mRNA_H-fluviatilis_contig10104.278.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10104.278.1
Unique NamemRNA_H-fluviatilis_contig10104.278.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10104.278.1 vs. uniprot
Match: A0A6H5JMU8_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMU8_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 5.460e-48
Identity = 71/105 (67.62%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:    1 MLGMAGSKRIMAPEVCNAIPYNEKVDVYSFSIVVWELCALQKPFAGMNAADHFREVVQGGQRPPLDPAWPAELRDLLEACWDEDPHARPSIAEARERLRAMILRG 315
            M GMAGSKR M+PEVC  +PYNEKVDVYSF+IV+WE+C L+KPFAGM+ ADH+REV+ GG RPPLDP WP  L+ LL+ACW EDP  RPSI+EAR+ L+ + L G
Sbjct:  234 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQHLLQACWHEDPDRRPSISEARDVLQQIFLAG 338
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BLAST of mRNA_H-fluviatilis_contig10104.278.1 vs. uniprot
Match: A0A6H5L2N4_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2N4_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.070e-42
Identity = 65/105 (61.90%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    1 MLGMAGSKRIMAPEVCNAIPYNEKVDVYSFSIVVWELCALQKPFAGMNAADHFREVVQGGQRPPLDPAWPAELRDLLEACWDEDPHARPSIAEARERLRAMILRG 315
            M GMAGSKR MAPEVC  + YNEKVDVYSF++V+W++CAL+KPFAGM+ ADH+ +VVQGG RPPLD  WP +L  LL+ACW   P ARP++ +AR+ LR +   G
Sbjct:  193 MSGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQARDTLRQIFAMG 297
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BLAST of mRNA_H-fluviatilis_contig10104.278.1 vs. uniprot
Match: A0A6H5K4Q0_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4Q0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 5.750e-34
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 MLGMAGSKRIMAPEVCNAIPYNEKVDVYSFSIVVWELCALQKPFAGMNAADHFREVVQGGQRPPLDPAWPAELRDLLEACWDEDPHARPSIAEARERLRAMI 306
            M G  GS+R MAPEV + +PYNEK D+YS+ IV+WELCALQKPFAGM++ +H R+V + G RPPLD  WP EL+ LL +CW  +   RP  A+A E L  +I
Sbjct:  263 MTGQTGSQRFMAPEVFDGMPYNEKADIYSYGIVLWELCALQKPFAGMSSHEHARKVFRHGVRPPLDKRWPDELKSLLRSCWHAEAEERPDAAQAVETLARII 364
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BLAST of mRNA_H-fluviatilis_contig10104.278.1 vs. uniprot
Match: A0A7S1ZVA0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVA0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 5.080e-31
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 MLGMAGSKRIMAPEVCNAIPYNEKVDVYSFSIVVWELCALQKPFAGMNAADHFREVVQGGQRPPLDPAWPAELRDLLEACWDEDPHARPSIAEARERLRAMI 306
            M G  GS R MAPEV  ++PYN+K DVYSF I++WEL A +KP+ GMN  + +  VV+G +RPP++  WP EL  L++ CW  D   RPS  E  ERL AM+
Sbjct:  104 MSGQTGSLRYMAPEVAKSLPYNQKADVYSFGIILWELNAYKKPYEGMNKDEFYMRVVEGKERPPINKKWPEELVQLMQECWSFDARLRPSFHEIVERLDAML 205
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BLAST of mRNA_H-fluviatilis_contig10104.278.1 vs. uniprot
Match: A0A7S3XMV1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMV1_HETAK)

HSP 1 Score: 112 bits (280), Expect = 4.360e-29
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:    1 MLGMAGSKRIMAPEVCNAIPYNEKVDVYSFSIVVWELCALQKPFAGMNAA-DHFREVVQGGQRPPLDPAWPAELRDLLEACWDEDPHARPSIAEARERLRAMI 306
            + G  GS R MAPEV   +PYN  VDVY ++++ WEL AL++PF  +    D F++VV+GG RPPLDPAWP + R+L  ACW  DP  RPS  E    ++ ++
Sbjct:   77 LTGETGSLRYMAPEVAQQLPYNGAVDVYGWALLTWELMALRRPFHELKGVKDFFKQVVRGGLRPPLDPAWPEDFRELAAACWSPDPGRRPSAQELAALMKMLV 179
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BLAST of mRNA_H-fluviatilis_contig10104.278.1 vs. uniprot
