score: 152 bits (385), Expect = 6.150e-43
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 1
Query:   13 RTRQARE-RLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCLDGTVKLGDLGLGRYLHARSALAMSQVGTPLYMSPETLQGQGHEMVSDIWSLGCVLYELAMLSSPFAARHLTM 369
            R  Q RE R  E  +W YF QIC+A+ HMH +RIMHRDLKPAN+ + L+GTVK+GDLGLGR L   +  A S+VGTPLYMSPE L+G G++  SD+WS+GC+LYELAML SPF +  L +
Sbjct:  121 RKAQEREARFEERVIWRYFAQICEAIQHMHERRIMHRDLKPANIFLTLNGTVKVGDLGLGRELSEHTVEAHSKVGTPLYMSPEVLRGDGYDFRSDVWSVGCLLYELAMLKSPFKSEGLNL 240          
BLAST of mRNA_H-fluviatilis_contig100978.265.1 vs. uniprot
Match: A0A813BYI9_9DINO (Nek7 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BYI9_9DINO)

HSP 1 Score: 150 bits (380), Expect = 1.300e-42
Identity = 69/121 (57.02%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    7 LSRTRQARERLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCLDGTVKLGDLGLGRYLHARSALAMSQVGTPLYMSPETLQGQGHEMVSDIWSLGCVLYELAMLSSPFAARHLTM 369
            L + R+   R +E  +W YF+QI +AL HMH +RIMHRDLKPAN+ + L G VK+GDLGLGR L   +    S+VGTPLYMSPE L+GQG+   SD+WS+GC+LYELAML SPF  + L +
Sbjct:   54 LVKAREREARFDERVIWKYFSQIAEALRHMHSRRIMHRDLKPANIFLTLTGAVKVGDLGLGRILSEATVEIYSKVGTPLYMSPEVLKGQGYNWKSDVWSIGCILYELAMLQSPFKEQGLNL 174          
BLAST of mRNA_H-fluviatilis_contig100978.265.1 vs. uniprot
Match: G4ZQK0_PHYSP (Protein kinase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZQK0_PHYSP)

HSP 1 Score: 150 bits (378), Expect = 1.450e-42
Identity = 69/120 (57.50%), Postives = 90/120 (75.00%), Query Frame = 1
Query:   19 RQARE---RLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCLDGTVKLGDLGLGRYLHARSALAMSQVGTPLYMSPETLQGQGHEMVSDIWSLGCVLYELAMLSSPFAARHLTM 369
            R+A E   R +E  +W YFTQ+C A+L++H  RIMHRDLKPAN+ + L G VK+GDLGLGRYL   +  A S+VGTPLYMSPE L+G+ ++  SD+WS+GC+LYELAML SPF +  L +
Sbjct:  111 RKANEKGVRFDERTIWRYFTQLCGAILYLHQARIMHRDLKPANIFLTLKGVVKVGDLGLGRYLSENTVEARSKVGTPLYMSPEVLRGESYDWKSDVWSMGCILYELAMLRSPFKSEGLNL 230          
BLAST of mRNA_H-fluviatilis_contig100978.265.1 vs. uniprot
Match: W2QCF6_PHYPN (NEK protein kinase n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QCF6_PHYPN)

HSP 1 Score: 150 bits (378), Expect = 1.480e-42
Identity = 69/120 (57.50%), Postives = 90/120 (75.00%), Query Frame = 1
Query:   19 RQARE---RLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCLDGTVKLGDLGLGRYLHARSALAMSQVGTPLYMSPETLQGQGHEMVSDIWSLGCVLYELAMLSSPFAARHLTM 369
            R+A E   R +E  +W YFTQ+C A+L++H  RIMHRDLKPAN+ + L G VK+GDLGLGRYL   +  A S+VGTPLYMSPE L+G+ ++  SD+WS+GC+LYELAML SPF +  L +
Sbjct:  111 RKANEKGVRFDERTIWRYFTQLCGAILYLHQNRIMHRDLKPANIFLTLKGVVKVGDLGLGRYLSENTIEARSKVGTPLYMSPEVLRGESYDWKSDVWSMGCILYELAMLRSPFKSEGLNL 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100978.265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMU9_ECTSI1.050e-6481.30Putative serine-threonine protein kinase n=1 Tax=E... [more]
A0A6H5KNN9_9PHAE5.480e-6179.67Protein kinase domain-containing protein n=1 Tax=E... [more]
F0Y2C1_AURAN6.480e-4563.33Protein kinase domain-containing protein (Fragment... [more]
A0A7S1GED1_9STRA3.040e-4459.50Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812TRW5_9DINO3.560e-4457.85Nekl-3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A7S2CWM8_9STRA6.440e-4462.30Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2C573_9STRA6.150e-4360.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A813BYI9_9DINO1.300e-4257.02Nek7 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
G4ZQK0_PHYSP1.450e-4257.50Protein kinase domain-containing protein n=4 Tax=P... [more]
W2QCF6_PHYPN1.480e-4257.50NEK protein kinase n=1 Tax=Phytophthora parasitica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100978contigH-fluviatilis_contig100978:18..834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.2
Seed ortholog evalue3.5e-53
Seed eggNOG ortholog2880.D7FMU9
KEGG koko:K08857,ko:K20876
KEGG TC1.I.1.1.3
KEGG Pathwayko04621,map04621
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0591@1,KOG0591@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.7330093-CDS-H-fluviatilis_contig100978:17..2081622929027.7330093-CDS-H-fluviatilis_contig100978:17..208Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100978 18..208 +
1691135155.3556945-CDS-H-fluviatilis_contig100978:17..2081691135155.3556945-CDS-H-fluviatilis_contig100978:17..208Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100978 18..208 +
1622929027.7485738-CDS-H-fluviatilis_contig100978:656..8341622929027.7485738-CDS-H-fluviatilis_contig100978:656..834Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100978 657..834 +
1691135155.3730655-CDS-H-fluviatilis_contig100978:656..8341691135155.3730655-CDS-H-fluviatilis_contig100978:656..834Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100978 657..834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100978.265.1prot_H-fluviatilis_contig100978.265.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100978 18..834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100978.265.1

