mRNA_H-fluviatilis_contig10100.272.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10100.272.1
Unique NamemRNA_H-fluviatilis_contig10100.272.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10100.272.1 vs. uniprot
Match: D7FR93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR93_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.000e-55
Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 1 
Query:    4 MMLAGMGLLNTMPMLATITVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFGDLYRFFATSHVYLGFE 291
            MMLAGMGLLNTMPMLAT+TVEKGLL +LGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHS F DLYRFFA SH YLGFE
Sbjct:    2 MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 97
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BLAST of mRNA_H-fluviatilis_contig10100.272.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.240e-49
Identity = 89/97 (91.75%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    4 MMLAGMGLLNTMPMLATITVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFGDLYRFFATSHVYLGFEV 294
            MMLAGMGLLNTMPMLAT+TVEKGLL +LGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHS F DLYRFFA SH YLGFE+
Sbjct: 1738 MMLAGMGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFEL 1834
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BLAST of mRNA_H-fluviatilis_contig10100.272.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.000e-45
Identity = 84/98 (85.71%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATITVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFGDLYRFFATSHVYLGFEV 294
            QM+LAGMG+LNT+PMLAT+ VEKGL A+L  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSF DLYRFFATSH YLGFE+
Sbjct: 1424 QMLLAGMGVLNTLPMLATLMVEKGLRAALITVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFDDLYRFFATSHFYLGFEL 1521
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BLAST of mRNA_H-fluviatilis_contig10100.272.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.010e-45
Identity = 84/98 (85.71%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATITVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFGDLYRFFATSHVYLGFEV 294
            QMMLAGMG+LNT+PMLAT+ VEKGL A+L  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHS+F DLYRFFATSH YLGFE+
Sbjct: 1823 QMMLAGMGVLNTLPMLATLMVEKGLRAALVVVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSTFDDLYRFFATSHFYLGFEL 1920
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BLAST of mRNA_H-fluviatilis_contig10100.272.1 vs. uniprot
Match: A0A8J2T241_9STRA (1,3-beta-glucan synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T241_9STRA)

HSP 1 Score: 144 bits (364), Expect = 4.880e-38
Identity = 71/98 (72.45%), Postives = 86/98 (87.76%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATITVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFGDLYRFFATSHVYLGFEV 294
            Q++LAG+GLLNT+P+LAT+ VE+GLLA+  +V QVF SGGP+YF+FHIQTRAHYF QTLLAGGA YRATGRGFVT H+SF + YRFFA SH+YLG E+
Sbjct: 1803 QVVLAGLGLLNTLPLLATLAVERGLLAATRDVAQVFASGGPLYFVFHIQTRAHYFMQTLLAGGATYRATGRGFVTTHNSFDEQYRFFAASHLYLGVEL 1900
[Close]
BLAST of mRNA_H-fluviatilis_contig10100.272.1 vs. uniprot
Match: F0YA81_AURAN (1,3-beta-glucan synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA81_AURAN)

HSP 1 Score: 140 bits (353), Expect = 1.490e-36
Identity = 68/98 (69.39%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATITVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFGDLYRFFATSHVYLGFEV 294
            Q++LAG+GLLNT+P+LAT+ VE+GL A+  +V QVF SGGP+YF+FHIQTRAHYF QT+LAGGA YRATGRGFVT HS+F + YRFFA SH++LG E+
Sbjct: 1899 QILLAGLGLLNTLPLLATLAVERGLWAAAKDVAQVFASGGPLYFIFHIQTRAHYFTQTILAGGATYRATGRGFVTRHSTFDEQYRFFAASHLHLGVEL 1996
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BLAST of mRNA_H-fluviatilis_contig10100.272.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.300e-35
