Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Ec32 ortholog description | Glucose/ribitol dehydrogenase |
| Ec32 ortholog | Ec-12_007650.1 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 3 |
| Model size | 768 |
| Cds size | 114 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929023.7793272-UTR-H-fluviatilis_contig10082:3247..3525 | 1622929023.7793272-UTR-H-fluviatilis_contig10082:3247..3525 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10082 3248..3525 + |
| 1691135153.7809558-UTR-H-fluviatilis_contig10082:3247..3525 | 1691135153.7809558-UTR-H-fluviatilis_contig10082:3247..3525 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10082 3248..3525 + |
| 1622929023.8040283-UTR-H-fluviatilis_contig10082:3936..3969 | 1622929023.8040283-UTR-H-fluviatilis_contig10082:3936..3969 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10082 3937..3969 + |
| 1691135153.7890124-UTR-H-fluviatilis_contig10082:3936..3969 | 1691135153.7890124-UTR-H-fluviatilis_contig10082:3936..3969 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10082 3937..3969 + |
| 1622929023.871819-UTR-H-fluviatilis_contig10082:4755..5098 | 1622929023.871819-UTR-H-fluviatilis_contig10082:4755..5098 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10082 4756..5098 + |
| 1691135153.8169534-UTR-H-fluviatilis_contig10082:4755..5098 | 1691135153.8169534-UTR-H-fluviatilis_contig10082:4755..5098 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig10082 4756..5098 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929023.8241386-CDS-H-fluviatilis_contig10082:3969..4008 | 1622929023.8241386-CDS-H-fluviatilis_contig10082:3969..4008 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10082 3970..4008 + |
| 1691135153.8004754-CDS-H-fluviatilis_contig10082:3969..4008 | 1691135153.8004754-CDS-H-fluviatilis_contig10082:3969..4008 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10082 3970..4008 + |
| 1622929023.857748-CDS-H-fluviatilis_contig10082:4680..4755 | 1622929023.857748-CDS-H-fluviatilis_contig10082:4680..4755 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10082 4681..4755 + |
| 1691135153.8090768-CDS-H-fluviatilis_contig10082:4680..4755 | 1691135153.8090768-CDS-H-fluviatilis_contig10082:4680..4755 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig10082 4681..4755 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10082.235.1 >prot_H-fluviatilis_contig10082.235.1 ID=prot_H-fluviatilis_contig10082.235.1|Name=mRNA_H-fluviatilis_contig10082.235.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=38bp
MNFEKPDSYEPFLAYVRSKLGNSLDAKGFANASPHAE* back to topmRNA from alignment at H-fluviatilis_contig10082:3248..5098+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig10082.235.1 ID=mRNA_H-fluviatilis_contig10082.235.1|Name=mRNA_H-fluviatilis_contig10082.235.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1851bp|location=Sequence derived from alignment at H-fluviatilis_contig10082:3248..5098+ (Heribaudiella fluviatilis SAG_13_90)
