mRNA_H-fluviatilis_contig10007.76.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10007.76.1
Unique NamemRNA_H-fluviatilis_contig10007.76.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10007.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10007contigH-fluviatilis_contig10007:2494..7162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1787
Cds size1632
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10007.76.1prot_H-fluviatilis_contig10007.76.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10007 2494..7007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.7869763-CDS-H-fluviatilis_contig10007:2493..29671622928996.7869763-CDS-H-fluviatilis_contig10007:2493..2967Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10007 2494..2967 -
1691135144.00809-CDS-H-fluviatilis_contig10007:2493..29671691135144.00809-CDS-H-fluviatilis_contig10007:2493..2967Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10007 2494..2967 -
1622928996.8074193-CDS-H-fluviatilis_contig10007:3292..40871622928996.8074193-CDS-H-fluviatilis_contig10007:3292..4087Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10007 3293..4087 -
1691135144.0160744-CDS-H-fluviatilis_contig10007:3292..40871691135144.0160744-CDS-H-fluviatilis_contig10007:3292..4087Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10007 3293..4087 -
1622928996.82501-CDS-H-fluviatilis_contig10007:4821..50221622928996.82501-CDS-H-fluviatilis_contig10007:4821..5022Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10007 4822..5022 -
1691135144.0275662-CDS-H-fluviatilis_contig10007:4821..50221691135144.0275662-CDS-H-fluviatilis_contig10007:4821..5022Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10007 4822..5022 -
1622928996.8556476-CDS-H-fluviatilis_contig10007:6845..70071622928996.8556476-CDS-H-fluviatilis_contig10007:6845..7007Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10007 6846..7007 -
1691135144.0504277-CDS-H-fluviatilis_contig10007:6845..70071691135144.0504277-CDS-H-fluviatilis_contig10007:6845..7007Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10007 6846..7007 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.8664877-UTR-H-fluviatilis_contig10007:7007..71621622928996.8664877-UTR-H-fluviatilis_contig10007:7007..7162Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10007 7008..7162 -
1691135144.0750492-UTR-H-fluviatilis_contig10007:7007..71621691135144.0750492-UTR-H-fluviatilis_contig10007:7007..7162Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10007 7008..7162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10007.76.1

