mRNA_H-fluviatilis_contig100794.230.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100794.230.1
Unique NamemRNA_H-fluviatilis_contig100794.230.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig100794.230.1 vs. uniprot
Match: A0A6H5KXM6_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM6_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 3.850e-43
Identity = 118/271 (43.54%), Postives = 146/271 (53.87%), Query Frame = 1 
Query:    1 VIFTHLFSAPLTELEMAKGGSGCQVPKAVPELSYQGERETLVRTLTESKKAIQFMSEAANTGSFARAVGCPNEPTTRDSSSYPRSSSEPGPAGLSESVRSCR------------------------DGECRMLHFTGHAQPGKLTFEDKYGQLQYIDEAHLLAMLRCKKKPVDDGSFGTETTSPQRGCTPARSAELSPRGSSDDRDDGAMGGGYALFEDTSNNIPALDIVEGSPEKEKEAAAADKASRSGLQLVFLSSCHSASLAQVFIEA 741
            VIFTHLFSAPL E +MA GGSG  + + V +LSY+ ER+TL RTL  + K ++F+SEAANT SFARAVGC   P+       P  +S PG  G S S  S                          + ECR++HFTGH  PG+LTFED  GQLQY+ EA LL+ML   +K    GS G    S +    PA +A             G +G     FE      P +D+ E S E E      + A R+GLQLVFLSSCHS S+A+ FIEA
Sbjct:   49 VIFTHLFSAPLVEQKMAPGGSGSVLVEKVDKLSYEEERDTLHRTLDNADKRVRFLSEAANTRSFARAVGCRVPPS-------PPRASRPGSVGSSLSAGSMXXXXXXXXXXXXXXXXXGDASAAEGERECRIVHFTGHGVPGELTFEDDSGQLQYVGEAELLSMLLRGRKESGGGS-GXXXGSRKHLGMPAHAAAAPAAAPVPGCYAGELG-----FEGGIGYAPFVDVSE-SVEPEARLGGGEGAPRTGLQLVFLSSCHSQSVAKCFIEA 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100794.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXM6_9PHAE3.850e-4343.54SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100794contigH-fluviatilis_contig100794:39..815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size741
Cds size741
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.5817027-CDS-H-fluviatilis_contig100794:38..1191622929022.5817027-CDS-H-fluviatilis_contig100794:38..119Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100794 39..119 -
1691135153.4120347-CDS-H-fluviatilis_contig100794:38..1191691135153.4120347-CDS-H-fluviatilis_contig100794:38..119Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100794 39..119 -
1622929022.6030798-CDS-H-fluviatilis_contig100794:155..8151622929022.6030798-CDS-H-fluviatilis_contig100794:155..815Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100794 156..815 -
1691135153.419655-CDS-H-fluviatilis_contig100794:155..8151691135153.419655-CDS-H-fluviatilis_contig100794:155..815Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100794 156..815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100794.230.1prot_H-fluviatilis_contig100794.230.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100794 39..815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100794.230.1

>prot_H-fluviatilis_contig100794.230.1 ID=prot_H-fluviatilis_contig100794.230.1|Name=mRNA_H-fluviatilis_contig100794.230.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=247bp
VIFTHLFSAPLTELEMAKGGSGCQVPKAVPELSYQGERETLVRTLTESKK
AIQFMSEAANTGSFARAVGCPNEPTTRDSSSYPRSSSEPGPAGLSESVRS
CRDGECRMLHFTGHAQPGKLTFEDKYGQLQYIDEAHLLAMLRCKKKPVDD
GSFGTETTSPQRGCTPARSAELSPRGSSDDRDDGAMGGGYALFEDTSNNI
PALDIVEGSPEKEKEAAAADKASRSGLQLVFLSSCHSASLAQVFIEA
