mRNA_H-fluviatilis_contig100975.264.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100975.264.1
Unique NamemRNA_H-fluviatilis_contig100975.264.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig100975.264.1 vs. uniprot
Match: A0A6H5L7J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.460e-21
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    4 FKEEVGRACQQAVSELMLEFNTGGNVRFEEGRPGDMWFSSCIDLVKSRV 150
            FKE VGRAC++AVSELMLEF+TGGNVRFEEGRPGD+WFSSC DLVKSRV
Sbjct:  487 FKEVVGRACKRAVSELMLEFDTGGNVRFEEGRPGDVWFSSCADLVKSRV 535
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BLAST of mRNA_H-fluviatilis_contig100975.264.1 vs. uniprot
Match: D7FPT4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT4_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.460e-21
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    4 FKEEVGRACQQAVSELMLEFNTGGNVRFEEGRPGDMWFSSCIDLVKSRV 150
            FKE VGRAC++AVSELMLEF+TGGNVRFEEGRPGD+WFSSC DLVKSRV
Sbjct:  441 FKEVVGRACKRAVSELMLEFDTGGNVRFEEGRPGDVWFSSCADLVKSRV 489
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BLAST of mRNA_H-fluviatilis_contig100975.264.1 vs. uniprot
Match: A0A7S3IGL4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IGL4_9SPIT)

HSP 1 Score: 64.7 bits (156), Expect = 3.990e-11
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 AFKEEVGRACQQAVSELMLEFNTGGNVRFEEGRPGDMWFSSCIDLVKSR 147
            + +++V    +Q +  LM E  TGGN+RFEEG+P D WFSSC+DLV+SR
Sbjct:  102 SLRKKVYDMSEQNIHRLMTELETGGNIRFEEGKPSDKWFSSCVDLVRSR 150
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BLAST of mRNA_H-fluviatilis_contig100975.264.1 vs. uniprot
Match: A0A7S3SID7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SID7_9SPIT)

HSP 1 Score: 62.4 bits (150), Expect = 1.320e-10
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   10 EEVGRACQQAVSELMLEFNTGGNVRFEEGRPGDMWFSSCIDLVKSRVV 153
            +EV    Q +++ L++E  TGGN+R E+G+P D+W+SSC+DLV SR V
Sbjct:   22 QEVCDLSQSSINRLLVELETGGNIRLEDGKPSDVWYSSCVDLVMSRFV 69
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BLAST of mRNA_H-fluviatilis_contig100975.264.1 vs. uniprot
Match: A0A7S1HYF6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HYF6_9EUGL)

HSP 1 Score: 62.8 bits (151), Expect = 3.500e-10
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   31 QQAVSELMLEFNTGGNVRFEEGRPGDMWFSSCIDLVKSR 147
            Q ++S +M+E  TGGN+R EEGRP D+WF SC+DL KSR
Sbjct:  366 QHSISRMMIELQTGGNIRLEEGRPTDVWFKSCVDLFKSR 404
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BLAST of mRNA_H-fluviatilis_contig100975.264.1 vs. uniprot
Match: A0A6G0WZM7_9STRA (Protein phosphatase 1 regulatory subunit 7 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZM7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.940e-10
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 AFKEEVGRACQQAVSELMLEFNTGGNVRFEEGRPGDMWFSSCIDLVKSR 147
            A    V    ++ +  LMLE +TGGN+R E+G+P D+W+ SC+DLVKSR
Sbjct:  378 ALVSRVALLSEKTIQRLMLELHTGGNIRLEDGKPSDVWYVSCVDLVKSR 426
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BLAST of mRNA_H-fluviatilis_contig100975.264.1 vs. uniprot
Match: A0A1R2D4U4_9CILI (Protein phosphatase 1 regulatory subunit 7 n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D4U4_9CILI)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-9
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 AFKEEVGRACQQAVSELMLEFNTGGNVRFEEGRPGDMWFSSCIDLVKSRVV 153
            A K ++  +C++ +S L+ E  TGGN+RFEEG+  D W++SC DLV SR +
Sbjct:  359 ALKSKIETSCKENISRLITELETGGNIRFEEGKNTDNWYTSCADLVLSRYI 409
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BLAST of mRNA_H-fluviatilis_contig100975.264.1 vs. uniprot
Match: A0A0M0JS56_9EUKA (Leucine-rich repeat-containing protein 9 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JS56_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-9
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 AFKEEVGRACQQAVSELMLEFNTGGNVRFEEGRPGDMWFSSCIDLVKSRVV 153
            A K  V    Q ++  LM+E  TGGN+R E+G+P D+W+ SC+DLV SR V
Sbjct:  380 ALKSLVCETSQTSICRLMVELETGGNIRLEDGKPADVWYMSCVDLVTSRFV 430
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BLAST of mRNA_H-fluviatilis_contig100975.264.1 vs. uniprot
Match: A0A485LDQ7_9STRA (Protein phosphatase 1 regulatory subunit 7 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDQ7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.670e-9
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 AFKEEVGRACQQAVSELMLEFNTGGNVRFEEGRPGDMWFSSCIDLVKSR 147
            A    +  A  + +  L+LE NTGGN+R E+G+P D+W+SSC+DL+ SR
Sbjct:  407 ALNARLALASDKTIRRLVLELNTGGNIRLEDGKPSDVWYSSCVDLLTSR 455
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BLAST of mRNA_H-fluviatilis_contig100975.264.1 vs. uniprot
Match: A0A8K1CNS6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNS6_PYTOL)

