mRNA_H-fluviatilis_contig100050.73.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100050.73.1
Unique NamemRNA_H-fluviatilis_contig100050.73.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig100050.73.1 vs. uniprot
Match: A0A168PPA0_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168PPA0_ABSGL)

HSP 1 Score: 102 bits (253), Expect = 9.490e-25
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    7 RKQAKRLIRSFIDFPKPLIGAVNGHCLGVAVTTMSLCDIVYASESATFHTPFMQFAFCAEGCSSVVFPELMG 222
            R   K L+   I FPK LIGAVNGHC+G   TT++LCD+VY+   AT++TPFM+  FCAEGCSSV+FP +MG
Sbjct:   90 RLTTKNLVEEMIRFPKLLIGAVNGHCIGFGTTTLALCDVVYSVPEATYNTPFMKLGFCAEGCSSVLFPRIMG 161          
BLAST of mRNA_H-fluviatilis_contig100050.73.1 vs. uniprot
Match: A0A1X2I506_9FUNG (ClpP/crotonase-like domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2I506_9FUNG)

HSP 1 Score: 102 bits (253), Expect = 9.860e-25
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    7 RKQAKRLIRSFIDFPKPLIGAVNGHCLGVAVTTMSLCDIVYASESATFHTPFMQFAFCAEGCSSVVFPELMG 222
            R   K L+   I FPK LIGAVNGHC+G   TT++LCD+VY+   ATF TPFM+  FCAEGCSSV+FP +MG
Sbjct:   90 RLTTKNLVAEMIRFPKLLIGAVNGHCIGFGTTTLALCDVVYSVPEATFSTPFMKLGFCAEGCSSVLFPRIMG 161          
BLAST of mRNA_H-fluviatilis_contig100050.73.1 vs. uniprot
Match: A0A433Q9R5_9FUNG (ClpP/crotonase-like domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q9R5_9FUNG)

HSP 1 Score: 101 bits (252), Expect = 1.330e-24
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   10 KQAKRLIRSFIDFPKPLIGAVNGHCLGVAVTTMSLCDIVYASESATFHTPFMQFAFCAEGCSSVVFPELMG 222
            +  K LI   I FPK LIGAVNG+ +G  VTT++LCD+VYA   ATF TPFMQ AFCAEGCSSV+FP +MG
Sbjct:   93 ENTKNLIAEMIRFPKLLIGAVNGNAIGFGVTTLALCDVVYAVPGATFKTPFMQLAFCAEGCSSVLFPRIMG 163          
BLAST of mRNA_H-fluviatilis_contig100050.73.1 vs. uniprot
Match: A0A163V783_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163V783_ABSGL)

HSP 1 Score: 100 bits (250), Expect = 2.740e-24
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    7 RKQAKRLIRSFIDFPKPLIGAVNGHCLGVAVTTMSLCDIVYASESATFHTPFMQFAFCAEGCSSVVFPELMG 222
            R   K L+   I+FPK LIGAVNGHC+G   TT++LCD+VY+   AT+ TPFM+  FCAEGCSSV+FP +MG
Sbjct:   90 RLVTKTLVDEMINFPKLLIGAVNGHCIGFGTTTLALCDVVYSVPEATYSTPFMKLGFCAEGCSSVLFPRIMG 161          
BLAST of mRNA_H-fluviatilis_contig100050.73.1 vs. uniprot
Match: A0A1X2GP90_9FUNG (ClpP/crotonase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GP90_9FUNG)

HSP 1 Score: 98.6 bits (244), Expect = 1.860e-23
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   19 KRLIRSFIDFPKPLIGAVNGHCLGVAVTTMSLCDIVYASESATFHTPFMQFAFCAEGCSSVVFPELMGVN 228
            K LI   I+FPK LI  VNG+ +G   TT+ LCD+VY+   ATF+TPFMQF FCAEGCSSV+FP +MGV+
Sbjct:   91 KNLITEMINFPKLLIAGVNGNSIGFGCTTLGLCDVVYSVPEATFNTPFMQFGFCAEGCSSVLFPRIMGVS 160          
BLAST of mRNA_H-fluviatilis_contig100050.73.1 vs. uniprot
Match: UPI000C6DA9A9 (enoyl-CoA delta isomerase 2, mitochondrial-like isoform X1 n=3 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DA9A9)

HSP 1 Score: 100 bits (249), Expect = 2.130e-23
Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    7 RKQAKRLIRSFIDFPKPLIGAVNGHCLGVAVTTMSLCDIVYASESATFHTPFMQFAFCAEGCSSVVFPELMG 222
            +++ KR + +FIDFPKPLI AVNG  +G++VT + LCD+VYA+++ATFHTPF Q A   E CSSV+FP++MG
Sbjct:  225 KERLKRFVDAFIDFPKPLIAAVNGPAVGISVTLLGLCDVVYAADNATFHTPFSQLAQSPEACSSVIFPKIMG 296          
BLAST of mRNA_H-fluviatilis_contig100050.73.1 vs. uniprot
Match: A0A8H7S2F9_9FUNG (Uncharacterized protein n=2 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S2F9_9FUNG)

