mRNA_H-fluviatilis_contig100025.67.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100025.67.1
Unique NamemRNA_H-fluviatilis_contig100025.67.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100025.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100025contigH-fluviatilis_contig100025:299..598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size301
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.1372502-CDS-H-fluviatilis_contig100025:298..5981622928996.1372502-CDS-H-fluviatilis_contig100025:298..598Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100025 299..598 +
1691135143.7410266-CDS-H-fluviatilis_contig100025:298..5981691135143.7410266-CDS-H-fluviatilis_contig100025:298..598Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100025 299..598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100025.67.1prot_H-fluviatilis_contig100025.67.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100025 299..598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100025.67.1

>prot_H-fluviatilis_contig100025.67.1 ID=prot_H-fluviatilis_contig100025.67.1|Name=mRNA_H-fluviatilis_contig100025.67.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=100bp
PDIRTAFYQRNRLLRVPALVDIMGSCRCMKLPVHMAKVETEEERTKCSPR
RSSSVPVAAKTRTANPSKVPPRETDTARSRALKTYTSTTRMLVSFACLR*
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mRNA from alignment at H-fluviatilis_contig100025:299..598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100025.67.1 ID=mRNA_H-fluviatilis_contig100025.67.1|Name=mRNA_H-fluviatilis_contig100025.67.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=300bp|location=Sequence derived from alignment at H-fluviatilis_contig100025:299..598+ (Heribaudiella fluviatilis SAG_13_90)
CCGGATATTCGTACGGCTTTCTACCAAAGAAATCGGTTGTTACGTGTCCC
CGCTCTTGTCGATATTATGGGAAGTTGCCGGTGCATGAAGTTGCCGGTGC
ATATGGCAAAGGTTGAAACAGAGGAGGAAAGGACAAAGTGCTCACCAAGA
CGATCGAGTAGTGTCCCGGTCGCAGCGAAAACGAGGACGGCAAACCCGTC
AAAAGTACCTCCCAGAGAGACAGATACGGCTCGCAGCCGAGCGTTAAAAA
CCTACACTAGTACCACTAGGATGCTTGTATCTTTCGCTTGCCTGCGTTGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100025:299..598+

>mRNA_H-fluviatilis_contig100025.67.1 ID=mRNA_H-fluviatilis_contig100025.67.1|Name=mRNA_H-fluviatilis_contig100025.67.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=600bp|location=Sequence derived from alignment at H-fluviatilis_contig100025:299..598+ (Heribaudiella fluviatilis SAG_13_90)
CCGGATATTCGTACGGCTTTCTACCAAAGAAATCGGTTGTTACGTGTCCC
CGCTCTTGTCGATATTATGGGAAGTTGCCGGTGCATGAAGTTGCCGGTGC
ATATGGCAAAGGTTGAAACAGAGGAGGAAAGGACAAAGTGCTCACCAAGA
CGATCGAGTAGTGTCCCGGTCGCAGCGAAAACGAGGACGGCAAACCCGTC
AAAAGTACCTCCCAGAGAGACAGATACGGCTCGCAGCCGAGCGTTAAAAA
CCTACACTAGTACCACTAGGATGCTTGTATCTTTCGCTTGCCTGCGTTGA
CCGGATATTCGTACGGCTTTCTACCAAAGAAATCGGTTGTTACGTGTCCC
CGCTCTTGTCGATATTATGGGAAGTTGCCGGTGCATGAAGTTGCCGGTGC
ATATGGCAAAGGTTGAAACAGAGGAGGAAAGGACAAAGTGCTCACCAAGA
CGATCGAGTAGTGTCCCGGTCGCAGCGAAAACGAGGACGGCAAACCCGTC
AAAAGTACCTCCCAGAGAGACAGATACGGCTCGCAGCCGAGCGTTAAAAA
CCTACACTAGTACCACTAGGATGCTTGTATCTTTCGCTTGCCTGCGTTGA
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