mRNA_H-fluviatilis_contig100970.263.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100970.263.1
Unique NamemRNA_H-fluviatilis_contig100970.263.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig100970.263.1 vs. uniprot
Match: D7FXE9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXE9_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 5.550e-36
Identity = 58/81 (71.60%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 ALAYDGPAFRGMDAGSFSEDDWAFGSESVRVLSGLYGVLKPTDLIQPYRLEMGSRVGIAGSRDLYTYWADRVTQCLLQDVQ 243
            AL +DGPA+RGMDA +FSE+DWAFG+ SVR+LSGLYGVL+PTDLIQPYRLEMGSRV +AG +DLY YW   + QC+L+D+Q
Sbjct:   95 ALVFDGPAYRGMDAATFSEEDWAFGARSVRLLSGLYGVLRPTDLIQPYRLEMGSRVAVAGMKDLYEYWKGDIAQCILEDIQ 175          
BLAST of mRNA_H-fluviatilis_contig100970.263.1 vs. uniprot
Match: A0A7S4FNY1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FNY1_9EUGL)

HSP 1 Score: 100 bits (248), Expect = 1.040e-23
Identity = 43/79 (54.43%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    4 LAYDGPAFRGMDAGSFSEDDWAFGSESVRVLSGLYGVLKPTDLIQPYRLEMGSRVGIAGSRDLYTYWADRVTQCLLQDV 240
            LA+DGPAFRG+ A +F + D AF  + +R+LSGLYG+L+P DLIQPYRLEMGS++     +DLY++W D++T+ L  D+
Sbjct:   76 LAFDGPAFRGLQAATFDDSDQAFAQQHLRILSGLYGILRPYDLIQPYRLEMGSKLETPKGKDLYSFWGDQITEQLNADL 154          
BLAST of mRNA_H-fluviatilis_contig100970.263.1 vs. uniprot
Match: A0A0L8V3I9_9BACT (UPF0246 protein NC99_41950 n=1 Tax=Sunxiuqinia dokdonensis TaxID=1409788 RepID=A0A0L8V3I9_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 2.710e-23
Identity = 41/82 (50.00%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    4 LAYDGPAFRGMDAGSFSEDDWAFGSESVRVLSGLYGVLKPTDLIQPYRLEMGSRVGIAGSRDLYTYWADRVTQCLLQDVQEG 249
            LA+ G  ++GMDA +FSE+D+    +++R+LSGLYGVLKP DLIQ YRLEMG++ G+ G+ +LY +W ++VT+ + +D++E 
Sbjct:   81 LAFTGDVYQGMDAATFSENDFEVAQQTIRILSGLYGVLKPLDLIQAYRLEMGTKFGVEGAENLYGFWKEKVTKAINKDLKEA 162          
BLAST of mRNA_H-fluviatilis_contig100970.263.1 vs. uniprot
Match: Y1607_PSEA7 (UPF0246 protein PSPA7_1607 n=131 Tax=Bacteria TaxID=2 RepID=Y1607_PSEA7)

HSP 1 Score: 98.2 bits (243), Expect = 2.930e-23
Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    4 LAYDGPAFRGMDAGSFSEDDWAFGSESVRVLSGLYGVLKPTDLIQPYRLEMGSRVGIAGSRDLYTYWADRVTQCL 228
            LA+ G  + G+DA SFSEDD+AF  E +R+LSGLYGVL+P DL+QPYRLEMG+R+  A  +DLY +W +R++Q L
Sbjct:   81 LAFKGDVYTGLDAESFSEDDFAFAQEHLRMLSGLYGVLRPLDLMQPYRLEMGTRLANARGKDLYAFWGERISQWL 155          
BLAST of mRNA_H-fluviatilis_contig100970.263.1 vs. uniprot
Match: UPI00191F445A (peroxide stress protein YaaA n=1 Tax=Marivirga atlantica TaxID=1548457 RepID=UPI00191F445A)