HSP 1 Score: 97.4 bits (241), Expect = 6.730e-23
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 RKQAKRLIRSFIDFPKPLIGAVNGHCLGVAVTTMSLCDIVYASESATFHTPFMQFAFCAEGCSSVVFPELMG 222
            R+  K ++ + I FPK LIGAVNG  +G   TT++LCD+VY+   ATF+TPFM+ AFCAEGCSSV+FP +MG
Sbjct:   91 RQTTKNVVSAMIQFPKILIGAVNGPSIGFGTTTLALCDVVYSVPEATFNTPFMKLAFCAEGCSSVLFPRVMG 162          
BLAST of mRNA_H-fluviatilis_contig100050.73.1 vs. uniprot
Match: A0A367JRP9_RHIAZ (Enoyl-CoA delta isomerase 2, mitochondrial n=5 Tax=Rhizopus TaxID=4842 RepID=A0A367JRP9_RHIAZ)

HSP 1 Score: 96.7 bits (239), Expect = 1.130e-22
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 RKQAKRLIRSFIDFPKPLIGAVNGHCLGVAVTTMSLCDIVYASESATFHTPFMQFAFCAEGCSSVVFPELMG 222
            R+  K L+   I+FPK LI  VNG+ +G  VTT++LCD+VY+   ATF+TPFM+ AFCAEGCSS++FP +MG
Sbjct:   90 RQVTKTLVDELINFPKLLIAGVNGNAIGFGVTTLALCDVVYSVPGATFNTPFMKLAFCAEGCSSILFPRIMG 161          
BLAST of mRNA_H-fluviatilis_contig100050.73.1 vs. uniprot
Match: A0A367J971_RHIST (Enoyl-CoA delta isomerase 2, mitochondrial n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367J971_RHIST)

HSP 1 Score: 96.3 bits (238), Expect = 1.570e-22
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 RKQAKRLIRSFIDFPKPLIGAVNGHCLGVAVTTMSLCDIVYASESATFHTPFMQFAFCAEGCSSVVFPELMG 222
            R   K L+   I+FPK LI  VNG+ +G  VTT++LCD+VY+   ATF+TPFM+ AFCAEGCSS++FP++MG
Sbjct:   90 RHVTKTLVDELINFPKLLIAGVNGNAIGFGVTTLALCDVVYSVPGATFNTPFMKLAFCAEGCSSILFPKIMG 161          
BLAST of mRNA_H-fluviatilis_contig100050.73.1 vs. uniprot
Match: U5ENH5_9DIPT (Putative enoyl-coa hydratase/isomerase (Fragment) n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5ENH5_9DIPT)

HSP 1 Score: 95.5 bits (236), Expect = 1.730e-22
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    4 LRKQA---KRLIRSFIDFPKPLIGAVNGHCLGVAVTTMSLCDIVYASESATFHTPFMQFAFCAEGCSSVVFPELMG 222
            LRK +   K LIR+F  FPK LIG VNG C+G+A TT++LCD++YA +SA F+TPF     CAEGCSS  FP+++G
Sbjct:   65 LRKSSMVLKELIRAFYKFPKLLIGIVNGPCIGIAATTIALCDLIYAVDSAYFYTPFTALGLCAEGCSSYTFPKILG 140          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100050.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A168PPA0_ABSGL9.490e-2559.72Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1X2I506_9FUNG9.860e-2561.11ClpP/crotonase-like domain-containing protein n=1 ... [more]
A0A433Q9R5_9FUNG1.330e-2464.79ClpP/crotonase-like domain-containing protein n=1 ... [more]
A0A163V783_ABSGL2.740e-2459.72Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1X2GP90_9FUNG1.860e-2361.43ClpP/crotonase n=1 Tax=Hesseltinella vesiculosa Ta... [more]
UPI000C6DA9A92.130e-2358.33enoyl-CoA delta isomerase 2, mitochondrial-like is... [more]
A0A8H7S2F9_9FUNG6.730e-2358.33Uncharacterized protein n=2 Tax=Mucor circinatus T... [more]
A0A367JRP9_RHIAZ1.130e-2256.94Enoyl-CoA delta isomerase 2, mitochondrial n=5 Tax... [more]
A0A367J971_RHIST1.570e-2256.94Enoyl-CoA delta isomerase 2, mitochondrial n=1 Tax... [more]
U5ENH5_9DIPT1.730e-2256.58Putative enoyl-coa hydratase/isomerase (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100050contigH-fluviatilis_contig100050:504..792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score98.2
Seed ortholog evalue1.7e-18
Seed eggNOG ortholog8081.XP_008400378.1
Preferred nameECI2
KEGG rclassRC01078
KEGG koko:K13239,ko:K17964
KEGG ReactionR04756
KEGG Pathwayko00071,ko04146,map00071,map04146
GOsGO:0003674,GO:0003824,GO:0004165,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0015031,GO:0015833,GO:0016042,GO:0016043,GO:0016054,GO:0016853,GO:0016860,GO:0016863,GO:0019395,GO:0019752,GO:0030258,GO:0031907,GO:0031974,GO:0031981,GO:0032787,GO:0033036,GO:0033365,GO:0033540,GO:0034440,GO:0034613,GO:0042579,GO:0042742,GO:0042886,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046395,GO:0046907,GO:0050829,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055114,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098542,GO:1901575
EggNOG free text desc.enoyl-CoA delta isomerase 2
EggNOG OGs38F2P@33154,3B9XG@33208,3D1AN@33213,47Z2D@7711,48W73@7742,4A076@7898,COG1024@1,COG4281@1,KOG0016@2759,KOG0817@2759
EC5.3.3.8
COG Functional cat.I
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Hectar predicted targeting categorymitochondrion
Exons3
Model size228
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100050.73.1prot_H-fluviatilis_contig100050.73.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100050 504..792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.6435494-CDS-H-fluviatilis_contig100050:503..6211622928996.6435494-CDS-H-fluviatilis_contig100050:503..621Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100050 504..621 +
1691135143.9260895-CDS-H-fluviatilis_contig100050:503..6211691135143.9260895-CDS-H-fluviatilis_contig100050:503..621Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100050 504..621 +
1622928996.6548822-CDS-H-fluviatilis_contig100050:652..7211622928996.6548822-CDS-H-fluviatilis_contig100050:652..721Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100050 653..721 +
1691135143.9392352-CDS-H-fluviatilis_contig100050:652..7211691135143.9392352-CDS-H-fluviatilis_contig100050:652..721Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100050 653..721 +
1622928996.6693268-CDS-H-fluviatilis_contig100050:751..7921622928996.6693268-CDS-H-fluviatilis_contig100050:751..792Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100050 752..792 +
1691135143.9477286-CDS-H-fluviatilis_contig100050:751..7921691135143.9477286-CDS-H-fluviatilis_contig100050:751..792Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100050 752..792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100050.73.1