>prot_H-fluviatilis_contig10007.76.1 ID=prot_H-fluviatilis_contig10007.76.1|Name=mRNA_H-fluviatilis_contig10007.76.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=544bp
MEKRIPEEERVEPSVPSKALLPGLPTRFKLGQRVIVLGRDAEGGTIYRTA
TVSTVESLAVGEGGGSIENWRNGKGSSNRSAAATRTTLKVRFWGAGKDMP
DEVVDERDVFERTEECLRLKKEYDVRSRRKLYARASAVRSSAAIDAFHSP
PPTAARRADQSGMSPPPAPGPYSLVSSTSPGTSFPPPLGLGLGGPIAGNR
YGKKRKLWYMETSPSPGSQGMAASNHGDADGDDAANMARAGVGSPSSAGP
AARVTGWAARGGGESAASGVCMAAAAVSSLPGTPRVREEGRTRPKHDTSA
PKKDKRSLNPSTGDTERQAGTGAMEGRHPPYADMAVEAVQALGQSRGSSL
SAVAIWIRNSRYGALLVNAGASAKEFKATVSVGVKQALVQGKLVKNRTNY
RVSAEHAEELARRQASSSDNDGRLDPSSFPPGQPGGGSAAGASAASTTAA
VAVEVRIDPEERPPSAAAVPQSHGVTFSPRDEHRYASNGEAIDDTFTAIN
AAEGKGDDRGRRYESEDIVHSSVGKASTGGAMDLDSGRGRGRGR
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mRNA from alignment at H-fluviatilis_contig10007:2494..7162-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10007.76.1 ID=mRNA_H-fluviatilis_contig10007.76.1|Name=mRNA_H-fluviatilis_contig10007.76.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=4669bp|location=Sequence derived from alignment at H-fluviatilis_contig10007:2494..7162- (Heribaudiella fluviatilis SAG_13_90)
GGGTGTAAATCCCCCGCGCGCCTGGCGCGCATCAAAGCTGACGATCAAGC AATTACCATCATCATCAGCAGAGAAGGGGAGAGCGAGACAACGGAACGGT TCTCCAATTGTCACCAGACAGGCGATACACGGCAACGCTGAAGTCTGTGA TTGTCATGGAGAAGCGTATACCTGAGGAGGAACGAGTAGAGCCTAGTGTT CCATCAAAAGCGTTGTTGCCGGGGTTGCCGACGAGGTTTAAGCTAGGGCA GCGTGTGATAGTGCTAGGGAGAGATGCTGAAGGCGGGACGATATACCGGA CGGCGACGGTGTCAACGGTGAGAAAAGCTGTTGAGAGTTCTGTTCTGTGC CCGACTGTCGGCGTTAGTTTTTATCGGAACACGTCCACGAGCAAAAAAAC GTAGATCGCAGTGCAGCAACTGGTCCGTGATTACTCAGTTCAGAAACGTT TGCGTTTACGTTTTTTTTCACAAGTGCGTGCTTTTACTTGCACGGAAACG GTTGCTAGCCAGATAGTGGGGCGGAAACACGCTATAGGATGTGGTGTTGA AACTATGCTGGCGTGGTGAGGTAGACTCTATTTATTCTTTCATATAACTG TTGCGCTCATTGAACTGTACTGTTCGTACTATAGGAGTCTACCTGAAAGG GTAGCAAAACGTACAGTAGTTGAGCTGACATGTTTTTTCTGGTCAAGCAG ATAAGGGCTGCTATTTTTTTTTGGACTGTGATTGGGGCGGGAACACGCTA TAATATGTGGTGTTCAGACGGTGCTGGCTTCAGGCGAGGCAGACAATTCT TCTTCGTAACTTCTGTTGTTCATTGCACTGCACTGTTTGTACTGTGGAAG CCCCCCTGAAAGGCACAAATCATAGAGTAGTCGAGATGGCATGTTAATGC AAGTTGGTTGATGACGAACATGTATCTTACATGTCACATCAACGACATAC GGACTGGCATGACTCGGGGAAAACAACCACGAGTGTAATCAGACAGCGCT TGGTGCGGAGTCCATGCGCTGTTGTGCCCGTGGTGTTCCACTTTTGGTTG GAGAGAGATGTGAAATCGCGCAAGCGCTGTATGTGTTCGTTGGCGGCGTC GGGAGTGGAACAAAAGGTGGCGCTATTTGGCAGGGGTCATTTGGGGAACA