HSP 1 Score: 97.8 bits (242), Expect = 3.960e-23
Identity = 42/82 (51.22%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 ALAYDGPAFRGMDAGSFSEDDWAFGSESVRVLSGLYGVLKPTDLIQPYRLEMGSRVGIAGSRDLYTYWADRVTQCLLQDVQE 246
            ALA+ G  ++GM A  F++++  F  E VR+LSGLYG+LKP DLIQPYRLEMG+++ + GS+ LY YW D++ + L++D++E
Sbjct:   78 ALAFQGDVYQGMQAEEFTKEEHNFAQEHVRILSGLYGLLKPLDLIQPYRLEMGTKLKVNGSKSLYEYWDDKIAKTLVKDLKE 159          
BLAST of mRNA_H-fluviatilis_contig100970.263.1 vs. uniprot
Match: A0A3M1VGY7_9BACT (UPF0246 protein D6725_03990 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1VGY7_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 4.360e-23
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 ALAYDGPAFRGMDAGSFSEDDWAFGSESVRVLSGLYGVLKPTDLIQPYRLEMGSRVGIAGSRDLYTYWADRVTQCLLQDVQ 243
            AL + G  ++G+ A +FS +DW F  + VR+LSGLYGVL+P DL+QPYRLEMG+R+     +DLY YW DRVT  L +D++
Sbjct:   80 ALLFRGDVYQGLQADAFSPEDWRFAQQHVRILSGLYGVLRPLDLVQPYRLEMGTRLPNPRGQDLYAYWRDRVTDLLSRDLK 160          
BLAST of mRNA_H-fluviatilis_contig100970.263.1 vs. uniprot
Match: UPI00135CCB98 (peroxide stress protein YaaA n=1 Tax=Sunxiuqinia indica TaxID=2692584 RepID=UPI00135CCB98)

HSP 1 Score: 97.4 bits (241), Expect = 5.260e-23
Identity = 41/82 (50.00%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    4 LAYDGPAFRGMDAGSFSEDDWAFGSESVRVLSGLYGVLKPTDLIQPYRLEMGSRVGIAGSRDLYTYWADRVTQCLLQDVQEG 249
            LA+ G  ++GMDA SF++ D+    E +R+LSGLYGVLKP DLIQPYRLEMG++ G+ G  +LY +W ++VT+ + ++++ G
Sbjct:   81 LAFTGDVYQGMDAESFTDKDFEVAQEKIRILSGLYGVLKPLDLIQPYRLEMGTKFGVNGRNNLYDFWQEKVTKAISKELKAG 162          
BLAST of mRNA_H-fluviatilis_contig100970.263.1 vs. uniprot
Match: A0A1G6T767_9BURK (UPF0246 protein SAMN05216345_107140 n=1 Tax=Cupriavidus sp. YR651 TaxID=1855315 RepID=A0A1G6T767_9BURK)

HSP 1 Score: 97.4 bits (241), Expect = 6.010e-23
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    4 LAYDGPAFRGMDAGSFSEDDWAFGSESVRVLSGLYGVLKPTDLIQPYRLEMGSRVGIAGSRDLYTYWADRVTQCLLQDVQE 246
            LA++G  + G+DA S S DD AF  + +R+LSGLYGVL+P D +QPYRLEMG+R+  A  RDLY +W D VTQ + QD+ +
Sbjct:   81 LAFNGDVYDGLDAKSLSTDDLAFAQKHIRILSGLYGVLRPMDWMQPYRLEMGTRLDTAAGRDLYAFWGDDVTQLINQDMTD 161          
BLAST of mRNA_H-fluviatilis_contig100970.263.1 vs. uniprot
Match: A0A800EFA5_9CHLR (UPF0246 protein EYQ00_10265 n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A800EFA5_9CHLR)

