mRNA_H-fluviatilis_contig100046.71.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100046.71.1
Unique NamemRNA_H-fluviatilis_contig100046.71.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100046.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100046contigH-fluviatilis_contig100046:229..738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog4792.ETI31938
EggNOG free text desc.TRAF-type zinc finger
EggNOG OGs3QCWH@4776,COG0666@1,KOG0297@1,KOG0297@2759,KOG0502@2759,KOG0504@2759
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.5130649-CDS-H-fluviatilis_contig100046:228..3931622928996.5130649-CDS-H-fluviatilis_contig100046:228..393Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100046 229..393 -
1691135143.875163-CDS-H-fluviatilis_contig100046:228..3931691135143.875163-CDS-H-fluviatilis_contig100046:228..393Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100046 229..393 -
1622928996.5293324-CDS-H-fluviatilis_contig100046:603..7381622928996.5293324-CDS-H-fluviatilis_contig100046:603..738Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100046 604..738 -
1691135143.886819-CDS-H-fluviatilis_contig100046:603..7381691135143.886819-CDS-H-fluviatilis_contig100046:603..738Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100046 604..738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100046.71.1prot_H-fluviatilis_contig100046.71.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100046 229..738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100046.71.1

>prot_H-fluviatilis_contig100046.71.1 ID=prot_H-fluviatilis_contig100046.71.1|Name=mRNA_H-fluviatilis_contig100046.71.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=100bp
CPLTSVRCRLGCGANMWLKMRTEHESLLCSELTVTCKWGCAEAIKGVFLP
LPTECSTVRGFRQCGNRCGQTVPVADMKTHYAEACPHRFVPCGAGCGYKI
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mRNA from alignment at H-fluviatilis_contig100046:229..738-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100046.71.1 ID=mRNA_H-fluviatilis_contig100046.71.1|Name=mRNA_H-fluviatilis_contig100046.71.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=510bp|location=Sequence derived from alignment at H-fluviatilis_contig100046:229..738- (Heribaudiella fluviatilis SAG_13_90)
TGCCCGCTAACGAGCGTGCGTTGCCGTCTGGGTTGCGGAGCGAACATGTG
GCTGAAGATGCGGACGGAACATGAGAGTTTACTGTGCAGCGAGCTGACAG
TGACCTGCAAATGGGGTTGTGCGGAAGCAATAAAGGTGCAGCTTCGCCGT
TGCCCTCGCTTCCGCTTGGTCGGTCCACCTCACCCTGACTGACCATCCGA
ACACAACGAAATCGACTGAACTTAACTTCAGTCCTTAAGAGTATAGCACA
TGGTACTGGAGAAAGGTAAAGAGCTGTGACAACGCTTAGGAGTCTCTCTC
CTGCAATGTACTTTGCGCAGAAATCCTCGCAAAGTTCTGCGGAAGGGTGT
GTTTCTCCCTCTTCCAACAGAATGCTCCACCGTCCGCGGCTTCAGGCAAT
GCGGTAACCGCTGCGGACAGACGGTACCCGTGGCAGATATGAAGACCCAC
TACGCAGAGGCGTGCCCACATCGCTTCGTGCCTTGTGGGGCCGGGTGCGG
TTACAAGATA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100046:229..738-

>mRNA_H-fluviatilis_contig100046.71.1 ID=mRNA_H-fluviatilis_contig100046.71.1|Name=mRNA_H-fluviatilis_contig100046.71.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=600bp|location=Sequence derived from alignment at H-fluviatilis_contig100046:229..738- (Heribaudiella fluviatilis SAG_13_90)
TGCCCGCTAACGAGCGTGCGTTGCCGTCTGGGTTGCGGAGCGAACATGTG
GCTGAAGATGCGGACGGAACATGAGAGTTTACTGTGCAGCGAGCTGACAG
TGACCTGCAAATGGGGTTGTGCGGAAGCAATAAAGTGCCCGCTAACGAGC
GTGCGTTGCCGTCTGGGTTGCGGAGCGAACATGTGGCTGAAGATGCGGAC
GGAACATGAGAGTTTACTGTGCAGCGAGCTGACAGTGACCTGCAAATGGG
GTTGTGCGGAAGCAATAAAGGGTGTGTTTCTCCCTCTTCCAACAGAATGC
TCCACCGTCCGCGGCTTCAGGCAATGCGGTAACCGCTGCGGACAGACGGT
ACCCGTGGCAGATATGAAGACCCACTACGCAGAGGCGTGCCCACATCGCT
TCGTGCCTTGTGGGGCCGGGTGCGGTTACAAGATAGGTGTGTTTCTCCCT
CTTCCAACAGAATGCTCCACCGTCCGCGGCTTCAGGCAATGCGGTAACCG
CTGCGGACAGACGGTACCCGTGGCAGATATGAAGACCCACTACGCAGAGG
CGTGCCCACATCGCTTCGTGCCTTGTGGGGCCGGGTGCGGTTACAAGATA
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