HSP 1 Score: 60.5 bits (145), Expect = 2.290e-9
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   22 RACQQAVSELMLEFNTGGNVRFEEGRPGDMWFSSCIDLVKSRV 150
            R    +VS L+LE  TGGN+R E+G+P D W+SSC+DLV+SR+
Sbjct:  401 RTGDTSVSRLLLELETGGNIRLEDGKPTDPWYSSCVDLVRSRL 443
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100975.264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7J2_9PHAE1.460e-2187.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPT4_ECTSI1.460e-2187.76Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A7S3IGL4_9SPIT3.990e-1153.06Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
A0A7S3SID7_9SPIT1.320e-1050.00Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S1HYF6_9EUGL3.500e-1061.54Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A6G0WZM7_9STRA8.940e-1048.98Protein phosphatase 1 regulatory subunit 7 n=1 Tax... [more]
A0A1R2D4U4_9CILI1.220e-947.06Protein phosphatase 1 regulatory subunit 7 n=1 Tax... [more]
A0A0M0JS56_9EUKA1.220e-949.02Leucine-rich repeat-containing protein 9 n=1 Tax=C... [more]
A0A485LDQ7_9STRA1.670e-946.94Protein phosphatase 1 regulatory subunit 7 n=1 Tax... [more]
A0A8K1CNS6_PYTOL2.290e-955.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100975contigH-fluviatilis_contig100975:45..197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog2880.D7FPT4
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.683263-CDS-H-fluviatilis_contig100975:44..1971622929027.683263-CDS-H-fluviatilis_contig100975:44..197Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100975 45..197 -
1691135155.3330169-CDS-H-fluviatilis_contig100975:44..1971691135155.3330169-CDS-H-fluviatilis_contig100975:44..197Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100975 45..197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100975.264.1prot_H-fluviatilis_contig100975.264.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100975 45..197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100975.264.1

>prot_H-fluviatilis_contig100975.264.1 ID=prot_H-fluviatilis_contig100975.264.1|Name=mRNA_H-fluviatilis_contig100975.264.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=51bp
AFKEEVGRACQQAVSELMLEFNTGGNVRFEEGRPGDMWFSSCIDLVKSRV
V
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mRNA from alignment at H-fluviatilis_contig100975:45..197-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100975.264.1 ID=mRNA_H-fluviatilis_contig100975.264.1|Name=mRNA_H-fluviatilis_contig100975.264.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=153bp|location=Sequence derived from alignment at H-fluviatilis_contig100975:45..197- (Heribaudiella fluviatilis SAG_13_90)
GCTTTTAAGGAGGAGGTAGGTCGTGCCTGCCAGCAGGCCGTTTCGGAGCT
CATGCTTGAATTTAACACTGGAGGGAATGTGCGTTTCGAGGAAGGGCGGC
CGGGAGACATGTGGTTTTCATCGTGTATCGACCTCGTCAAGTCTCGCGTG
GTG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100975:45..197-

>mRNA_H-fluviatilis_contig100975.264.1 ID=mRNA_H-fluviatilis_contig100975.264.1|Name=mRNA_H-fluviatilis_contig100975.264.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=306bp|location=Sequence derived from alignment at H-fluviatilis_contig100975:45..197- (Heribaudiella fluviatilis SAG_13_90)
GCTTTTAAGGAGGAGGTAGGTCGTGCCTGCCAGCAGGCCGTTTCGGAGCT
CATGCTTGAATTTAACACTGGAGGGAATGTGCGTTTCGAGGAAGGGCGGC
CGGGAGACATGTGGTTTTCATCGTGTATCGACCTCGTCAAGTCTCGCGTG
GTGGCTTTTAAGGAGGAGGTAGGTCGTGCCTGCCAGCAGGCCGTTTCGGA
GCTCATGCTTGAATTTAACACTGGAGGGAATGTGCGTTTCGAGGAAGGGC
GGCCGGGAGACATGTGGTTTTCATCGTGTATCGACCTCGTCAAGTCTCGC
GTGGTG
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