mRNA_H-fluviatilis_contig100047.72.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100047.72.1
Unique NamemRNA_H-fluviatilis_contig100047.72.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig100047.72.1 vs. uniprot
Match: A0A815FZX2_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A815FZX2_9BILA)

HSP 1 Score: 48.9 bits (115), Expect = 2.190e-5
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   13 WPADVKQLYLDGNNMLYVDDAIRASALQRGGRK 111
            WP D++Q+YLDGNNM++V D++R   L R GRK
Sbjct:  328 WPKDIEQVYLDGNNMMFVIDSLRRLCLNRAGRK 360          
BLAST of mRNA_H-fluviatilis_contig100047.72.1 vs. uniprot
Match: A0A814A1C4_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A814A1C4_9BILA)

HSP 1 Score: 47.8 bits (112), Expect = 5.530e-5
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   13 WPADVKQLYLDGNNMLYVDDAIRASALQRGGRK 111
            WP D++Q+YLDGNNM++V D++R   L R G+K
Sbjct:  130 WPRDIEQVYLDGNNMMFVVDSLRRLCLNRAGKK 162          
BLAST of mRNA_H-fluviatilis_contig100047.72.1 vs. uniprot
Match: A0A814N9A6_9BILA (Hypothetical protein n=2 Tax=Adineta steineri TaxID=433720 RepID=A0A814N9A6_9BILA)

HSP 1 Score: 47.8 bits (112), Expect = 5.600e-5
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   13 WPADVKQLYLDGNNMLYVDDAIRASALQRGGRK 111
            WP D++Q+YLDGNNM++V D++R   L R G+K
Sbjct:  185 WPRDIEQVYLDGNNMMFVVDSLRRLCLNRAGKK 217          
BLAST of mRNA_H-fluviatilis_contig100047.72.1 vs. uniprot
Match: A0A814SB67_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A814SB67_9BILA)

HSP 1 Score: 47.8 bits (112), Expect = 5.610e-5
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   13 WPADVKQLYLDGNNMLYVDDAIRASALQRGGRK 111
            WP D++Q+YLDGNNM++V D++R   L R G+K
Sbjct:  326 WPRDIEQVYLDGNNMMFVVDSLRRLCLNRAGKK 358          
BLAST of mRNA_H-fluviatilis_contig100047.72.1 vs. uniprot
Match: A0A814TY51_9BILA (Hypothetical protein n=6 Tax=Adineta steineri TaxID=433720 RepID=A0A814TY51_9BILA)

HSP 1 Score: 47.8 bits (112), Expect = 5.610e-5
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   13 WPADVKQLYLDGNNMLYVDDAIRASALQRGGRK 111
            WP D++Q+YLDGNNM++V D++R   L R G+K
Sbjct:  328 WPKDIEQVYLDGNNMMFVIDSLRRLCLNRNGKK 360          
BLAST of mRNA_H-fluviatilis_contig100047.72.1 vs. uniprot
Match: A0A819JI97_9BILA (Hypothetical protein n=13 Tax=Adineta steineri TaxID=433720 RepID=A0A819JI97_9BILA)

HSP 1 Score: 47.8 bits (112), Expect = 5.610e-5
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   13 WPADVKQLYLDGNNMLYVDDAIRASALQRGGRK 111
            WP D++Q+YLDGNNM++V D++R   L R G+K
Sbjct:  326 WPRDIEQVYLDGNNMMFVVDSLRRLCLNRAGKK 358          
BLAST of mRNA_H-fluviatilis_contig100047.72.1 vs. uniprot
Match: A0A817S0E2_9BILA (Hypothetical protein n=5 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817S0E2_9BILA)

HSP 1 Score: 47.8 bits (112), Expect = 5.610e-5
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   13 WPADVKQLYLDGNNMLYVDDAIRASALQRGGRK 111
            WP D++Q+YLDGNNM++V D++R   L R G+K
Sbjct:  332 WPRDIEQVYLDGNNMMFVVDSLRRLCLNRSGKK 364          
BLAST of mRNA_H-fluviatilis_contig100047.72.1 vs. uniprot
Match: A0A814TTR6_9BILA (Hypothetical protein n=11 Tax=Adineta steineri TaxID=433720 RepID=A0A814TTR6_9BILA)

HSP 1 Score: 47.8 bits (112), Expect = 5.620e-5
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   13 WPADVKQLYLDGNNMLYVDDAIRASALQRGGRK 111
            WP D++Q+YLDGNNM++V D++R   L R G+K
Sbjct:  341 WPRDIEQVYLDGNNMMFVVDSLRRLCLNRAGKK 373          
BLAST of mRNA_H-fluviatilis_contig100047.72.1 vs. uniprot
Match: A0A814WMP6_9BILA (Hypothetical protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A814WMP6_9BILA)