ACAAACGACGGTGAAAAAATCCGACCAGCGCAGGTAGCCAGTACCCGTTG GAGCGGAGGACTGCGGGCACACCCTTGTCGCATGTTCTTGAGTATTTTCA ACGCGCTGCAGATGTAATGGTGCGTACGGCACAGATTTCGTTCTCCTTCT TTGTAAGTTTGTCGTACGATTAATGGCGCGGCTCACTTTTTACTGATAGC GTCCCCACGGGTTACTACATGCCGTCTTGGAGTCTTGGGGTACTTTGAAA CATTGCTACCGTTCTCCCGCTGCTGGGCTTGAATCAAGTAGATCCTTGAG TTTACAGCACCCATGGTTGAGCGTAACTCGCTGGAATCCCATAATTGTAC ATCACGGAAACAATTCTTTCGCCCAGTTGACACGATTTCCATCTTTTTTC TACGCACCTCGTTTTGCCGTTCGTGGGCCAAACCGACAGAAACACGCTCT GCACTCTGCTCCCTCAGAGCTATACAAAAAGCGCTCAGTCACCTGCATAA TGTCGAAGTTCGCTCACCCCACCCCCCCCGCCCCCCCCGTCTCCCCGCTG TCGTCTCATGTGGAGCCTGACAGCCTCCGCCACACACAATCGCGATCAGC CCAAAAAGAGCCATTTTGTTTCCGGGAAGAGCGTGTTTCGCCTGTGCTTT TGCCTGGGATTTTTCACGCCCTGTCCTGCACTCGGCCTCTCCGTGTGACA CCCAGCTATTACGACCGCCCGGCGATGTTGTGGACTCGATCCCCAGATTC ACACTAAACATACCGCAAATCTGCGTATAGTGAGTGGGCACATTTGTAAT TTTTCGAAAGCACCGGTGTGCCAACGGCAGGGTAGGAGTGCGATGGACTA ATGTTGTCCGCGGGAGATAAACTGTCCGCGGGAGATAGACTCTTTTTCTT TCGTCTTTTCGTGCATTTCTTCAGATGTTCACGGTGTGTGTGCTTTATCT TTCTATTTCTCCTTTTTGGCCGCGCGGCCCTCTCTGACAGGTGGAGAGCC TTGCCGTTGGGGAGGGTGGTGGGAGCATTGAGAATTGGCGTAATGGCAAG GGTAGCAGCAATAGATCAGCGGCGGCAACAAGGACGACTCTGAAGGTCCG CTTCTGGGGAGCAGGGAAAGACATGCCGGACGAGGTGGTGGATGAGCGAG ATGTTTTCGAGAGGACCGAGGAATGCCTCAGGTTGAAGAAGGTCAGTTTG CGGGACAAAAAGTATGCTGATGCGGATTTTGGCGGGTTGTTCCATGATAA TTACGAGTAGAGGCTAGGTTTGTTGGAAAATGATGGAGGTCGGCTGAATT GTCAGTTTTTTCGTTTCTGTTGCGGAAGATTTGACCGGAGAATATTACAG GATACCGATGAGCGTTGATTTTCATTGGGGGGTCGGTTGACGTCGTGTGT CGGTAGCTGCGACAGCACTGCTTCCGCTACTCTCAACCGCTATTTGTACT GAGTTATCATTGGGGTATCGTATATCTGTGACCGAGCAGAACACCTCAAC GACTGCATTCCGGACCTTGAACGGCGGGTGTCCGCGGATGGGTTAATTTC AGTGTGAATACTGTGGTGTCAGCCGATATCGGCGGGTGCACTGTCCTTCT TCGTTGCCAGCAGCCCTCCTTTCCACCTGTATACCTCAGGCACTGGAGCA ATATAGGCCAAGTCGGGTGCTTTGTTATTCTGCAGTTGACGACCGCATCG TGTCTTCCTTCTCGGCACCATGGTATACGGCGGTCTTGTACATATCTGAT ATCGTGGTTGTCTCAGGATACCGTCAAGTCCATTGTACAAACCTGGTGTA TGCTCGCCTCTGCTTTTACTCTGTCCGAGCTGTGCAAAAGATTCAACAAG TGAGCCTCCGACTGTTTGCGCCTCTTCTCTCTCCATGCACGTATTGACTC GACTTATCTCGCCACAACCTCTCAGGAGTACGATGTGCGGTCACGACGGA AACTCTACGCACGCGCTTCCGCGGTGCGCTCGTCCGCAGCCATAGACGCT TTCCACTCACCACCACCAACTGCCGCGCGGCGCGCTGATCAGTCGGGAAT GTCCCCACCGCCGGCACCGGGGCCATATTCTCTCGTCTCCTCTACCTCCC CGGGAACGAGCTTCCCCCCACCCCTAGGCTTGGGGTTAGGAGGGCCCATC GCCGGAAACCGCTACGGCAAAAAGCGCAAGCTGTGGTATATGGAAACGTC CCCATCGCCCGGTTCACAAGGAATGGCTGCGTCTAATCATGGTGATGCTG ATGGAGACGATGCTGCAAATATGGCGAGAGCGGGTGTGGGCTCGCCAAGT TCCGCAGGGCCAGCAGCGAGAGTGACGGGATGGGCGGCCCGCGGCGGGGG GGAGTCAGCAGCATCGGGAGTCTGCATGGCAGCGGCAGCGGTGTCATCAC