mRNA_H-fluviatilis_contig1009.249.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig1009.249.1
Unique NamemRNA_H-fluviatilis_contig1009.249.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig1009.249.1 vs. uniprot
Match: D8LF91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.040e-23
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVISLRNLDKDLFEEGVIR 153
            GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVI LRNLDKD FEEGVIR
Sbjct:  391 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVIGLRNLDKDEFEEGVIR 441
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BLAST of mRNA_H-fluviatilis_contig1009.249.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.720e-22
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVISLRNLDKDLFEEGVIR 153
            GTSDPVVYVEAFGQK+ATEVK ACLSCVFDETFVI LRNLDKD FEEGVIR
Sbjct:  448 GTSDPVVYVEAFGQKYATEVKAACLSCVFDETFVIGLRNLDKDEFEEGVIR 498
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BLAST of mRNA_H-fluviatilis_contig1009.249.1 vs. uniprot
Match: D8LF87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.550e-16
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVISLRNLDKDLFEEGVIR 153
            GTSDPVVYVEAFGQKFATEV +  L+ VFDETFVI+LRNLD+D F+EGV R
Sbjct:  688 GTSDPVVYVEAFGQKFATEVVKDRLNAVFDETFVINLRNLDQDDFKEGVFR 738
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BLAST of mRNA_H-fluviatilis_contig1009.249.1 vs. uniprot
Match: A0A6H5L7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.890e-16
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVISLRNLDKDLFEEGVIR 153
            GTSDPVVYVEAFGQKFATEV +  L+ VFDETFVI+LRN+D+D F+EGV R
Sbjct:  758 GTSDPVVYVEAFGQKFATEVVKDRLNAVFDETFVINLRNMDQDDFKEGVFR 808
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BLAST of mRNA_H-fluviatilis_contig1009.249.1 vs. uniprot
Match: A0A7S3JSY6_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSY6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.070e-13
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVISLRNLDKDLFEEGVIR 153
            GTSDPV  +E FG+K  + V   CLSCVFDETF+I+ RNLDKD+F+E  I+
Sbjct:  415 GTSDPVCVIECFGEKRTSSVHNDCLSCVFDETFIINKRNLDKDIFKESSIK 465
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BLAST of mRNA_H-fluviatilis_contig1009.249.1 vs. uniprot
Match: A0A812YP87_SYMMI (Myof protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YP87_SYMMI)

HSP 1 Score: 68.9 bits (167), Expect = 1.830e-12
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVISLRNLDKDLFEEGVIR 153
            G SDPVV + AFG+K ++ V+ A L+CVFDE F+ + RN+DKD+F EGVIR
Sbjct:  120 GLSDPVVTIHAFGEKQSSSVQRASLNCVFDELFIFNFRNMDKDVFSEGVIR 170
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BLAST of mRNA_H-fluviatilis_contig1009.249.1 vs. uniprot
Match: A0A7S3HPR4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPR4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.640e-11
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVISLRNLDKDLFEEGVIR 153
            GTSDPVVYVE FGQK  T   ++  SCV+DE F+ +++NLDK+ F +G++R
Sbjct:  432 GTSDPVVYVECFGQKQNTICVKSVTSCVYDELFIFNMKNLDKETFADGLLR 482
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BLAST of mRNA_H-fluviatilis_contig1009.249.1 vs. uniprot
Match: A0A7S1XRY6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRY6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.100e-10
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVISLRNLDKDLFEEGVI 150
            GTSDPVVYVE  G+K AT V     + VFDE F+I+LRN+DK+ FEE VI
Sbjct:   29 GTSDPVVYVEVLGKKVATSVISKQNNPVFDERFIINLRNVDKEDFEEAVI 78
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BLAST of mRNA_H-fluviatilis_contig1009.249.1 vs. uniprot
Match: A0A2P4XEC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XEC0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.260e-9
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVISLRNLDKDLFEEGVIR 153
            GTSDPVVYVE FG+K  T VK+  LSC +D+  +   RNLDK   E G +R
Sbjct:  392 GTSDPVVYVEVFGEKQQTAVKKQVLSCFWDDLLIFPFRNLDKSEVEMGYVR 442
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BLAST of mRNA_H-fluviatilis_contig1009.249.1 vs. uniprot
Match: A0A0W8D719_PHYNI (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D719_PHYNI)