HSP 1 Score: 95.9 bits (237), Expect = 1.570e-22
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 ALAYDGPAFRGMDAGSFSEDDWAFGSESVRVLSGLYGVLKPTDLIQPYRLEMGSRVGIAGSRDLYTYWADRVTQCLLQDVQE 246
            A A+ G  ++G+    F+E+D  F  + VR+LSGLYGVL+P DLIQPYRLEMG+R+  A   DLY YW   ++ CL+ D++E
Sbjct:   65 AFAFSGDVYKGLAIDDFTENDLQFAQDHVRILSGLYGVLRPLDLIQPYRLEMGTRLDTAAGSDLYQYWGSSISDCLMADLEE 146          
BLAST of mRNA_H-fluviatilis_contig100970.263.1 vs. uniprot
Match: A0A5M8A492_9BURK (UPF0246 protein F1599_24340 n=9 Tax=Cupriavidus TaxID=106589 RepID=A0A5M8A492_9BURK)

HSP 1 Score: 96.3 bits (238), Expect = 1.800e-22
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 ALAYDGPAFRGMDAGSFSEDDWAFGSESVRVLSGLYGVLKPTDLIQPYRLEMGSRVGIAGSRDLYTYWADRVTQCLLQDV 240
            ALA++G  + G+DA S S+DD AF    VR+LSGLYGVL+P D +QPYRLEMG+R+     +DLY +W D VTQ L +D+
Sbjct:   84 ALAFNGDVYEGLDAPSLSDDDLAFAQRHVRILSGLYGVLRPLDWMQPYRLEMGTRLANEAGKDLYAFWGDDVTQLLNKDL 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100970.263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXE9_ECTSI5.550e-3671.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4FNY1_9EUGL1.040e-2354.43Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0L8V3I9_9BACT2.710e-2350.00UPF0246 protein NC99_41950 n=1 Tax=Sunxiuqinia dok... [more]
Y1607_PSEA72.930e-2358.67UPF0246 protein PSPA7_1607 n=131 Tax=Bacteria TaxI... [more]
UPI00191F445A3.960e-2351.22peroxide stress protein YaaA n=1 Tax=Marivirga atl... [more]
A0A3M1VGY7_9BACT4.360e-2353.09UPF0246 protein D6725_03990 n=1 Tax=Planctomycetes... [more]
UPI00135CCB985.260e-2350.00peroxide stress protein YaaA n=1 Tax=Sunxiuqinia i... [more]
A0A1G6T767_9BURK6.010e-2354.32UPF0246 protein SAMN05216345_107140 n=1 Tax=Cupria... [more]
A0A800EFA5_9CHLR1.570e-2250.00UPF0246 protein EYQ00_10265 n=1 Tax=Dehalococcoidi... [more]
A0A5M8A492_9BURK1.800e-2255.00UPF0246 protein F1599_24340 n=9 Tax=Cupriavidus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100970contigH-fluviatilis_contig100970:4..723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue4.1e-29
Seed eggNOG ortholog2880.D7FXE9
EggNOG free text desc.Peroxide stress protein YaaA
EggNOG OGs2QWDD@2759,COG3022@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.622021-CDS-H-fluviatilis_contig100970:3..1671622929027.622021-CDS-H-fluviatilis_contig100970:3..167Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100970 4..167 +
1691135155.3143182-CDS-H-fluviatilis_contig100970:3..1671691135155.3143182-CDS-H-fluviatilis_contig100970:3..167Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100970 4..167 +
1622929027.6365938-CDS-H-fluviatilis_contig100970:638..7231622929027.6365938-CDS-H-fluviatilis_contig100970:638..723Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100970 639..723 +
1691135155.324241-CDS-H-fluviatilis_contig100970:638..7231691135155.324241-CDS-H-fluviatilis_contig100970:638..723Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100970 639..723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100970.263.1prot_H-fluviatilis_contig100970.263.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100970 4..723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100970.263.1

