mRNA_H-fluviatilis_contig1009.248.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig1009.248.1
Unique NamemRNA_H-fluviatilis_contig1009.248.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig1009.248.1 vs. uniprot
Match: D8LF91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 8.180e-9
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  148 MVRLLHVTIYEGEGLLEHKSSYVVAELLDVTGRPIKNER 264
            MVRLLHVTI+EG G+  HK  Y  AELLD+TGRPIK ER
Sbjct:    1 MVRLLHVTIFEGVGVAPHKEPYACAELLDITGRPIKKER 39
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BLAST of mRNA_H-fluviatilis_contig1009.248.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.210e-9
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  148 MVRLLHVTIYEGEGLLEHKSSYVVAELLDVTGRPIKNER 264
            MVRLLHVTI+EG G+  HK  Y  AELLD+TGRPIK ER
Sbjct:    1 MVRLLHVTIFEGVGVAPHKEPYACAELLDITGRPIKKER 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1009.248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF91_ECTSI8.180e-971.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL55_9PHAE8.210e-971.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig1009contigH-fluviatilis_contig1009:13371..16216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.6e-07
Seed eggNOG ortholog2880.D8LF91
KEGG koko:K19949,ko:K22125,ko:K22127
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.1217306-CDS-H-fluviatilis_contig1009:13370..134321622929025.1217306-CDS-H-fluviatilis_contig1009:13370..13432Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1009 13371..13432 +
1691135154.1476693-CDS-H-fluviatilis_contig1009:13370..134321691135154.1476693-CDS-H-fluviatilis_contig1009:13370..13432Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1009 13371..13432 +
1622929025.1383686-CDS-H-fluviatilis_contig1009:16009..162141622929025.1383686-CDS-H-fluviatilis_contig1009:16009..16214Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1009 16010..16214 +
1691135154.159861-CDS-H-fluviatilis_contig1009:16009..162141691135154.159861-CDS-H-fluviatilis_contig1009:16009..16214Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1009 16010..16214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig1009.248.1prot_H-fluviatilis_contig1009.248.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig1009 13371..16214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig1009.248.1

>prot_H-fluviatilis_contig1009.248.1 ID=prot_H-fluviatilis_contig1009.248.1|Name=mRNA_H-fluviatilis_contig1009.248.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=89bp
LRQFPGEPNQPNIPSGGLQYRITPDFVARRLTETVLSEGRRWPGAAAHIM
VRLLHVTIYEGEGLLEHKSSYVVAELLDVTGRPIKNERA
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mRNA from alignment at H-fluviatilis_contig1009:13371..16216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig1009.248.1 ID=mRNA_H-fluviatilis_contig1009.248.1|Name=mRNA_H-fluviatilis_contig1009.248.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=2846bp|location=Sequence derived from alignment at H-fluviatilis_contig1009:13371..16216+ (Heribaudiella fluviatilis SAG_13_90)
CTGCGGCAATTTCCTGGTGAACCCAACCAACCGAACATCCCCTCGGGTGG
GCTACAGTACAGGTATTCTGCTTGCCTTTTTTGGGTTTCTCCTTCCCCTA
GAGGCCAGACGTTCCGACCGGTAGAATATTTCTGTCCGTGTTTTCGCTTA
TGTCCTGGTTGAAACAGGAATACGGTACATGCAGATAGTGTTACCCCTTC
CCGCTCTGTGGGGTACTGTTCCATTGCGACGGGCACGCCGTGAAGACTCC
GTGGCCTTTATCCTCGTCTCCCCTTGTCGCAAGCAGCGGTAGTTTCACCA
ACATTGGCCCGTGTGAACGACGCAACAGACGCAACAGTACTAGCAGTAGT
ACGCTGCAGACGTACGGACTGGGCAGGACAGATATGAAATACAAAAATGT