HSP 1 Score: 60.1 bits (144), Expect = 3.270e-9
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVISLRNLDKDLFEEGVIR 153
            GTSDPVVYVE FG+K  T VK+  LSC +D+  +   RNLDK   E G +R
Sbjct:  392 GTSDPVVYVEVFGEKQQTAVKKQVLSCFWDDLLIFPFRNLDKSEVEMGYVR 442
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1009.249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LF91_ECTSI1.040e-2396.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL55_9PHAE1.720e-2292.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF87_ECTSI1.550e-1678.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7Z1_9PHAE2.890e-1676.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3JSY6_9STRA7.070e-1360.78Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A812YP87_SYMMI1.830e-1258.82Myof protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S3HPR4_9STRA7.640e-1154.90Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1XRY6_9STRA9.100e-1062.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A2P4XEC0_9STRA3.260e-954.90Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A0W8D719_PHYNI3.270e-954.90Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig1009contigH-fluviatilis_contig1009:23329..23484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue8.3e-20
Seed eggNOG ortholog2880.D8LF91
KEGG koko:K19949,ko:K22125,ko:K22127
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.3609278-CDS-H-fluviatilis_contig1009:23328..234841622929025.3609278-CDS-H-fluviatilis_contig1009:23328..23484Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1009 23329..23484 +
1691135154.2473226-CDS-H-fluviatilis_contig1009:23328..234841691135154.2473226-CDS-H-fluviatilis_contig1009:23328..23484Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1009 23329..23484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig1009.249.1prot_H-fluviatilis_contig1009.249.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig1009 23329..23484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig1009.249.1

>prot_H-fluviatilis_contig1009.249.1 ID=prot_H-fluviatilis_contig1009.249.1|Name=mRNA_H-fluviatilis_contig1009.249.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=52bp
GTSDPVVYVEAFGQKFATEVKEACLSCVFDETFVISLRNLDKDLFEEGVI
R*
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mRNA from alignment at H-fluviatilis_contig1009:23329..23484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig1009.249.1 ID=mRNA_H-fluviatilis_contig1009.249.1|Name=mRNA_H-fluviatilis_contig1009.249.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=156bp|location=Sequence derived from alignment at H-fluviatilis_contig1009:23329..23484+ (Heribaudiella fluviatilis SAG_13_90)
GGTACCTCTGACCCGGTGGTGTACGTGGAGGCGTTCGGCCAAAAGTTCGC
AACTGAGGTCAAAGAGGCGTGTCTTAGCTGCGTGTTCGACGAGACTTTCG
TGATCAGTCTGAGAAACTTGGACAAGGACTTGTTTGAAGAGGGTGTGATC
AGGTGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig1009:23329..23484+

>mRNA_H-fluviatilis_contig1009.249.1 ID=mRNA_H-fluviatilis_contig1009.249.1|Name=mRNA_H-fluviatilis_contig1009.249.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=312bp|location=Sequence derived from alignment at H-fluviatilis_contig1009:23329..23484+ (Heribaudiella fluviatilis SAG_13_90)
GGTACCTCTGACCCGGTGGTGTACGTGGAGGCGTTCGGCCAAAAGTTCGC
AACTGAGGTCAAAGAGGCGTGTCTTAGCTGCGTGTTCGACGAGACTTTCG
TGATCAGTCTGAGAAACTTGGACAAGGACTTGTTTGAAGAGGGTGTGATC
AGGTGAGGTACCTCTGACCCGGTGGTGTACGTGGAGGCGTTCGGCCAAAA
GTTCGCAACTGAGGTCAAAGAGGCGTGTCTTAGCTGCGTGTTCGACGAGA
CTTTCGTGATCAGTCTGAGAAACTTGGACAAGGACTTGTTTGAAGAGGGT
GTGATCAGGTGA
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