>prot_H-fluviatilis_contig100050.73.1 ID=prot_H-fluviatilis_contig100050.73.1|Name=mRNA_H-fluviatilis_contig100050.73.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=76bp
MLRKQAKRLIRSFIDFPKPLIGAVNGHCLGVAVTTMSLCDIVYASESATF
HTPFMQFAFCAEGCSSVVFPELMGVN
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mRNA from alignment at H-fluviatilis_contig100050:504..792+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100050.73.1 ID=mRNA_H-fluviatilis_contig100050.73.1|Name=mRNA_H-fluviatilis_contig100050.73.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=289bp|location=Sequence derived from alignment at H-fluviatilis_contig100050:504..792+ (Heribaudiella fluviatilis SAG_13_90)
ATGCTTCGCAAACAGGCCAAACGGCTTATCCGCTCCTTCATTGACTTCCC AAAACCATTGATTGGTGCTGTGAATGGACATTGTTTGGGAGTTGCGGTCA CCACCATGTCACTGTGTGGTATGTTATATCGTGAGAGCGATGCGTACAGA TATTGTCTATGCTTCCGAATCTGCCACCTTCCACACGCCGTTCATGCAGT TTGCGTTCTGCGCCGAAGGTTTGGTTTTAAAAAGGTGACGGTAGCTAGGC TGCTCCAGCGTCGTCTTCCCTGAACTGATGGGGGTAAAT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100050:504..792+

>mRNA_H-fluviatilis_contig100050.73.1 ID=mRNA_H-fluviatilis_contig100050.73.1|Name=mRNA_H-fluviatilis_contig100050.73.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=456bp|location=Sequence derived from alignment at H-fluviatilis_contig100050:504..792+ (Heribaudiella fluviatilis SAG_13_90)
ATGCTTCGCAAACAGGCCAAACGGCTTATCCGCTCCTTCATTGACTTCCC
AAAACCATTGATTGGTGCTGTGAATGGACATTGTTTGGGAGTTGCGGTCA
CCACCATGTCACTGTGTGATGCTTCGCAAACAGGCCAAACGGCTTATCCG
CTCCTTCATTGACTTCCCAAAACCATTGATTGGTGCTGTGAATGGACATT
GTTTGGGAGTTGCGGTCACCACCATGTCACTGTGTGATATTGTCTATGCT
TCCGAATCTGCCACCTTCCACACGCCGTTCATGCAGTTTGCGTTCTGCGC
CGAAGATATTGTCTATGCTTCCGAATCTGCCACCTTCCACACGCCGTTCA
TGCAGTTTGCGTTCTGCGCCGAAGGCTGCTCCAGCGTCGTCTTCCCTGAA
CTGATGGGGGTAAATGCTGCTCCAGCGTCGTCTTCCCTGAACTGATGGGG
GTAAAT
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