Identity = 66/98 (67.35%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATITVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFGDLYRFFATSHVYLGFEV 294
            QM L GMG+L T+PM +T+ VEKG+ +++G VLQVF SGGP+YFMFHIQT+++YF QTLLAG A+YR TGRGFVT HSSF + +RFFA+SH YLGFE+
Sbjct: 1201 QMCLGGMGILQTVPMFSTLAVEKGVASAVGTVLQVFFSGGPLYFMFHIQTKSYYFIQTLLAGNAKYRPTGRGFVTRHSSFDENFRFFASSHFYLGFEL 1298
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BLAST of mRNA_H-fluviatilis_contig10100.272.1 vs. uniprot
Match: A0A7S2QVX6_9STRA (1,3-beta-glucan synthase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVX6_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.520e-35
Identity = 64/98 (65.31%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATITVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFGDLYRFFATSHVYLGFEV 294
            QM+L GMGL+NT+P+ AT+ VE+G  AS+ E+ QVF++GGP++FMFHIQT+AHYF QT+L GGA+YRATGRGFVT HS F + +RFFA+SH+YLG E+
Sbjct: 1647 QMLLGGMGLMNTIPLFATLGVERGWWASMMEIFQVFVTGGPLHFMFHIQTKAHYFAQTILVGGAKYRATGRGFVTQHSPFAENFRFFASSHLYLGVEL 1744
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BLAST of mRNA_H-fluviatilis_contig10100.272.1 vs. uniprot
Match: A0A7S3H8Z7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8Z7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.530e-34
Identity = 62/100 (62.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATITVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFGDLYRFFATSHVYLGFEVHL 300
            Q++L+GMG+L TMP+L T+TVEKG+LA++ E+  + LSGGP+YF+FHI+T+++YF QTL+AGGA+YR TGR FVT HSSF + +RFFA+SH+YLGFE+ +
Sbjct:  261 QLLLSGMGILQTMPLLITLTVEKGVLAAISEIGFMILSGGPLYFIFHIETKSYYFSQTLMAGGAKYRPTGRAFVTSHSSFDENFRFFASSHIYLGFEIFI 360
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BLAST of mRNA_H-fluviatilis_contig10100.272.1 vs. uniprot
Match: A0A7S0GHQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHQ8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.160e-32
Identity = 58/98 (59.18%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 QMMLAGMGLLNTMPMLATITVEKGLLASLGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFGDLYRFFATSHVYLGFEV 294
            QM+L G+GLL T+P++AT+ VE+G LA++ ++  VF++GGP++FMFHIQT+AHY  QT+L GGA+YR TGRGFVT H+   + +RFFA+SH+YLGFE+
Sbjct:  216 QMLLGGLGLLQTIPLIATLGVERGWLAAVQDIFSVFVTGGPLHFMFHIQTKAHYMAQTILVGGAKYRPTGRGFVTQHTPMDEQFRFFASSHLYLGFEL 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10100.272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR93_ECTSI1.000e-5592.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFR3_9PHAE1.240e-4991.751,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835Z4B5_9STRA1.000e-4585.711,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A835Z1S2_9STRA1.010e-4585.711,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A8J2T241_9STRA4.880e-3872.451,3-beta-glucan synthase n=1 Tax=Pelagomonas calce... [more]
F0YA81_AURAN1.490e-3669.391,3-beta-glucan synthase n=1 Tax=Aureococcus anoph... [more]
A0A7S2UV62_9STRA1.300e-3567.35Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2QVX6_9STRA4.520e-3565.311,3-beta-glucan synthase (Fragment) n=1 Tax=Tripar... [more]
A0A7S3H8Z7_9STRA1.530e-3462.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0GHQ8_9STRA1.160e-3259.18Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10100contigH-fluviatilis_contig10100:3620..4322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue3.9e-42
Seed eggNOG ortholog2880.D7FR93
KEGG koko:K11000
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycosyl transferase, family 48
Ec32 orthologEc-08_004910.1
Exons2
Model size306