AACTCCAAATATTTCTTTTTTGGTGCTGTTCAATGTGTCGGCCGCGACCC
GCGACGGGCCGGTAACGCAAAATGTATGTTTTCACATAGCATGTGTTTGG
TGCCCAAGTGTTGATAGTATCATAAATACGTTTGCGGAACTCATCGGGTT
GACCGCTGTGCTATTTTTTCCTGTCCATGGGCGGCAGTGTTTTGCAGTTA
CTCCGTGGTACAGTAGTAGGACTGGTTGTGACGTTTATGGGAGTGATCTG
ATGTATACATGTACGTGCCGTGGTCGTCCCACGATGCGGGCATGGACATT
CAACGATCAAAGCAGTTCCAACATGAGTCATTGAGATTGCGCGTGAAATT
TGCGAAGCAGAATTACCTCGCGTTGTTTATGAAATCTGAGGGCTCTCCTC
GCGCTAGCTCTAGGTTGCATGCCGTTTGTCCCTTTCTATGTCACCGAACA
GCACAGTGTCCTGTCTGCAATCTGCAGCGCAATTCCCTTAAGTAGCTAGC
ACGTTCAACCTCTCGACGGTTTTCAATTAACGGAACTCGTGCCCCCCTAC
ATGGACAGGCAAATACATGGTTGATGGTGTTTATACTTCGTTTTGAATGT
TCTTGCCACCCAACCCTGAAGCCTAACCCACACCCCACACACAACGTCCC
TAGGCCCCTACAGTACGGTAGCCGGGTCGCAAACGGCCCCTGCGGTGCTT
TTCTCGAGCGAAACGTGCGTTCGGGTCAAAGGGCGGGACTACTCCAAGGG
TTAGGGCAAAAAATCTGCGAACTTCGCCGATGGCATAGGGTTCATGAAGT
CTGTGTAAAGGTTTTGTGAAGTCAATCATGCGTGTCGTTATGGTTTTCGA
CAGTTGGAAAGCACGTGATCGCCTCGAGCGACAAACGCCCGCAAGACACT
CTAGGGCTCGTGTTTGGGATTAAATTTAGGTTTCATTCGTGATCGCGGTG
GGGTCCGGGTCGGAGTCGGGGTTGGGGTCGGGCCCGGGGCCGGGCCCGGG
GCCGGGGCCAGGATCTGCTCGCGACAGAAGCGTGAACAGTAAGAAACATC
AACACATTTCTGTCCAACAACTTTTTACGATTGGTGTCGCCCCCATTTTC
ACGGGCAAACTGCATGCACATGGGCGAAAATCGGTTTTTTATTTTGCATG
CAATGGGTAATATCCGACCGCATCTTGGGCACTGTCATGCCTGCAATATT
TGAGTCCAAGGGTGAGCAAGCCACCGTATACAGTCAATTCAACATGGCCA
ACACAGCTTTATCGTGATCTGCGGGTAGTTTTACTCCTGCGATCATGAAG
CTATGCACGCATAGTCTATCAATCCCTTTCTGTTCGCCGCCGCCGCCGCC
GCCGGAGGGTTTGTCTTCGTAATACACGTGCACTTGGGGTGCATAGCTTT
GGCATCTTTTCAGTTGTCGGTCTGTTTCGAAAGTGTGTCGCGCTATGCGG
TGCTTTGTGCAGTAAAGCGCGACGCTTTGCAGACAGAACGCCACTTGAAG
CCGCCGCGGTTTGTCAAGACTCGGGATATGTGTTACCTCAACGTTTGCTG
CCATGTGCTACGCAGAATATCTTAATTGTCTGCTGTACGCCTGTACAACA
CGGACGGATACAGAATGCATCCAAAGCTTATGACGCAGTGGTACCGTCTG
AACGGCTCGCCAAGAATGAAGGTTGGGATTGATTGTGTCGATGGCAGATG
GGGAGGATTGGCGTGGCCTTTGTCACGATAGGCGTGTGTGTGGCGTGCTG
GTGAAAGCTTTCATGGTCGATTCGAAAGAAATCAGCTCTTACCATGAAGA
GCAAGGAACCGCTACAGTACACGGTATGGTGGTTGAGAAACCACGGTTTC
TGTCGGAAAATCAGACGCAGCAAAATGTATGAGAGCGACCCAGACAAGCA
ACAGCCTCGTAGACTCCCCGTGTCTGTTCCCGACTGCATAGTTCTTCGTG
GCATTCCCCTTTGCTCACGTTCCACTCGTCCAGTGTCCTCCCTCCATTCA
CATACAGTATATTCTCCCCTTCCCCTTCGATCGTAATGTGGACGAAAGAA
AAGAGCACAGCTAAGCGGTACTAGATTTTTCTGGTTGCGGACGTCGGAGT
AGCAGAGACAAAGCCGCAACGAAAACACGCCTGACATGTATTGTCTAGGA
CGAAGGACACCTTTTGTTTTGCACGGACTTATTGGCTTGCGACGTTCGAC
GCTATCGACACTGACCGCGTGTTTTATCCTTGCCGGCAGGATCACTCCCG
ATTTTGTCGCTCGTCGGCTGACGGAAACCGTTCTTAGCGAGGGTAGGCGG
TGGCCGGGCGCGGCCGCACACATCATGGTTCGGCTGCTTCATGTGACGAT
ATACGAAGGCGAGGGTCTCCTCGAGCACAAGAGCTCGTACGTGGTCGCTG
AGTTGCTCGATGTCACCGGCCGTCCCATCAAGAACGAGCGTGCTAA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig1009:13371..16216+

>mRNA_H-fluviatilis_contig1009.248.1 ID=mRNA_H-fluviatilis_contig1009.248.1|Name=mRNA_H-fluviatilis_contig1009.248.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=534bp|location=Sequence derived from alignment at H-fluviatilis_contig1009:13371..16216+ (Heribaudiella fluviatilis SAG_13_90)
CTGCGGCAATTTCCTGGTGAACCCAACCAACCGAACATCCCCTCGGGTGG
GCTACAGTACAGCTGCGGCAATTTCCTGGTGAACCCAACCAACCGAACAT
CCCCTCGGGTGGGCTACAGTACAGGATCACTCCCGATTTTGTCGCTCGTC
GGCTGACGGAAACCGTTCTTAGCGAGGGTAGGCGGTGGCCGGGCGCGGCC
GCACACATCATGGTTCGGCTGCTTCATGTGACGATATACGAAGGCGAGGG
TCTCCTCGAGCACAAGAGCTCGTACGTGGTCGCTGAGTTGCTCGATGTCA
CCGGCCGTCCCATCAAGAACGAGCGTGCTGATCACTCCCGATTTTGTCGC
TCGTCGGCTGACGGAAACCGTTCTTAGCGAGGGTAGGCGGTGGCCGGGCG
CGGCCGCACACATCATGGTTCGGCTGCTTCATGTGACGATATACGAAGGC
GAGGGTCTCCTCGAGCACAAGAGCTCGTACGTGGTCGCTGAGTTGCTCGA
TGTCACCGGCCGTCCCATCAAGAACGAGCGTGCT
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