>prot_H-fluviatilis_contig100978.265.1 ID=prot_H-fluviatilis_contig100978.265.1|Name=mRNA_H-fluviatilis_contig100978.265.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=123bp
GVLSRTRQARERLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVC
LDGTVKLGDLGLGRYLHARSALAMSQVGTPLYMSPETLQGQGHEMVSDIW
SLGCVLYELAMLSSPFAARHLTM
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mRNA from alignment at H-fluviatilis_contig100978:18..834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100978.265.1 ID=mRNA_H-fluviatilis_contig100978.265.1|Name=mRNA_H-fluviatilis_contig100978.265.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=817bp|location=Sequence derived from alignment at H-fluviatilis_contig100978:18..834+ (Heribaudiella fluviatilis SAG_13_90)
GGCGTGCTCTCACGAACGAGGCAAGCGCGAGAGCGGCTCAATGAGCTGGC GGTTTGGGGTTACTTTACGCAAATCTGCGACGCGCTATTGCACATGCACG GACAACGAATCATGCACCGAGACCTCAAACCCGCTAACGTTTTGGTGTGT CTTGATGGGACCGTGAAGCTCGGGGATCTAGGGCTCGGCCGGTGAGTGAT AGGGTGGGTTACGCCGTTATGCCTCATTTCATACACAGTTTTCTTCGTGA CGGCGAGCGCGCGCGCGCGACGGGGGTGCGGCGATGATTAGCTCAAGCTT TTTTTCCCAGTCGCGCACCAGGTGCACAGTTGTTCGAGCAACACGTACCA AGCGCAGGATGACGGCTAATCGTACGACCATGAAATAGTCATTCGCCAGA GGTGTTATAGTAAAGACTTCAGCGGCATCGCATTTTTTAATTAGACACGA GCTTGCCCTCCTTTTTCAAGCCTTCATGTTTTCGTGCGGCAGATCACCGA TTAAGAAACGATGGCATCGGCGGTAGTACAACCTGCTGCTGAAAACGTGG CACTCGACGACTTAATTTCACTATTTCCTTTTCACTTGACAACCCCTGCA CCACCATCCACCCACTTCTCAACCATGTCTTACGTGCAGATATTTACACG CCCGAAGCGCTTTAGCGATGTCCCAAGTGGGCACGCCGCTGTACATGTCG CCTGAAACGCTGCAGGGACAGGGCCACGAGATGGTGTCGGATATTTGGTC GCTAGGCTGCGTGCTTTACGAGCTGGCGATGCTGTCATCGCCCTTCGCGG CGAGGCATCTCACCATG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100978:18..834+

>mRNA_H-fluviatilis_contig100978.265.1 ID=mRNA_H-fluviatilis_contig100978.265.1|Name=mRNA_H-fluviatilis_contig100978.265.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=738bp|location=Sequence derived from alignment at H-fluviatilis_contig100978:18..834+ (Heribaudiella fluviatilis SAG_13_90)
GGCGTGCTCTCACGAACGAGGCAAGCGCGAGAGCGGCTCAATGAGCTGGC
GGTTTGGGGTTACTTTACGCAAATCTGCGACGCGCTATTGCACATGCACG
GACAACGAATCATGCACCGAGACCTCAAACCCGCTAACGTTTTGGTGTGT
CTTGATGGGACCGTGAAGCTCGGGGATCTAGGGCTCGGCCGGGCGTGCTC
TCACGAACGAGGCAAGCGCGAGAGCGGCTCAATGAGCTGGCGGTTTGGGG
TTACTTTACGCAAATCTGCGACGCGCTATTGCACATGCACGGACAACGAA
TCATGCACCGAGACCTCAAACCCGCTAACGTTTTGGTGTGTCTTGATGGG
ACCGTGAAGCTCGGGGATCTAGGGCTCGGCCGATATTTACACGCCCGAAG
CGCTTTAGCGATGTCCCAAGTGGGCACGCCGCTGTACATGTCGCCTGAAA
CGCTGCAGGGACAGGGCCACGAGATGGTGTCGGATATTTGGTCGCTAGGC
TGCGTGCTTTACGAGCTGGCGATGCTGTCATCGCCCTTCGCGGCGAGGCA
TCTCACCATGATATTTACACGCCCGAAGCGCTTTAGCGATGTCCCAAGTG
GGCACGCCGCTGTACATGTCGCCTGAAACGCTGCAGGGACAGGGCCACGA
GATGGTGTCGGATATTTGGTCGCTAGGCTGCGTGCTTTACGAGCTGGCGA
TGCTGTCATCGCCCTTCGCGGCGAGGCATCTCACCATG
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