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mRNA from alignment at H-fluviatilis_contig100794:39..815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100794.230.1 ID=mRNA_H-fluviatilis_contig100794.230.1|Name=mRNA_H-fluviatilis_contig100794.230.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=777bp|location=Sequence derived from alignment at H-fluviatilis_contig100794:39..815- (Heribaudiella fluviatilis SAG_13_90)
GTGATTTTCACGCACTTGTTCTCCGCCCCGCTCACGGAGCTCGAAATGGC
CAAAGGCGGCAGCGGTTGCCAAGTGCCAAAGGCCGTGCCCGAGCTCAGCT
ATCAGGGAGAGCGGGAGACCCTGGTCCGAACGCTCACTGAGTCGAAAAAG
GCGATTCAGTTCATGTCGGAGGCTGCCAATACGGGCTCGTTCGCTCGCGC
TGTAGGATGCCCAAACGAACCCACCACTCGCGACTCGAGCTCTTATCCTC
GTTCGAGCAGCGAACCTGGCCCGGCGGGCTTGTCAGAGAGCGTGCGGTCG
TGTCGCGATGGGGAGTGCCGTATGCTGCACTTCACGGGACACGCCCAGCC
GGGCAAGCTAACGTTTGAGGACAAGTACGGGCAGTTGCAATACATCGACG
AAGCCCACTTGCTGGCCATGTTGCGGTGCAAGAAGAAACCCGTGGACGAC
GGCTCTTTTGGAACGGAGACAACGTCTCCTCAAAGAGGCTGCACGCCCGC
GCGGTCCGCTGAGCTGTCTCCGAGAGGCTCATCCGACGACAGAGACGATG
GCGCTATGGGAGGCGGGTACGCGCTCTTTGAAGACACTTCTAACAACATA
CCAGCGCTTGACATTGTGGAAGGGTCACCAGAAAAAGAGAAGGAGGCGGC
GGCGGCGGATGTGGTGAACTCCCTGGCAAAGAACGACGAAGCAAAGAAAG
CGTCTCGCTCCGGTCTGCAGCTGGTGTTCCTCAGCTCGTGTCACTCGGCG
AGCCTTGCCCAGGTTTTTATTGAGGCG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100794:39..815-

>mRNA_H-fluviatilis_contig100794.230.1 ID=mRNA_H-fluviatilis_contig100794.230.1|Name=mRNA_H-fluviatilis_contig100794.230.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1482bp|location=Sequence derived from alignment at H-fluviatilis_contig100794:39..815- (Heribaudiella fluviatilis SAG_13_90)
GTGATTTTCACGCACTTGTTCTCCGCCCCGCTCACGGAGCTCGAAATGGC
CAAAGGCGGCAGCGGTTGCCAAGTGCCAAAGGCCGTGCCCGAGCTCAGCT
ATCAGGGAGAGCGGGAGACCCTGGTCCGAACGCTCACTGAGTCGAAAAAG
GCGATTCAGTTCATGTCGGAGGCTGCCAATACGGGCTCGTTCGCTCGCGC
TGTAGGATGCCCAAACGAACCCACCACTCGCGACTCGAGCTCTTATCCTC
GTTCGAGCAGCGAACCTGGCCCGGCGGGCTTGTCAGAGAGCGTGCGGTCG
TGTCGCGATGGGGAGTGCCGTATGCTGCACTTCACGGGACACGCCCAGCC
GGGCAAGCTAACGTTTGAGGACAAGTACGGGCAGTTGCAATACATCGACG
AAGCCCACTTGCTGGCCATGTTGCGGTGCAAGAAGAAACCCGTGGACGAC
GGCTCTTTTGGAACGGAGACAACGTCTCCTCAAAGAGGCTGCACGCCCGC
GCGGTCCGCTGAGCTGTCTCCGAGAGGCTCATCCGACGACAGAGACGATG
GCGCTATGGGAGGCGGGTACGCGCTCTTTGAAGACACTTCTAACAACATA
CCAGCGCTTGACATTGTGGAAGGGTCACCAGAAAAAGAGAAGGAGGCGGC
GGCGGCGGATGTGATTTTCACGCACTTGTTCTCCGCCCCGCTCACGGAGC
TCGAAATGGCCAAAGGCGGCAGCGGTTGCCAAGTGCCAAAGGCCGTGCCC
GAGCTCAGCTATCAGGGAGAGCGGGAGACCCTGGTCCGAACGCTCACTGA
GTCGAAAAAGGCGATTCAGTTCATGTCGGAGGCTGCCAATACGGGCTCGT
TCGCTCGCGCTGTAGGATGCCCAAACGAACCCACCACTCGCGACTCGAGC
TCTTATCCTCGTTCGAGCAGCGAACCTGGCCCGGCGGGCTTGTCAGAGAG
CGTGCGGTCGTGTCGCGATGGGGAGTGCCGTATGCTGCACTTCACGGGAC
ACGCCCAGCCGGGCAAGCTAACGTTTGAGGACAAGTACGGGCAGTTGCAA
TACATCGACGAAGCCCACTTGCTGGCCATGTTGCGGTGCAAGAAGAAACC
CGTGGACGACGGCTCTTTTGGAACGGAGACAACGTCTCCTCAAAGAGGCT
GCACGCCCGCGCGGTCCGCTGAGCTGTCTCCGAGAGGCTCATCCGACGAC
AGAGACGATGGCGCTATGGGAGGCGGGTACGCGCTCTTTGAAGACACTTC
TAACAACATACCAGCGCTTGACATTGTGGAAGGGTCACCAGAAAAAGAGA
AGGAGGCGGCGGCGGCGGATAAAGCGTCTCGCTCCGGTCTGCAGCTGGTG
TTCCTCAGCTCGTGTCACTCGGCGAGCCTTGCCCAGGTTTTTATTGAGGC
GAAAGCGTCTCGCTCCGGTCTGCAGCTGGTGTTCCTCAGCTCGTGTCACT
CGGCGAGCCTTGCCCAGGTTTTTATTGAGGCG
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