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10100.272.1prot_H-fluviatilis_contig10100.272.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10100 3623..4322 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929028.5365465-UTR-H-fluviatilis_contig10100:3619..36221622929028.5365465-UTR-H-fluviatilis_contig10100:3619..3622Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10100 3620..3622 +
1691135155.9184265-UTR-H-fluviatilis_contig10100:3619..36221691135155.9184265-UTR-H-fluviatilis_contig10100:3619..3622Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10100 3620..3622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929028.5563228-CDS-H-fluviatilis_contig10100:3622..38191622929028.5563228-CDS-H-fluviatilis_contig10100:3622..3819Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10100 3623..3819 +
1691135155.9279933-CDS-H-fluviatilis_contig10100:3622..38191691135155.9279933-CDS-H-fluviatilis_contig10100:3622..3819Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10100 3623..3819 +
1622929028.5726633-CDS-H-fluviatilis_contig10100:4216..43221622929028.5726633-CDS-H-fluviatilis_contig10100:4216..4322Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10100 4217..4322 +
1691135155.9358976-CDS-H-fluviatilis_contig10100:4216..43221691135155.9358976-CDS-H-fluviatilis_contig10100:4216..4322Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10100 4217..4322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10100.272.1

>prot_H-fluviatilis_contig10100.272.1 ID=prot_H-fluviatilis_contig10100.272.1|Name=mRNA_H-fluviatilis_contig10100.272.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=101bp
MMLAGMGLLNTMPMLATITVEKGLLASLGEVLQVFLSGGPMYFMFHIQTR
AHYFYQTLLAGGAQYRATGRGFVTHHSSFGDLYRFFATSHVYLGFEVHLP
*
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mRNA from alignment at H-fluviatilis_contig10100:3620..4322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10100.272.1 ID=mRNA_H-fluviatilis_contig10100.272.1|Name=mRNA_H-fluviatilis_contig10100.272.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=703bp|location=Sequence derived from alignment at H-fluviatilis_contig10100:3620..4322+ (Heribaudiella fluviatilis SAG_13_90)
CAGATGATGCTCGCGGGCATGGGTCTCCTGAACACCATGCCCATGCTGGC
CACGATCACGGTTGAGAAGGGTCTGCTGGCATCTCTGGGCGAAGTGCTCC
AGGTGTTCCTGAGCGGTGGGCCGATGTACTTCATGTTCCACATTCAGACT
CGTGCCCACTACTTCTATCAGACTCTACTGGCAGGCGGGGCGCAGTATAG
GTGGGCATTTTGGGTTCCTAGCCGCTGCTTGCCTTTCTGGTTTTCATCTA
TAAGTGCGTTTTCGTTTGATTTTTGTTGTTCCCTGTTTAGAGCAGAGCAC
CAAGGTTACTCGCGGAATGTGTTTACTTCTGTCCTTGCTCTCGAATGCTC
CAAAAAGTGTGTGTGTGTGTTTGAGCATGTGTCAATGTCACAAAATACAT
GGGACATTTTTTTCATTGTTTTTTCCTTATCTGGACTTAAGACGGTCTGC
ACTTATCACTCCCCAAATCCCCGCCCAACATAGAGTAAACACCAAATCAA
CATGAGCGATTTTTCCTCAGTTGTATTGTGTTCTGTGGGCTTGTCTCCTT
TTGGACGATGACGCTTTTTTTTCTGGCGCAATGAATGTACTCGGCAGGGC
AACAGGACGGGGCTTCGTGACGCACCACTCTTCCTTCGGCGACCTCTACC
GTTTCTTCGCCACCTCGCACGTCTATCTGGGCTTCGAGGTGCATTTACCG
TAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10100:3620..4322+

>mRNA_H-fluviatilis_contig10100.272.1 ID=mRNA_H-fluviatilis_contig10100.272.1|Name=mRNA_H-fluviatilis_contig10100.272.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=606bp|location=Sequence derived from alignment at H-fluviatilis_contig10100:3620..4322+ (Heribaudiella fluviatilis SAG_13_90)
ATGATGCTCGCGGGCATGGGTCTCCTGAACACCATGCCCATGCTGGCCAC
GATCACGGTTGAGAAGGGTCTGCTGGCATCTCTGGGCGAAGTGCTCCAGG
TGTTCCTGAGCGGTGGGCCGATGTACTTCATGTTCCACATTCAGACTCGT
GCCCACTACTTCTATCAGACTCTACTGGCAGGCGGGGCGCAGTATAGATG
ATGCTCGCGGGCATGGGTCTCCTGAACACCATGCCCATGCTGGCCACGAT
CACGGTTGAGAAGGGTCTGCTGGCATCTCTGGGCGAAGTGCTCCAGGTGT
TCCTGAGCGGTGGGCCGATGTACTTCATGTTCCACATTCAGACTCGTGCC
CACTACTTCTATCAGACTCTACTGGCAGGCGGGGCGCAGTATAGGGCAAC
AGGACGGGGCTTCGTGACGCACCACTCTTCCTTCGGCGACCTCTACCGTT
TCTTCGCCACCTCGCACGTCTATCTGGGCTTCGAGGTGCATTTACCGTAG
GGCAACAGGACGGGGCTTCGTGACGCACCACTCTTCCTTCGGCGACCTCT
ACCGTTTCTTCGCCACCTCGCACGTCTATCTGGGCTTCGAGGTGCATTTA
CCGTAG
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