mRNA_H-fluviatilis_contig100927.258.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100927.258.1
Unique NamemRNA_H-fluviatilis_contig100927.258.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100927.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100927contigH-fluviatilis_contig100927:281..844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100927.258.1prot_H-fluviatilis_contig100927.258.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100927 321..632 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.17343-UTR-H-fluviatilis_contig100927:280..3201622929027.17343-UTR-H-fluviatilis_contig100927:280..320Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100927 281..320 +
1691135155.0764468-UTR-H-fluviatilis_contig100927:280..3201691135155.0764468-UTR-H-fluviatilis_contig100927:280..320Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100927 281..320 +
1622929027.2044404-UTR-H-fluviatilis_contig100927:632..8441622929027.2044404-UTR-H-fluviatilis_contig100927:632..844Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100927 633..844 +
1691135155.0924308-UTR-H-fluviatilis_contig100927:632..8441691135155.0924308-UTR-H-fluviatilis_contig100927:632..844Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100927 633..844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.1916018-CDS-H-fluviatilis_contig100927:320..6321622929027.1916018-CDS-H-fluviatilis_contig100927:320..632Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100927 321..632 +
1691135155.0845375-CDS-H-fluviatilis_contig100927:320..6321691135155.0845375-CDS-H-fluviatilis_contig100927:320..632Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100927 321..632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100927.258.1

>prot_H-fluviatilis_contig100927.258.1 ID=prot_H-fluviatilis_contig100927.258.1|Name=mRNA_H-fluviatilis_contig100927.258.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=104bp
MITATDHLVGTTDLGSHQAGRLTLLLGGEFNGQRLEKWDIDPTTQGITAP
QGEENVLEPEEEEHNPQIPPMPMGVQETGCLRVATYLSAVVRGRTPIIRA
LGN*
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mRNA from alignment at H-fluviatilis_contig100927:281..844+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100927.258.1 ID=mRNA_H-fluviatilis_contig100927.258.1|Name=mRNA_H-fluviatilis_contig100927.258.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=564bp|location=Sequence derived from alignment at H-fluviatilis_contig100927:281..844+ (Heribaudiella fluviatilis SAG_13_90)
TGCCAGGTGGTCGACGGACCGCCACTTGTATATTGAGAGCATGATAACTG
CTACCGACCACCTGGTTGGTACCACGGACCTGGGATCACACCAGGCAGGA
AGATTGACCCTACTCCTAGGCGGGGAATTCAATGGGCAAAGGCTGGAGAA
GTGGGATATTGATCCGACAACTCAGGGAATAACGGCCCCGCAAGGGGAAG
AAAACGTGTTGGAACCTGAGGAGGAGGAGCATAACCCACAGATACCGCCA
ATGCCGATGGGGGTGCAGGAAACAGGCTGCCTTCGGGTGGCCACATACTT
ATCTGCGGTGGTGCGGGGACGGACCCCGATCATCCGGGCGCTGGGGAATT
GACCCCTTGCCCAACTTCCGCTGAGAACCGAAGCCCGAGGGGTGGGGTGG
CTCGTGTACTGAACTGAGCTGGGGGCAACGACATAGGGGGTTTTAGTGGG
TGAGAGTCCCACACTACCTTGGTCACTTCATACCGCGTCGCCGAGGTGCC
TACCCCACATGATCCCTCTCCGAAAGAAAGGGGATCTGGCCGGCCCAAGG
GTAACTGGCACACG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100927:281..844+

>mRNA_H-fluviatilis_contig100927.258.1 ID=mRNA_H-fluviatilis_contig100927.258.1|Name=mRNA_H-fluviatilis_contig100927.258.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=624bp|location=Sequence derived from alignment at H-fluviatilis_contig100927:281..844+ (Heribaudiella fluviatilis SAG_13_90)
ATGATAACTGCTACCGACCACCTGGTTGGTACCACGGACCTGGGATCACA
CCAGGCAGGAAGATTGACCCTACTCCTAGGCGGGGAATTCAATGGGCAAA
GGCTGGAGAAGTGGGATATTGATCCGACAACTCAGGGAATAACGGCCCCG
CAAGGGGAAGAAAACGTGTTGGAACCTGAGGAGGAGGAGCATAACCCACA
GATACCGCCAATGCCGATGGGGGTGCAGGAAACAGGCTGCCTTCGGGTGG
CCACATACTTATCTGCGGTGGTGCGGGGACGGACCCCGATCATCCGGGCG
CTGGGGAATTGAATGATAACTGCTACCGACCACCTGGTTGGTACCACGGA
CCTGGGATCACACCAGGCAGGAAGATTGACCCTACTCCTAGGCGGGGAAT
TCAATGGGCAAAGGCTGGAGAAGTGGGATATTGATCCGACAACTCAGGGA
ATAACGGCCCCGCAAGGGGAAGAAAACGTGTTGGAACCTGAGGAGGAGGA
GCATAACCCACAGATACCGCCAATGCCGATGGGGGTGCAGGAAACAGGCT
GCCTTCGGGTGGCCACATACTTATCTGCGGTGGTGCGGGGACGGACCCCG
ATCATCCGGGCGCTGGGGAATTGA
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