TGAAATTGCAACGAACTGTCACAAACGAAGTCGTGTCCAACGTGCATTTA
TGACGTCCCTCATGCACAGACCTCTCGCGAAGAAACCTGTCATTTAATGT
CTCCTGGAAAATACGCGACGACATTCGCGTGCGCACGGGGTGGCCCTGCT
AGAAGGGCTGGACGACGTTGATGTGAGTCTCGGGTTAGTGGACTTGGATT
CGCCGCAACCCGTCATCGACGTCGCACAGCGCTTCAGGGCGTTTGAAGAC
AAGATCGGCGCGCTCATCAACAATTCAGGTATAATCTCACACACGATAGA
GAGGCTAGAAAAAGCCCCGCACTGTGGTTGGTTGTATGCAGGTCGACATC
GAACGTACGTCATTTGATACAGTATTTGCCGGAATTTAGCCTCTCTTTTT
TGCAGGTGAGCGTTAAATGTGCGGTCTCGTCTCTTCGCATGCTCTGAATG
GTGATTGACGACCCTATATGTTCGTCTTGCTCGTTCAAGCAACCATCAGT
CAGCCTTTTGTCCTTCCTTGCAAACACGGTGTGTACCCTTGATAAACGCT
GGTGTCACGGTAATACCGCAAAGGCAAGAAACAGTCGACGGATACGAAAT
GCAAATGGGAGTCAATAACGTTGGCCACCATCTGCTGAGCAGGCTTGCAG
AGCGGTCGCCTCATATTCTTGTCTTCTGGCGTATGACAGGATCTTTGGGC
AGGTGATCGAGGTGGATTCAACATGAACTTCGAGAAGCCGGACTCATACG
AACCCTTTCTGGTGAATCATGTAACGAGAGAAAAAGCGGACGGCAAGGCG
TGCGGTAGGCAGGCGAGGGTGGCATATCATGACGGGAGTTGGTGCAGTTG
AGGGCACTAACGGCGCTGCGCACAGATACCTCGCGCGACATTGAACCATA
AATTATGACGTGCCACGTTGTAGACGGTTGGGCATAGTTTCTACAACGTT
CCTATTTCTTCAAACCTATTAGTAGCCTACCCTTAGGCCGAGTTGGAAAA
TGCTACCACCATAACATAGTTTGCGAAGAAACGCAACGCCAAAAAGGCGC
TACATGAAAAAGGTATGCACTCTGCCAGTTGAAGATTCATCTACCCGAGG
TATACGAGTCTTCCGTGCAGTACATTTTTTATGTCGATGCGATTTTGTGG
ATCGTTCCTCCGTAGACAGTTCCTTGGATGTAACGTTGTTTTGGCGTTAG
GGTGGGCGAGTAGTGTGTTCTGAAAAAACTGGGATGTTGCTACCACCCAC
AACTTGTGGCATTGCGATTTACAACCAATGGCCCGCAAGGTACCTTCCGG
TGAAGTCTTCATCCGCATGGCAAGAGATTGTTGCGCTATCTTAACCTCCT
CCTTGCCAGTCTGGTACATGCGCGTTCTGTGCTGCAGCTTTCGCTAATCC
CATCTCGTATCGTGGTGATGTATTTTGCTACAGGCTTACGTGCGGTCGAA
ACTGGGCAATAGCTTGGACGCCAAGGGGTTCGCGAACGCTTCGCCTCACG
CAGAATAATCACCTACGCCGTGCACCCCGGAGGACTAGAAACTGAGCTCG
GTAGAAACCTTGGCAAAGAGGCTTAGCTGCCATTATGGCGAGCAACACGA
TGACCAAGGCAAAAAACGCCCCAAAAAAAGCAAAGACCACTCGAAGCTGA
CTACGCTCAAGTTCGCTATCGATCATTCCCTTGGTAAAGCGGAGGTCTTG
GGCATGTGAGGCATTTATATCGTCAAGCAGTCGCTGCGGAAGTCTATTAG
CCATTGAGGTGCAATGGTTAACTGAGCAAAAATGTGACATTTTCCTTCCC
CTTTGTTCGCCCCCCCGGATCCCCCCCTCCCCCCCACCTCAACAATAAAA
C back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig10082:3248..5098+ >mRNA_H-fluviatilis_contig10082.235.1 ID=mRNA_H-fluviatilis_contig10082.235.1|Name=mRNA_H-fluviatilis_contig10082.235.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=228bp|location=Sequence derived from alignment at H-fluviatilis_contig10082:3248..5098+ (Heribaudiella fluviatilis SAG_13_90)
ATGAACTTCGAGAAGCCGGACTCATACGAACCCTTTCTGATGAACTTCGA
GAAGCCGGACTCATACGAACCCTTTCTGGCTTACGTGCGGTCGAAACTGG
GCAATAGCTTGGACGCCAAGGGGTTCGCGAACGCTTCGCCTCACGCAGAA
TAAGCTTACGTGCGGTCGAAACTGGGCAATAGCTTGGACGCCAAGGGGTT
CGCGAACGCTTCGCCTCACGCAGAATAA back to top
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