mRNA_H-fluviatilis_contig10082.235.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10082.235.1
Unique NamemRNA_H-fluviatilis_contig10082.235.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10082.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10082contigH-fluviatilis_contig10082:3248..5098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionGlucose/ribitol dehydrogenase
Ec32 orthologEc-12_007650.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size768
Cds size114
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10082.235.1prot_H-fluviatilis_contig10082.235.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10082 3970..4755 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.7793272-UTR-H-fluviatilis_contig10082:3247..35251622929023.7793272-UTR-H-fluviatilis_contig10082:3247..3525Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10082 3248..3525 +
1691135153.7809558-UTR-H-fluviatilis_contig10082:3247..35251691135153.7809558-UTR-H-fluviatilis_contig10082:3247..3525Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10082 3248..3525 +
1622929023.8040283-UTR-H-fluviatilis_contig10082:3936..39691622929023.8040283-UTR-H-fluviatilis_contig10082:3936..3969Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10082 3937..3969 +
1691135153.7890124-UTR-H-fluviatilis_contig10082:3936..39691691135153.7890124-UTR-H-fluviatilis_contig10082:3936..3969Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10082 3937..3969 +
1622929023.871819-UTR-H-fluviatilis_contig10082:4755..50981622929023.871819-UTR-H-fluviatilis_contig10082:4755..5098Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10082 4756..5098 +
1691135153.8169534-UTR-H-fluviatilis_contig10082:4755..50981691135153.8169534-UTR-H-fluviatilis_contig10082:4755..5098Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10082 4756..5098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.8241386-CDS-H-fluviatilis_contig10082:3969..40081622929023.8241386-CDS-H-fluviatilis_contig10082:3969..4008Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10082 3970..4008 +
1691135153.8004754-CDS-H-fluviatilis_contig10082:3969..40081691135153.8004754-CDS-H-fluviatilis_contig10082:3969..4008Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10082 3970..4008 +
1622929023.857748-CDS-H-fluviatilis_contig10082:4680..47551622929023.857748-CDS-H-fluviatilis_contig10082:4680..4755Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10082 4681..4755 +
1691135153.8090768-CDS-H-fluviatilis_contig10082:4680..47551691135153.8090768-CDS-H-fluviatilis_contig10082:4680..4755Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10082 4681..4755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10082.235.1

>prot_H-fluviatilis_contig10082.235.1 ID=prot_H-fluviatilis_contig10082.235.1|Name=mRNA_H-fluviatilis_contig10082.235.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=38bp
MNFEKPDSYEPFLAYVRSKLGNSLDAKGFANASPHAE*