Match: A0A6V2JN82_9STRA (Hypothetical protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2JN82_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.850e-29
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 MLGMAGSKRIMAPEVCNAIPYNEKVDVYSFSIVVWELCALQKPFAGMNAADHFREVVQGGQRPPLDPAWPAELRDLLEACWDEDPHARPSIAEARERLRAMI 306
            M G  GS R MAPEV  ++PYN+K DVYSF I++WEL A +KP+ GMN  + +  VV+G +RPP++  WP EL  L++ CW  D   RPS  E  ERL AM+
Sbjct:  546 MSGQTGSLRYMAPEVAKSLPYNQKADVYSFGIILWELNAYKKPYEGMNKDEFYMRVVEGKERPPINKKWPEELVQLMQECWSFDARLRPSFHEIVERLDAML 647
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BLAST of mRNA_H-fluviatilis_contig10104.278.1 vs. uniprot
Match: A0A835Z8G5_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.290e-28
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 MLGMAGSKRIMAPEVCNAIPYNEKVDVYSFSIVVWELCALQKPFAGMNAADHFREVVQGGQRPPLDPAWPAELRDLLEACWDEDPHARPSIAEARERLRAMI 306
            M G  GS R MAPEV  + PYNEKVDV+S+S+V+WE+  L+KP+ GM     +  VV+G  RPPL+  WP E  DLL ACW ED  ARPS A+   RL+ M+
Sbjct:  476 MTGETGSTRYMAPEVAESRPYNEKVDVHSYSMVLWEMATLRKPYDGMARDQFYSAVVRGHVRPPLNKRWPKEFSDLLSACWSEDWRARPSFADICNRLQEML 577
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BLAST of mRNA_H-fluviatilis_contig10104.278.1 vs. uniprot
Match: B8CCK4_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCK4_THAPS)

HSP 1 Score: 108 bits (269), Expect = 1.630e-28
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:    1 MLGMAGSKRIMAPEVCNAIPYNEKVDVYSFSIVVWELCALQKPFAGMNAADHFREVVQGGQRPPLDPAWPAELRDLLEACWDEDPHARPSIAEARERL 294
            M G  GS R MAPEV +  PYN+K DVYSF I++WEL A +KP+ GMN  + +  VV+GG+RP L+  WP +L +L+++CWD +   RP+ ++  E L
Sbjct:    1 MSGETGSLRYMAPEVADCQPYNQKADVYSFGIILWELVAFKKPYDGMNRDEFYSRVVRGGERPLLNKKWPEDLSELMKSCWDAELVKRPNFSDIVEIL 98
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BLAST of mRNA_H-fluviatilis_contig10104.278.1 vs. uniprot
Match: A0A6H5LAW2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAW2_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.050e-28
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    1 MLGMAGSKRIMAPEVCNAIPYNEKVDVYSFSIVVWELCALQKPFAGMNAADHFREVVQGGQRPPLDPAWPAELRDLLEACWDEDPHARPSIAEARERLRAMILR 312
            M G  GS R M PEV   +PYNEK DVYSF +++WE+ +L++PF G+N  +  + V++GG+RPPL   W A LR+L+  CWDED   RP   E  + L  +  R
Sbjct:  252 MTGETGSTRYMCPEVAMQLPYNEKADVYSFGLILWEMLSLRRPFEGLNRKEFVQSVIKGGRRPPLQQEWSAALRELMRRCWDEDMDTRPEFEEVEDTLLQITHR 355
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BLAST of mRNA_H-fluviatilis_contig10104.278.1 vs. uniprot
Match: A0A835Z8J1_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.330e-28
Identity = 53/102 (51.96%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:    1 MLGMAGSKRIMAPEVCNAIPYNEKVDVYSFSIVVWELCALQKPFAGMNAADHFREVVQGGQRPPLDPAWPAELRDLLEACWDEDPHARPSIAEARERLRAMI 306
            M G  GS R MAPEV  + PYNEKVDV+S+ +V+WE+  L+KP+ GM     +  VV+G  RPPL+  WP E  DLL ACW ED  ARPS A+   RL+ M+
Sbjct:  414 MTGETGSTRYMAPEVAESRPYNEKVDVHSYGMVLWEMATLRKPYDGMARDQFYSAVVRGHVRPPLNKRWPKEFSDLLAACWAEDFKARPSFADVCNRLQEML 515
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10104.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMU8_9PHAE5.460e-4867.62Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5L2N4_9PHAE1.070e-4261.90Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5K4Q0_9PHAE5.750e-3455.88Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S1ZVA0_9STRA5.080e-3150.98Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3XMV1_HETAK4.360e-2947.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V2JN82_9STRA7.850e-2950.98Hypothetical protein n=6 Tax=Ditylum brightwellii ... [more]
