mRNA_H-fluviatilis_contig100034.70.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100034.70.1
Unique NamemRNA_H-fluviatilis_contig100034.70.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100034.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100034contigH-fluviatilis_contig100034:2..491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size490
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100034.70.1prot_H-fluviatilis_contig100034.70.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100034 136..441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.4276404-UTR-H-fluviatilis_contig100034:1..1351622928996.4276404-UTR-H-fluviatilis_contig100034:1..135Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100034 2..135 +
1691135143.8264384-UTR-H-fluviatilis_contig100034:1..1351691135143.8264384-UTR-H-fluviatilis_contig100034:1..135Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100034 2..135 +
1622928996.4639108-UTR-H-fluviatilis_contig100034:441..4911622928996.4639108-UTR-H-fluviatilis_contig100034:441..491Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100034 442..491 +
1691135143.8636794-UTR-H-fluviatilis_contig100034:441..4911691135143.8636794-UTR-H-fluviatilis_contig100034:441..491Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100034 442..491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.4451957-CDS-H-fluviatilis_contig100034:135..4411622928996.4451957-CDS-H-fluviatilis_contig100034:135..441Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100034 136..441 +
1691135143.8377874-CDS-H-fluviatilis_contig100034:135..4411691135143.8377874-CDS-H-fluviatilis_contig100034:135..441Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100034 136..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100034.70.1

>prot_H-fluviatilis_contig100034.70.1 ID=prot_H-fluviatilis_contig100034.70.1|Name=mRNA_H-fluviatilis_contig100034.70.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=102bp
MVPHRPPEDEMLHGQGCRSLSLAIFYAHARNPPWLPGLYLANAERFCLRV
LPWGAQHKFAAGRSPCHNQATQHCGRLEALVASEKSRHERIIATKVVLYY
S*
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mRNA from alignment at H-fluviatilis_contig100034:2..491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100034.70.1 ID=mRNA_H-fluviatilis_contig100034.70.1|Name=mRNA_H-fluviatilis_contig100034.70.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=490bp|location=Sequence derived from alignment at H-fluviatilis_contig100034:2..491+ (Heribaudiella fluviatilis SAG_13_90)
TATTTCGTGGACAAACGACTTAGAGTGTGACTAATTCAGATCTCGACCGG
AATCAATCACAACAAGTCTTTCCCACAGACGTGGTATCCTGAGTTCAAGG
AGGGCTCTCGAAGGGTGGCAGTGTTCCGTCGGCGATGGTGCCCCACCGGC
CTCCCGAAGACGAGATGCTGCATGGACAAGGATGCCGCTCCCTGTCTCTT
GCAATTTTTTACGCTCATGCAAGAAACCCTCCGTGGCTACCTGGTCTCTA
TCTAGCCAACGCCGAGCGGTTCTGCCTCCGCGTGTTGCCATGGGGTGCAC
AGCACAAATTTGCGGCTGGTCGTAGCCCCTGCCACAATCAAGCCACCCAG
CACTGTGGCAGGCTTGAGGCTTTGGTAGCGTCTGAAAAAAGCCGACACGA
GAGAATCATTGCCACAAAAGTAGTCTTGTATTATAGTTGAAGCGTCGGGA
GGATGCGCACAAGAGGAATACGCAGGTATTCTAATCCCAC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100034:2..491+

>mRNA_H-fluviatilis_contig100034.70.1 ID=mRNA_H-fluviatilis_contig100034.70.1|Name=mRNA_H-fluviatilis_contig100034.70.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=612bp|location=Sequence derived from alignment at H-fluviatilis_contig100034:2..491+ (Heribaudiella fluviatilis SAG_13_90)
ATGGTGCCCCACCGGCCTCCCGAAGACGAGATGCTGCATGGACAAGGATG
CCGCTCCCTGTCTCTTGCAATTTTTTACGCTCATGCAAGAAACCCTCCGT
GGCTACCTGGTCTCTATCTAGCCAACGCCGAGCGGTTCTGCCTCCGCGTG
TTGCCATGGGGTGCACAGCACAAATTTGCGGCTGGTCGTAGCCCCTGCCA
CAATCAAGCCACCCAGCACTGTGGCAGGCTTGAGGCTTTGGTAGCGTCTG
AAAAAAGCCGACACGAGAGAATCATTGCCACAAAAGTAGTCTTGTATTAT
AGTTGAATGGTGCCCCACCGGCCTCCCGAAGACGAGATGCTGCATGGACA
AGGATGCCGCTCCCTGTCTCTTGCAATTTTTTACGCTCATGCAAGAAACC
CTCCGTGGCTACCTGGTCTCTATCTAGCCAACGCCGAGCGGTTCTGCCTC
CGCGTGTTGCCATGGGGTGCACAGCACAAATTTGCGGCTGGTCGTAGCCC
CTGCCACAATCAAGCCACCCAGCACTGTGGCAGGCTTGAGGCTTTGGTAG
CGTCTGAAAAAAGCCGACACGAGAGAATCATTGCCACAAAAGTAGTCTTG
TATTATAGTTGA
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