TGCCAGGGACGCCTAGGGTTAGGGAAGAAGGGCGTACACGTCCGAAGCAC GATACGAGTGCCCCGAAGAAAGACAAACGTTCCCTTAACCCAAGCACCGG TGACACTGAACGTCAGGCGGGTACAGGTGCAATGGAAGGGAGGCATCCGC CGTACGCCGACATGGCTGTGGAAGCGGTGCAGGCGTTAGGGCAATCGAGG GGTTCGAGTCTTTCGGCCGTGGCGATATGGATTCGAAACAGCCGCTATGG AGCCCTCTTGGTGAACGCTGGGGCTTCGGCGAAGGAATTCAAGGCTACTG TTTCTGTCGGCGTGAAGCAGGCAAGCCTCGCGTGTTATGTTGGTTTTCTT TTCTTAGAAGGCTTATTGTAAGGCGCCTGTCGCAATTGTTTCTTTTGCGC GACAATTTATTCCTAAATTTGTGAGAACGTCCGGTTCTTGTGTTGTCTCG GCTTATTCCTTACAAACAATCCCAATGTTGTTGAGCGCGGCGGTCACGAA GCGAGAAGGGTGACTTGGTGAGGGGACTTTTACGGTACATTTTGTACAGG CGGTTTGTCACCCTTCCTTGCCGCGTTTTGCACATCAGTGGTGGTTTTGC CCCTCTCGTTGACGCTGGCTCTGTATGCTTTAAATGCTCCAACAGGCGCT TGTCCAAGGGAAGCTGGTCAAGAACCGCACCAACTACCGAGTCTCCGCCG AGCACGCCGAGGAGCTCGCCCGAAGGCAGGCCAGTAGTAGTGACAACGAC GGCCGCCTAGATCCCTCCTCCTTTCCTCCAGGACAACCTGGTGGCGGTAG CGCTGCTGGTGCTTCCGCTGCTTCTACTACTGCTGCTGTTGCTGTCGAAG TCCGAATAGATCCCGAGGAGCGTCCACCGTCTGCGGCAGCGGTTCCTCAG TCGCATGGCGTCACGTTTTCCCCACGCGATGAGCATCGATATGCTAGTAA TGGGGAGGCGATCGATGATACCTTTACGGCAATAAACGCTGCCGAAGGAA AGGGAGACGACCGAGGACGGAGATACGAGTCTGAAGATATTGTGCATAGT AGTGTTGGCAAGGCGAGTACGGGCGGTGCAATGGACCTTGACAGCGGGCG AGGAAGGGGGCGCGGGCGC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10007:2494..7162-

>mRNA_H-fluviatilis_contig10007.76.1 ID=mRNA_H-fluviatilis_contig10007.76.1|Name=mRNA_H-fluviatilis_contig10007.76.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=3264bp|location=Sequence derived from alignment at H-fluviatilis_contig10007:2494..7162- (Heribaudiella fluviatilis SAG_13_90)
ATGGAGAAGCGTATACCTGAGGAGGAACGAGTAGAGCCTAGTGTTCCATC
AAAAGCGTTGTTGCCGGGGTTGCCGACGAGGTTTAAGCTAGGGCAGCGTG
TGATAGTGCTAGGGAGAGATGCTGAAGGCGGGACGATATACCGGACGGCG
ACGGTGTCAACGATGGAGAAGCGTATACCTGAGGAGGAACGAGTAGAGCC
TAGTGTTCCATCAAAAGCGTTGTTGCCGGGGTTGCCGACGAGGTTTAAGC
TAGGGCAGCGTGTGATAGTGCTAGGGAGAGATGCTGAAGGCGGGACGATA
TACCGGACGGCGACGGTGTCAACGGTGGAGAGCCTTGCCGTTGGGGAGGG
TGGTGGGAGCATTGAGAATTGGCGTAATGGCAAGGGTAGCAGCAATAGAT
CAGCGGCGGCAACAAGGACGACTCTGAAGGTCCGCTTCTGGGGAGCAGGG
AAAGACATGCCGGACGAGGTGGTGGATGAGCGAGATGTTTTCGAGAGGAC
CGAGGAATGCCTCAGGTTGAAGAAGGTGGAGAGCCTTGCCGTTGGGGAGG
GTGGTGGGAGCATTGAGAATTGGCGTAATGGCAAGGGTAGCAGCAATAGA
TCAGCGGCGGCAACAAGGACGACTCTGAAGGTCCGCTTCTGGGGAGCAGG
GAAAGACATGCCGGACGAGGTGGTGGATGAGCGAGATGTTTTCGAGAGGA
CCGAGGAATGCCTCAGGTTGAAGAAGGAGTACGATGTGCGGTCACGACGG
AAACTCTACGCACGCGCTTCCGCGGTGCGCTCGTCCGCAGCCATAGACGC
TTTCCACTCACCACCACCAACTGCCGCGCGGCGCGCTGATCAGTCGGGAA
TGTCCCCACCGCCGGCACCGGGGCCATATTCTCTCGTCTCCTCTACCTCC