A0A835Z8G5_9STRA1.290e-2852.94Serine/threonine-protein kinase CTR1 n=1 Tax=Tribo... [more]
B8CCK4_THAPS1.630e-2847.96Protein kinase domain-containing protein (Fragment... [more]
A0A6H5LAW2_9PHAE4.050e-2846.15Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835Z8J1_9STRA9.330e-2851.96Serine/threonine-protein kinase CTR1 n=1 Tax=Tribo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10104contigH-fluviatilis_contig10104:4660..4980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue4.3e-39
Seed eggNOG ortholog2880.D7FPX1
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929028.86624-CDS-H-fluviatilis_contig10104:4659..49801622929028.86624-CDS-H-fluviatilis_contig10104:4659..4980Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10104 4660..4980 -
1691135156.1002867-CDS-H-fluviatilis_contig10104:4659..49801691135156.1002867-CDS-H-fluviatilis_contig10104:4659..4980Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10104 4660..4980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10104.278.1prot_H-fluviatilis_contig10104.278.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10104 4660..4980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10104.278.1

>prot_H-fluviatilis_contig10104.278.1 ID=prot_H-fluviatilis_contig10104.278.1|Name=mRNA_H-fluviatilis_contig10104.278.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=107bp
MLGMAGSKRIMAPEVCNAIPYNEKVDVYSFSIVVWELCALQKPFAGMNAA
DHFREVVQGGQRPPLDPAWPAELRDLLEACWDEDPHARPSIAEARERLRA
MILRGC*
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mRNA from alignment at H-fluviatilis_contig10104:4660..4980-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10104.278.1 ID=mRNA_H-fluviatilis_contig10104.278.1|Name=mRNA_H-fluviatilis_contig10104.278.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=321bp|location=Sequence derived from alignment at H-fluviatilis_contig10104:4660..4980- (Heribaudiella fluviatilis SAG_13_90)
ATGTTGGGCATGGCGGGTAGCAAGCGAATCATGGCCCCGGAAGTGTGCAA
TGCCATACCCTATAACGAAAAGGTCGATGTGTACTCTTTCTCAATTGTGG
TTTGGGAGCTCTGTGCGTTGCAAAAACCTTTCGCCGGGATGAACGCAGCT
GATCACTTCCGAGAGGTAGTGCAGGGAGGACAACGACCACCGTTGGACCC
TGCTTGGCCTGCAGAATTGCGAGACCTCCTTGAGGCATGTTGGGACGAAG
ACCCGCACGCGCGTCCGTCGATCGCCGAAGCGCGGGAGCGGCTAAGGGCC
ATGATACTAAGGGGCTGTTGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10104:4660..4980-

>mRNA_H-fluviatilis_contig10104.278.1 ID=mRNA_H-fluviatilis_contig10104.278.1|Name=mRNA_H-fluviatilis_contig10104.278.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=642bp|location=Sequence derived from alignment at H-fluviatilis_contig10104:4660..4980- (Heribaudiella fluviatilis SAG_13_90)
ATGTTGGGCATGGCGGGTAGCAAGCGAATCATGGCCCCGGAAGTGTGCAA
TGCCATACCCTATAACGAAAAGGTCGATGTGTACTCTTTCTCAATTGTGG
TTTGGGAGCTCTGTGCGTTGCAAAAACCTTTCGCCGGGATGAACGCAGCT
GATCACTTCCGAGAGGTAGTGCAGGGAGGACAACGACCACCGTTGGACCC
TGCTTGGCCTGCAGAATTGCGAGACCTCCTTGAGGCATGTTGGGACGAAG
ACCCGCACGCGCGTCCGTCGATCGCCGAAGCGCGGGAGCGGCTAAGGGCC
ATGATACTAAGGGGCTGTTGAATGTTGGGCATGGCGGGTAGCAAGCGAAT
CATGGCCCCGGAAGTGTGCAATGCCATACCCTATAACGAAAAGGTCGATG
TGTACTCTTTCTCAATTGTGGTTTGGGAGCTCTGTGCGTTGCAAAAACCT
TTCGCCGGGATGAACGCAGCTGATCACTTCCGAGAGGTAGTGCAGGGAGG
ACAACGACCACCGTTGGACCCTGCTTGGCCTGCAGAATTGCGAGACCTCC
TTGAGGCATGTTGGGACGAAGACCCGCACGCGCGTCCGTCGATCGCCGAA
GCGCGGGAGCGGCTAAGGGCCATGATACTAAGGGGCTGTTGA
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