HSP 1 Score: 47.4 bits (111), Expect = 7.680e-5
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   13 WPADVKQLYLDGNNMLYVDDAIRASALQRGGRK 111
            WP D++Q+YLDGNNM++V D++R   L R G+K
Sbjct:  329 WPHDIEQVYLDGNNMMFVVDSLRRLCLNRAGKK 361          
BLAST of mRNA_H-fluviatilis_contig100047.72.1 vs. uniprot
Match: A0A814SV50_9BILA (Hypothetical protein n=2 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814SV50_9BILA)

HSP 1 Score: 47.0 bits (110), Expect = 8.200e-5
Identity = 17/37 (45.95%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   13 WPADVKQLYLDGNNMLYVDDAIRASALQRGGRKKAEV 123
            WP++++Q+YLDGNNM++V D++R   L R G+K  ++
Sbjct:   29 WPSNIEQVYLDGNNMMFVIDSLRRLCLNRHGKKTEQI 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100047.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A815FZX2_9BILA2.190e-557.58Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A814A1C4_9BILA5.530e-554.55Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A814N9A6_9BILA5.600e-554.55Hypothetical protein n=2 Tax=Adineta steineri TaxI... [more]
A0A814SB67_9BILA5.610e-554.55Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A814TY51_9BILA5.610e-554.55Hypothetical protein n=6 Tax=Adineta steineri TaxI... [more]
A0A819JI97_9BILA5.610e-554.55Hypothetical protein n=13 Tax=Adineta steineri Tax... [more]
A0A817S0E2_9BILA5.610e-554.55Hypothetical protein n=5 Tax=Rotaria sp. Silwood2 ... [more]
A0A814TTR6_9BILA5.620e-554.55Hypothetical protein n=11 Tax=Adineta steineri Tax... [more]
A0A814WMP6_9BILA7.680e-554.55Hypothetical protein n=3 Tax=Rotaria sordida TaxID... [more]
A0A814SV50_9BILA8.200e-545.95Hypothetical protein n=2 Tax=Didymodactylos carnos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100047contigH-fluviatilis_contig100047:205..390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.58326-CDS-H-fluviatilis_contig100047:204..2721622928996.58326-CDS-H-fluviatilis_contig100047:204..272Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100047 205..272 -
1691135143.8999975-CDS-H-fluviatilis_contig100047:204..2721691135143.8999975-CDS-H-fluviatilis_contig100047:204..272Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100047 205..272 -
1622928996.5989957-CDS-H-fluviatilis_contig100047:320..3901622928996.5989957-CDS-H-fluviatilis_contig100047:320..390Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100047 321..390 -
1691135143.9147928-CDS-H-fluviatilis_contig100047:320..3901691135143.9147928-CDS-H-fluviatilis_contig100047:320..390Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100047 321..390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100047.72.1prot_H-fluviatilis_contig100047.72.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100047 205..390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100047.72.1

>prot_H-fluviatilis_contig100047.72.1 ID=prot_H-fluviatilis_contig100047.72.1|Name=mRNA_H-fluviatilis_contig100047.72.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=46bp
LARGWPADVKQLYLDGNNMLYVDDAIRASALQRGGRKKAEVQLTQL
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mRNA from alignment at H-fluviatilis_contig100047:205..390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100047.72.1 ID=mRNA_H-fluviatilis_contig100047.72.1|Name=mRNA_H-fluviatilis_contig100047.72.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=186bp|location=Sequence derived from alignment at H-fluviatilis_contig100047:205..390- (Heribaudiella fluviatilis SAG_13_90)
TTGGCGCGTGGTTGGCCTGCCGATGTGAAGCAGCTCTACCTGGACGGGAA CAATATGCTCTACGTGGACGGTGTGTTGATGTTACGCATTCCGTGCTTGA CATTGTGTTGGGTGCCAGACGCAATCCGTGCCAGTGCACTGCAACGGGGC GGTCGCAAGAAGGCGGAAGTGCAACTCACGCAACTT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100047:205..390-

>mRNA_H-fluviatilis_contig100047.72.1 ID=mRNA_H-fluviatilis_contig100047.72.1|Name=mRNA_H-fluviatilis_contig100047.72.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=276bp|location=Sequence derived from alignment at H-fluviatilis_contig100047:205..390- (Heribaudiella fluviatilis SAG_13_90)
TTGGCGCGTGGTTGGCCTGCCGATGTGAAGCAGCTCTACCTGGACGGGAA
CAATATGCTCTACGTGGACGTTGGCGCGTGGTTGGCCTGCCGATGTGAAG
CAGCTCTACCTGGACGGGAACAATATGCTCTACGTGGACGACGCAATCCG
TGCCAGTGCACTGCAACGGGGCGGTCGCAAGAAGGCGGAAGTGCAACTCA
CGCAACTTACGCAATCCGTGCCAGTGCACTGCAACGGGGCGGTCGCAAGA
AGGCGGAAGTGCAACTCACGCAACTT
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