>prot_H-fluviatilis_contig100970.263.1 ID=prot_H-fluviatilis_contig100970.263.1|Name=mRNA_H-fluviatilis_contig100970.263.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=83bp
ALAYDGPAFRGMDAGSFSEDDWAFGSESVRVLSGLYGVLKPTDLIQPYRL
EMGSRVGIAGSRDLYTYWADRVTQCLLQDVQEG
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mRNA from alignment at H-fluviatilis_contig100970:4..723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100970.263.1 ID=mRNA_H-fluviatilis_contig100970.263.1|Name=mRNA_H-fluviatilis_contig100970.263.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=720bp|location=Sequence derived from alignment at H-fluviatilis_contig100970:4..723+ (Heribaudiella fluviatilis SAG_13_90)
GCGTTGGCATATGATGGACCGGCGTTCCGAGGCATGGACGCCGGATCGTT TTCAGAGGACGATTGGGCCTTCGGCAGCGAGTCGGTACGGGTGCTGTCCG GCCTGTACGGGGTGCTCAAGCCTACCGACCTTATTCAACCATACCGCCTC GAGATGGGCTCCAGGTAAAACCAGACACTGCCATACCCACCAAGCGGCGG TCGATGGTCGGCAGCCGACACGATCTGTCGTGTTTTATGAATGCAGCAGT ATGACCACCGTAGCAAATTTTGTGCCGAAATCTGTTTGGAATGGCGTGTC CATGCCAGCACTGTCGTGCGCACTACGTTTGCCGGGCGCATCTTTGCAGT GATTAGAAACAATAGCGACAGCACTTATTCACGTGTTTGATCCAAGTTTC TGACTGCCGCCGCCAGGCTCGCACAAAGTGTGCCGTATGGAGGCAAGCGT ATTGGAGCCTTTGACACACGGCGTGGCCAATTGCTTTGCCAAGTAGCCCT TCGCTTTGCCGTATACATACATGTATTCGGTTTGGCTTGGCAGCAATAAA GCTGTCTTATGTAATGCGCTGGCGCCTACTCTGCCCAACAATGTATTTCA CTACAGCCCTACCGCCACGTGTACACTTGCTCTAGGGTGGGTATTGCAGG GAGCAGAGATCTATACACATACTGGGCGGACAGAGTGACGCAATGTCTAC TTCAAGATGTTCAAGAAGGG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100970:4..723+

>mRNA_H-fluviatilis_contig100970.263.1 ID=mRNA_H-fluviatilis_contig100970.263.1|Name=mRNA_H-fluviatilis_contig100970.263.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=498bp|location=Sequence derived from alignment at H-fluviatilis_contig100970:4..723+ (Heribaudiella fluviatilis SAG_13_90)
GCGTTGGCATATGATGGACCGGCGTTCCGAGGCATGGACGCCGGATCGTT
TTCAGAGGACGATTGGGCCTTCGGCAGCGAGTCGGTACGGGTGCTGTCCG
GCCTGTACGGGGTGCTCAAGCCTACCGACCTTATTCAACCATACCGCCTC
GAGATGGGCTCCAGGCGTTGGCATATGATGGACCGGCGTTCCGAGGCATG
GACGCCGGATCGTTTTCAGAGGACGATTGGGCCTTCGGCAGCGAGTCGGT
ACGGGTGCTGTCCGGCCTGTACGGGGTGCTCAAGCCTACCGACCTTATTC
AACCATACCGCCTCGAGATGGGCTCCAGGGTGGGTATTGCAGGGAGCAGA
GATCTATACACATACTGGGCGGACAGAGTGACGCAATGTCTACTTCAAGA
TGTTCAAGAAGGGGGTGGGTATTGCAGGGAGCAGAGATCTATACACATAC
TGGGCGGACAGAGTGACGCAATGTCTACTTCAAGATGTTCAAGAAGGG
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