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mRNA from alignment at H-fluviatilis_contig10082:3248..5098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10082.235.1 ID=mRNA_H-fluviatilis_contig10082.235.1|Name=mRNA_H-fluviatilis_contig10082.235.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1851bp|location=Sequence derived from alignment at H-fluviatilis_contig10082:3248..5098+ (Heribaudiella fluviatilis SAG_13_90)
TGAAATTGCAACGAACTGTCACAAACGAAGTCGTGTCCAACGTGCATTTA
TGACGTCCCTCATGCACAGACCTCTCGCGAAGAAACCTGTCATTTAATGT
CTCCTGGAAAATACGCGACGACATTCGCGTGCGCACGGGGTGGCCCTGCT
AGAAGGGCTGGACGACGTTGATGTGAGTCTCGGGTTAGTGGACTTGGATT
CGCCGCAACCCGTCATCGACGTCGCACAGCGCTTCAGGGCGTTTGAAGAC
AAGATCGGCGCGCTCATCAACAATTCAGGTATAATCTCACACACGATAGA
GAGGCTAGAAAAAGCCCCGCACTGTGGTTGGTTGTATGCAGGTCGACATC
GAACGTACGTCATTTGATACAGTATTTGCCGGAATTTAGCCTCTCTTTTT
TGCAGGTGAGCGTTAAATGTGCGGTCTCGTCTCTTCGCATGCTCTGAATG
GTGATTGACGACCCTATATGTTCGTCTTGCTCGTTCAAGCAACCATCAGT
CAGCCTTTTGTCCTTCCTTGCAAACACGGTGTGTACCCTTGATAAACGCT
GGTGTCACGGTAATACCGCAAAGGCAAGAAACAGTCGACGGATACGAAAT
GCAAATGGGAGTCAATAACGTTGGCCACCATCTGCTGAGCAGGCTTGCAG
AGCGGTCGCCTCATATTCTTGTCTTCTGGCGTATGACAGGATCTTTGGGC
AGGTGATCGAGGTGGATTCAACATGAACTTCGAGAAGCCGGACTCATACG
AACCCTTTCTGGTGAATCATGTAACGAGAGAAAAAGCGGACGGCAAGGCG
TGCGGTAGGCAGGCGAGGGTGGCATATCATGACGGGAGTTGGTGCAGTTG
AGGGCACTAACGGCGCTGCGCACAGATACCTCGCGCGACATTGAACCATA
AATTATGACGTGCCACGTTGTAGACGGTTGGGCATAGTTTCTACAACGTT
CCTATTTCTTCAAACCTATTAGTAGCCTACCCTTAGGCCGAGTTGGAAAA
TGCTACCACCATAACATAGTTTGCGAAGAAACGCAACGCCAAAAAGGCGC
TACATGAAAAAGGTATGCACTCTGCCAGTTGAAGATTCATCTACCCGAGG
TATACGAGTCTTCCGTGCAGTACATTTTTTATGTCGATGCGATTTTGTGG
ATCGTTCCTCCGTAGACAGTTCCTTGGATGTAACGTTGTTTTGGCGTTAG
GGTGGGCGAGTAGTGTGTTCTGAAAAAACTGGGATGTTGCTACCACCCAC
AACTTGTGGCATTGCGATTTACAACCAATGGCCCGCAAGGTACCTTCCGG
TGAAGTCTTCATCCGCATGGCAAGAGATTGTTGCGCTATCTTAACCTCCT
CCTTGCCAGTCTGGTACATGCGCGTTCTGTGCTGCAGCTTTCGCTAATCC
CATCTCGTATCGTGGTGATGTATTTTGCTACAGGCTTACGTGCGGTCGAA
ACTGGGCAATAGCTTGGACGCCAAGGGGTTCGCGAACGCTTCGCCTCACG
CAGAATAATCACCTACGCCGTGCACCCCGGAGGACTAGAAACTGAGCTCG
GTAGAAACCTTGGCAAAGAGGCTTAGCTGCCATTATGGCGAGCAACACGA
TGACCAAGGCAAAAAACGCCCCAAAAAAAGCAAAGACCACTCGAAGCTGA
CTACGCTCAAGTTCGCTATCGATCATTCCCTTGGTAAAGCGGAGGTCTTG
GGCATGTGAGGCATTTATATCGTCAAGCAGTCGCTGCGGAAGTCTATTAG
CCATTGAGGTGCAATGGTTAACTGAGCAAAAATGTGACATTTTCCTTCCC
CTTTGTTCGCCCCCCCGGATCCCCCCCTCCCCCCCACCTCAACAATAAAA
C
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10082:3248..5098+

>mRNA_H-fluviatilis_contig10082.235.1 ID=mRNA_H-fluviatilis_contig10082.235.1|Name=mRNA_H-fluviatilis_contig10082.235.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=228bp|location=Sequence derived from alignment at H-fluviatilis_contig10082:3248..5098+ (Heribaudiella fluviatilis SAG_13_90)
ATGAACTTCGAGAAGCCGGACTCATACGAACCCTTTCTGATGAACTTCGA
GAAGCCGGACTCATACGAACCCTTTCTGGCTTACGTGCGGTCGAAACTGG
GCAATAGCTTGGACGCCAAGGGGTTCGCGAACGCTTCGCCTCACGCAGAA
TAAGCTTACGTGCGGTCGAAACTGGGCAATAGCTTGGACGCCAAGGGGTT
CGCGAACGCTTCGCCTCACGCAGAATAA
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