CCGGGAACGAGCTTCCCCCCACCCCTAGGCTTGGGGTTAGGAGGGCCCAT
CGCCGGAAACCGCTACGGCAAAAAGCGCAAGCTGTGGTATATGGAAACGT
CCCCATCGCCCGGTTCACAAGGAATGGCTGCGTCTAATCATGGTGATGCT
GATGGAGACGATGCTGCAAATATGGCGAGAGCGGGTGTGGGCTCGCCAAG
TTCCGCAGGGCCAGCAGCGAGAGTGACGGGATGGGCGGCCCGCGGCGGGG
GGGAGTCAGCAGCATCGGGAGTCTGCATGGCAGCGGCAGCGGTGTCATCA
CTGCCAGGGACGCCTAGGGTTAGGGAAGAAGGGCGTACACGTCCGAAGCA
CGATACGAGTGCCCCGAAGAAAGACAAACGTTCCCTTAACCCAAGCACCG
GTGACACTGAACGTCAGGCGGGTACAGGTGCAATGGAAGGGAGGCATCCG
CCGTACGCCGACATGGCTGTGGAAGCGGTGCAGGCGTTAGGGCAATCGAG
GGGTTCGAGTCTTTCGGCCGTGGCGATATGGATTCGAAACAGCCGCTATG
GAGCCCTCTTGGTGAACGCTGGGGCTTCGGCGAAGGAATTCAAGGCTACT
GTTTCTGTCGGCGTGAAGCAGGAGTACGATGTGCGGTCACGACGGAAACT
CTACGCACGCGCTTCCGCGGTGCGCTCGTCCGCAGCCATAGACGCTTTCC
ACTCACCACCACCAACTGCCGCGCGGCGCGCTGATCAGTCGGGAATGTCC
CCACCGCCGGCACCGGGGCCATATTCTCTCGTCTCCTCTACCTCCCCGGG
AACGAGCTTCCCCCCACCCCTAGGCTTGGGGTTAGGAGGGCCCATCGCCG
GAAACCGCTACGGCAAAAAGCGCAAGCTGTGGTATATGGAAACGTCCCCA
TCGCCCGGTTCACAAGGAATGGCTGCGTCTAATCATGGTGATGCTGATGG
AGACGATGCTGCAAATATGGCGAGAGCGGGTGTGGGCTCGCCAAGTTCCG
CAGGGCCAGCAGCGAGAGTGACGGGATGGGCGGCCCGCGGCGGGGGGGAG
TCAGCAGCATCGGGAGTCTGCATGGCAGCGGCAGCGGTGTCATCACTGCC
AGGGACGCCTAGGGTTAGGGAAGAAGGGCGTACACGTCCGAAGCACGATA
CGAGTGCCCCGAAGAAAGACAAACGTTCCCTTAACCCAAGCACCGGTGAC
ACTGAACGTCAGGCGGGTACAGGTGCAATGGAAGGGAGGCATCCGCCGTA
CGCCGACATGGCTGTGGAAGCGGTGCAGGCGTTAGGGCAATCGAGGGGTT
CGAGTCTTTCGGCCGTGGCGATATGGATTCGAAACAGCCGCTATGGAGCC
CTCTTGGTGAACGCTGGGGCTTCGGCGAAGGAATTCAAGGCTACTGTTTC
TGTCGGCGTGAAGCAGGCGCTTGTCCAAGGGAAGCTGGTCAAGAACCGCA
CCAACTACCGAGTCTCCGCCGAGCACGCCGAGGAGCTCGCCCGAAGGCAG
GCCAGTAGTAGTGACAACGACGGCCGCCTAGATCCCTCCTCCTTTCCTCC
AGGACAACCTGGTGGCGGTAGCGCTGCTGGTGCTTCCGCTGCTTCTACTA
CTGCTGCTGTTGCTGTCGAAGTCCGAATAGATCCCGAGGAGCGTCCACCG
TCTGCGGCAGCGGTTCCTCAGTCGCATGGCGTCACGTTTTCCCCACGCGA
TGAGCATCGATATGCTAGTAATGGGGAGGCGATCGATGATACCTTTACGG
CAATAAACGCTGCCGAAGGAAAGGGAGACGACCGAGGACGGAGATACGAG
TCTGAAGATATTGTGCATAGTAGTGTTGGCAAGGCGAGTACGGGCGGTGC
AATGGACCTTGACAGCGGGCGAGGAAGGGGGCGCGGGCGCGCGCTTGTCC
AAGGGAAGCTGGTCAAGAACCGCACCAACTACCGAGTCTCCGCCGAGCAC
GCCGAGGAGCTCGCCCGAAGGCAGGCCAGTAGTAGTGACAACGACGGCCG
CCTAGATCCCTCCTCCTTTCCTCCAGGACAACCTGGTGGCGGTAGCGCTG
CTGGTGCTTCCGCTGCTTCTACTACTGCTGCTGTTGCTGTCGAAGTCCGA
ATAGATCCCGAGGAGCGTCCACCGTCTGCGGCAGCGGTTCCTCAGTCGCA
TGGCGTCACGTTTTCCCCACGCGATGAGCATCGATATGCTAGTAATGGGG
AGGCGATCGATGATACCTTTACGGCAATAAACGCTGCCGAAGGAAAGGGA
GACGACCGAGGACGGAGATACGAGTCTGAAGATATTGTGCATAGTAGTGT
TGGCAAGGCGAGTACGGGCGGTGCAATGGACCTTGACAGCGGGCGAGGAA
GGGGGCGCGGGCGC
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