mRNA_H-fluviatilis_contig100099.78.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100099.78.1
Unique NamemRNA_H-fluviatilis_contig100099.78.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100099.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100099contigH-fluviatilis_contig100099:158..574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size318
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100099.78.1prot_H-fluviatilis_contig100099.78.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100099 158..561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.98937-CDS-H-fluviatilis_contig100099:157..2511622928996.98937-CDS-H-fluviatilis_contig100099:157..251Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100099 158..251 -
1691135144.107723-CDS-H-fluviatilis_contig100099:157..2511691135144.107723-CDS-H-fluviatilis_contig100099:157..251Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100099 158..251 -
1622928997.0025563-CDS-H-fluviatilis_contig100099:294..3931622928997.0025563-CDS-H-fluviatilis_contig100099:294..393Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100099 295..393 -
1691135144.1215682-CDS-H-fluviatilis_contig100099:294..3931691135144.1215682-CDS-H-fluviatilis_contig100099:294..393Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100099 295..393 -
1622928997.0164096-CDS-H-fluviatilis_contig100099:451..5611622928997.0164096-CDS-H-fluviatilis_contig100099:451..561Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100099 452..561 -
1691135144.1408446-CDS-H-fluviatilis_contig100099:451..5611691135144.1408446-CDS-H-fluviatilis_contig100099:451..561Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100099 452..561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.0379858-UTR-H-fluviatilis_contig100099:561..5741622928997.0379858-UTR-H-fluviatilis_contig100099:561..574Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100099 562..574 -
1691135144.1522305-UTR-H-fluviatilis_contig100099:561..5741691135144.1522305-UTR-H-fluviatilis_contig100099:561..574Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100099 562..574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100099.78.1

>prot_H-fluviatilis_contig100099.78.1 ID=prot_H-fluviatilis_contig100099.78.1|Name=mRNA_H-fluviatilis_contig100099.78.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=101bp
MADGEGTRTHTKEETDDKVSSASLTPVSSGSIASVAGASGESSTADAADK
PKAVNLCGWLKKRTNKTIKGLGIYKRRFVVLREGLLLYYDDEQPVAPTVK
A
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mRNA from alignment at H-fluviatilis_contig100099:158..574-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100099.78.1 ID=mRNA_H-fluviatilis_contig100099.78.1|Name=mRNA_H-fluviatilis_contig100099.78.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=417bp|location=Sequence derived from alignment at H-fluviatilis_contig100099:158..574- (Heribaudiella fluviatilis SAG_13_90)
CAGCGGTTATTTAATGGCTGATGGCGAAGGGACACGAACCCACACGAAGG
AAGAGACTGATGACAAAGTCTCTTCTGCGTCCCTGACCCCGGTGTCTTCT
GGGTCAATAGCTTCCGTAGCAGGGTATGCGTGCCACCTCCCAGTTGATCG
TCATTCGCACTAACGCTTGCCCCATGCTCAGAGCCAGCGGCGAATCATCG
ACTGCCGATGCAGCAGACAAGCCAAAAGCAGTCAACCTGTGCGGATGGCT
CAAGAAGCGGACCAACAAAACCATCAAAGGGTACTGCCAGAGCGGTGACG
TGGGACACCCGGTGCCTTTCCAGATTGGGCATTTACAAGCGTCGGTTTGT
GGTGTTGCGCGAGGGATTGCTGCTGTACTACGACGACGAGCAGCCCGTGG
CACCGACAGTGAAGGCC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100099:158..574-

>mRNA_H-fluviatilis_contig100099.78.1 ID=mRNA_H-fluviatilis_contig100099.78.1|Name=mRNA_H-fluviatilis_contig100099.78.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=606bp|location=Sequence derived from alignment at H-fluviatilis_contig100099:158..574- (Heribaudiella fluviatilis SAG_13_90)
ATGGCTGATGGCGAAGGGACACGAACCCACACGAAGGAAGAGACTGATGA
CAAAGTCTCTTCTGCGTCCCTGACCCCGGTGTCTTCTGGGTCAATAGCTT
CCGTAGCAGGATGGCTGATGGCGAAGGGACACGAACCCACACGAAGGAAG
AGACTGATGACAAAGTCTCTTCTGCGTCCCTGACCCCGGTGTCTTCTGGG
TCAATAGCTTCCGTAGCAGGAGCCAGCGGCGAATCATCGACTGCCGATGC
AGCAGACAAGCCAAAAGCAGTCAACCTGTGCGGATGGCTCAAGAAGCGGA
CCAACAAAACCATCAAAGGAGCCAGCGGCGAATCATCGACTGCCGATGCA
GCAGACAAGCCAAAAGCAGTCAACCTGTGCGGATGGCTCAAGAAGCGGAC
CAACAAAACCATCAAAGGATTGGGCATTTACAAGCGTCGGTTTGTGGTGT
TGCGCGAGGGATTGCTGCTGTACTACGACGACGAGCAGCCCGTGGCACCG
ACAGTGAAGGCCATTGGGCATTTACAAGCGTCGGTTTGTGGTGTTGCGCG
AGGGATTGCTGCTGTACTACGACGACGAGCAGCCCGTGGCACCGACAGTG
AAGGCC
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