mRNA_H-fluviatilis_contig101541.385.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig101541.385.1
Unique NamemRNA_H-fluviatilis_contig101541.385.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig101541.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig101541contigH-fluviatilis_contig101541:24..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size431
Cds size429
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929040.7345746-CDS-H-fluviatilis_contig101541:23..4521622929040.7345746-CDS-H-fluviatilis_contig101541:23..452Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101541 24..452 +
1691135160.7562034-CDS-H-fluviatilis_contig101541:23..4521691135160.7562034-CDS-H-fluviatilis_contig101541:23..452Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101541 24..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig101541.385.1prot_H-fluviatilis_contig101541.385.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig101541 24..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig101541.385.1

>prot_H-fluviatilis_contig101541.385.1 ID=prot_H-fluviatilis_contig101541.385.1|Name=mRNA_H-fluviatilis_contig101541.385.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=143bp
MGGGWLIDFCFFISVIVVCWLFVAYTDGAMIAFSCSRKIAHKFGVEGLPS
GVTKLFVRMPSAGCVVTSGNTLTNAMPLAQPRATSMVQKGVERGARCEVR
PAIRPVKLACHALAIPIKFIVECALGEGSDGGSITFSNYNYCR
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mRNA from alignment at H-fluviatilis_contig101541:24..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig101541.385.1 ID=mRNA_H-fluviatilis_contig101541.385.1|Name=mRNA_H-fluviatilis_contig101541.385.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=429bp|location=Sequence derived from alignment at H-fluviatilis_contig101541:24..452+ (Heribaudiella fluviatilis SAG_13_90)
ATGGGTGGTGGTTGGTTGATAGACTTCTGCTTCTTCATTTCGGTGATCGT
TGTTTGTTGGTTGTTTGTCGCTTACACGGACGGAGCGATGATTGCTTTTT
CCTGCTCGAGAAAAATTGCCCATAAATTTGGCGTTGAGGGCTTGCCTTCT
GGCGTGACAAAACTGTTTGTGCGCATGCCGAGCGCGGGGTGTGTTGTAAC
GAGCGGGAACACGCTCACCAATGCAATGCCGCTAGCCCAACCACGTGCAA
CCAGCATGGTGCAGAAGGGCGTGGAGAGGGGAGCACGATGTGAGGTGAGA
CCGGCAATACGGCCAGTAAAATTGGCTTGTCACGCCCTTGCAATCCCAAT
TAAGTTTATTGTTGAATGCGCTTTAGGCGAAGGTAGTGATGGTGGTTCCA
TTACTTTCTCCAACTACAATTACTGTCGG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig101541:24..452+

>mRNA_H-fluviatilis_contig101541.385.1 ID=mRNA_H-fluviatilis_contig101541.385.1|Name=mRNA_H-fluviatilis_contig101541.385.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=858bp|location=Sequence derived from alignment at H-fluviatilis_contig101541:24..452+ (Heribaudiella fluviatilis SAG_13_90)
ATGGGTGGTGGTTGGTTGATAGACTTCTGCTTCTTCATTTCGGTGATCGT
TGTTTGTTGGTTGTTTGTCGCTTACACGGACGGAGCGATGATTGCTTTTT
CCTGCTCGAGAAAAATTGCCCATAAATTTGGCGTTGAGGGCTTGCCTTCT
GGCGTGACAAAACTGTTTGTGCGCATGCCGAGCGCGGGGTGTGTTGTAAC
GAGCGGGAACACGCTCACCAATGCAATGCCGCTAGCCCAACCACGTGCAA
CCAGCATGGTGCAGAAGGGCGTGGAGAGGGGAGCACGATGTGAGGTGAGA
CCGGCAATACGGCCAGTAAAATTGGCTTGTCACGCCCTTGCAATCCCAAT
TAAGTTTATTGTTGAATGCGCTTTAGGCGAAGGTAGTGATGGTGGTTCCA
TTACTTTCTCCAACTACAATTACTGTCGGATGGGTGGTGGTTGGTTGATA
GACTTCTGCTTCTTCATTTCGGTGATCGTTGTTTGTTGGTTGTTTGTCGC
TTACACGGACGGAGCGATGATTGCTTTTTCCTGCTCGAGAAAAATTGCCC
ATAAATTTGGCGTTGAGGGCTTGCCTTCTGGCGTGACAAAACTGTTTGTG
CGCATGCCGAGCGCGGGGTGTGTTGTAACGAGCGGGAACACGCTCACCAA
TGCAATGCCGCTAGCCCAACCACGTGCAACCAGCATGGTGCAGAAGGGCG
TGGAGAGGGGAGCACGATGTGAGGTGAGACCGGCAATACGGCCAGTAAAA
TTGGCTTGTCACGCCCTTGCAATCCCAATTAAGTTTATTGTTGAATGCGC
TTTAGGCGAAGGTAGTGATGGTGGTTCCATTACTTTCTCCAACTACAATT
ACTGTCGG
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