mRNA_H-fluviatilis_contig100143.87.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100143.87.1
Unique NamemRNA_H-fluviatilis_contig100143.87.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100143.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100143contigH-fluviatilis_contig100143:548..862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.9953067-CDS-H-fluviatilis_contig100143:548..6021622928997.9953067-CDS-H-fluviatilis_contig100143:548..602Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100143 549..602 -
1691135144.7541702-CDS-H-fluviatilis_contig100143:548..6021691135144.7541702-CDS-H-fluviatilis_contig100143:548..602Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100143 549..602 -
1622928998.0096147-CDS-H-fluviatilis_contig100143:649..8621622928998.0096147-CDS-H-fluviatilis_contig100143:649..862Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100143 650..862 -
1691135144.7648032-CDS-H-fluviatilis_contig100143:649..8621691135144.7648032-CDS-H-fluviatilis_contig100143:649..862Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100143 650..862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100143.87.1prot_H-fluviatilis_contig100143.87.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100143 549..862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100143.87.1

>prot_H-fluviatilis_contig100143.87.1 ID=prot_H-fluviatilis_contig100143.87.1|Name=mRNA_H-fluviatilis_contig100143.87.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=89bp
DGDRIVGGAAAWLRELGLTLQVVHVEGELDHPTKRARELARLPPVLPARL
RSPFLAGRKAPFANSWGYFLGERLKTQGFRELTAEDRKV
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mRNA from alignment at H-fluviatilis_contig100143:548..862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100143.87.1 ID=mRNA_H-fluviatilis_contig100143.87.1|Name=mRNA_H-fluviatilis_contig100143.87.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=315bp|location=Sequence derived from alignment at H-fluviatilis_contig100143:548..862- (Heribaudiella fluviatilis SAG_13_90)
GATGGAGACCGCATCGTGGGTGGTGCGGCGGCTTGGCTGCGCGAGCTCGG
ACTGACCCTGCAAGTGGTACACGTCGAGGGCGAGCTCGACCACCCCACCA
AACGCGCGCGTGAGCTGGCGCGCCTCCCGCCGGTGCTCCCTGCGCGGCTC
CGCTCGCCTTTCTTGGCAGGCCGGAAGGCTCCTTTCGCAAACTCGTGGGG
CTACTTCTTGGGGGTACTGCGAACCTTTGCCCTTGCCCTCTACACAGCTC
TGTTGTCCAGGAGCGGCTCAAGACACAGGGTTTCCGCGAGTTAACAGCCG
AAGACAGGAAGGTCT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100143:548..862-

>mRNA_H-fluviatilis_contig100143.87.1 ID=mRNA_H-fluviatilis_contig100143.87.1|Name=mRNA_H-fluviatilis_contig100143.87.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=534bp|location=Sequence derived from alignment at H-fluviatilis_contig100143:548..862- (Heribaudiella fluviatilis SAG_13_90)
GATGGAGACCGCATCGTGGGTGGTGCGGCGGCTTGGCTGCGCGAGCTCGG
ACTGACCCTGCAAGTGGTACACGTCGAGGGCGAGCTCGACCACCCCACCA
AACGCGCGCGTGAGCTGGCGCGCCTCCCGCCGGTGCTCCCTGCGCGGCTC
CGCTCGCCTTTCTTGGCAGGCCGGAAGGCTCCTTTCGCAAACTCGTGGGG
CTACTTCTTGGGGGATGGAGACCGCATCGTGGGTGGTGCGGCGGCTTGGC
TGCGCGAGCTCGGACTGACCCTGCAAGTGGTACACGTCGAGGGCGAGCTC
GACCACCCCACCAAACGCGCGCGTGAGCTGGCGCGCCTCCCGCCGGTGCT
CCCTGCGCGGCTCCGCTCGCCTTTCTTGGCAGGCCGGAAGGCTCCTTTCG
CAAACTCGTGGGGCTACTTCTTGGGGGAGCGGCTCAAGACACAGGGTTTC
CGCGAGTTAACAGCCGAAGACAGGAAGGTCGAGCGGCTCAAGACACAGGG
TTTCCGCGAGTTAACAGCCGAAGACAGGAAGGTC
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