mRNA_H-fluviatilis_contig101058.282.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig101058.282.1
Unique NamemRNA_H-fluviatilis_contig101058.282.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig101058.282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig101058contigH-fluviatilis_contig101058:2..688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size689
Cds size669
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929029.113361-UTR-H-fluviatilis_contig101058:1..191622929029.113361-UTR-H-fluviatilis_contig101058:1..19Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101058 2..19 +
1691135156.2705703-UTR-H-fluviatilis_contig101058:1..191691135156.2705703-UTR-H-fluviatilis_contig101058:1..19Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101058 2..19 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929029.1273396-CDS-H-fluviatilis_contig101058:19..6881622929029.1273396-CDS-H-fluviatilis_contig101058:19..688Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101058 20..688 +
1691135156.2781777-CDS-H-fluviatilis_contig101058:19..6881691135156.2781777-CDS-H-fluviatilis_contig101058:19..688Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101058 20..688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig101058.282.1prot_H-fluviatilis_contig101058.282.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig101058 20..688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig101058.282.1

>prot_H-fluviatilis_contig101058.282.1 ID=prot_H-fluviatilis_contig101058.282.1|Name=mRNA_H-fluviatilis_contig101058.282.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=223bp
MAHQQRQQHALPPRHTLLTLQQYQARRKDKKDVTSAVDAPPASTKPGPAG
SCGELPRGATEFTHSQIWKWQPNRPRTTPNPRRSKSGGQVTVTYNKPSGS
CTATLPWPYHARGFGVINTYSSARRTNRENLRLRLSRQAAVTPSRGVAQS
HRRGSPVRERRRSTAPSPTSKPGFGKVKAVSGMKQAKDNERTGKPLRGTV
AVRATGSSGTTDTDRSPAGRIKK
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mRNA from alignment at H-fluviatilis_contig101058:2..688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig101058.282.1 ID=mRNA_H-fluviatilis_contig101058.282.1|Name=mRNA_H-fluviatilis_contig101058.282.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=687bp|location=Sequence derived from alignment at H-fluviatilis_contig101058:2..688+ (Heribaudiella fluviatilis SAG_13_90)
CGTGGGGTGCTGCGAACGATGGCACATCAACAGCGACAACAGCACGCCCT
GCCCCCAAGGCACACTCTCCTCACCCTGCAGCAATACCAGGCAAGAAGGA
AAGACAAGAAGGACGTTACGAGTGCAGTAGACGCTCCGCCAGCCAGTACA
AAGCCGGGACCAGCTGGATCTTGTGGAGAATTACCGCGCGGTGCAACGGA
ATTTACACACTCACAGATCTGGAAGTGGCAGCCGAATCGGCCGCGAACTA
CGCCAAATCCACGTCGCTCCAAGTCCGGGGGGCAGGTCACCGTCACCTAC
AACAAGCCTAGTGGCAGCTGCACCGCTACGCTCCCGTGGCCGTACCACGC
TCGAGGATTTGGAGTCATCAACACGTACTCATCCGCACGCCGCACTAACA
GGGAGAACCTTCGGCTCAGGCTTAGCAGGCAAGCGGCAGTTACACCGAGT
AGGGGGGTAGCACAGAGCCATCGTCGCGGAAGTCCGGTTCGAGAACGACG
CAGATCGACAGCGCCCTCGCCAACAAGCAAGCCCGGCTTCGGCAAGGTTA
AAGCAGTGAGCGGTATGAAGCAAGCGAAGGACAACGAGCGCACAGGGAAA
CCGCTAAGGGGAACGGTCGCGGTGCGGGCGACTGGCTCCAGTGGCACGAC
AGATACTGACCGATCGCCAGCTGGGCGCATTAAAAAA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig101058:2..688+

>mRNA_H-fluviatilis_contig101058.282.1 ID=mRNA_H-fluviatilis_contig101058.282.1|Name=mRNA_H-fluviatilis_contig101058.282.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1338bp|location=Sequence derived from alignment at H-fluviatilis_contig101058:2..688+ (Heribaudiella fluviatilis SAG_13_90)
ATGGCACATCAACAGCGACAACAGCACGCCCTGCCCCCAAGGCACACTCT
CCTCACCCTGCAGCAATACCAGGCAAGAAGGAAAGACAAGAAGGACGTTA
CGAGTGCAGTAGACGCTCCGCCAGCCAGTACAAAGCCGGGACCAGCTGGA
TCTTGTGGAGAATTACCGCGCGGTGCAACGGAATTTACACACTCACAGAT
CTGGAAGTGGCAGCCGAATCGGCCGCGAACTACGCCAAATCCACGTCGCT
CCAAGTCCGGGGGGCAGGTCACCGTCACCTACAACAAGCCTAGTGGCAGC
TGCACCGCTACGCTCCCGTGGCCGTACCACGCTCGAGGATTTGGAGTCAT
CAACACGTACTCATCCGCACGCCGCACTAACAGGGAGAACCTTCGGCTCA
GGCTTAGCAGGCAAGCGGCAGTTACACCGAGTAGGGGGGTAGCACAGAGC
CATCGTCGCGGAAGTCCGGTTCGAGAACGACGCAGATCGACAGCGCCCTC
GCCAACAAGCAAGCCCGGCTTCGGCAAGGTTAAAGCAGTGAGCGGTATGA
AGCAAGCGAAGGACAACGAGCGCACAGGGAAACCGCTAAGGGGAACGGTC
GCGGTGCGGGCGACTGGCTCCAGTGGCACGACAGATACTGACCGATCGCC
AGCTGGGCGCATTAAAAAAATGGCACATCAACAGCGACAACAGCACGCCC
TGCCCCCAAGGCACACTCTCCTCACCCTGCAGCAATACCAGGCAAGAAGG
AAAGACAAGAAGGACGTTACGAGTGCAGTAGACGCTCCGCCAGCCAGTAC
AAAGCCGGGACCAGCTGGATCTTGTGGAGAATTACCGCGCGGTGCAACGG
AATTTACACACTCACAGATCTGGAAGTGGCAGCCGAATCGGCCGCGAACT
ACGCCAAATCCACGTCGCTCCAAGTCCGGGGGGCAGGTCACCGTCACCTA
CAACAAGCCTAGTGGCAGCTGCACCGCTACGCTCCCGTGGCCGTACCACG
CTCGAGGATTTGGAGTCATCAACACGTACTCATCCGCACGCCGCACTAAC
AGGGAGAACCTTCGGCTCAGGCTTAGCAGGCAAGCGGCAGTTACACCGAG
TAGGGGGGTAGCACAGAGCCATCGTCGCGGAAGTCCGGTTCGAGAACGAC
GCAGATCGACAGCGCCCTCGCCAACAAGCAAGCCCGGCTTCGGCAAGGTT
AAAGCAGTGAGCGGTATGAAGCAAGCGAAGGACAACGAGCGCACAGGGAA
ACCGCTAAGGGGAACGGTCGCGGTGCGGGCGACTGGCTCCAGTGGCACGA
CAGATACTGACCGATCGCCAGCTGGGCGCATTAAAAAA
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